Methylation of L1HS elements found in HeLaS3 (both full-length and 3'-truncated)

chr1:34566055-34572105:-:L1HS:REF

chr1 34571900:34572085
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151634571900345719243457193434571941345719453457195034571968345720033457203434572043345720463457205234572069345720851.01.52.02.53.03.54.0read count

chr1:65390008-65390010:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123452238556164731041391571621661681731832075101520read count

chr1:67078891-67084915:-:L1HS:REF

chr1 67084713:67084897
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425266708471367084737670847476708475267084754670847586708476367084781670848166708484667084855670848586708486467084881670848971234567read count

chr1:68736693-68740136:-:L1HS:REF

chr1 68739931:68740116
methylatedunmethylatedunknownpositionproportionpatterns12345678687399316873995568739965687399706873997268739981687400346874006568740074687400776874010068740116246810read count

chr1:77000000-77005515:-:L1HS:REF

chr1 77005311:77005480
methylatedunmethylatedunknownpositionproportionpatterns12345677700531177005335770053457700535077005352770053567700536177005414770054457700545477005457770054637700548024681012read count

chr1:78485728-78485730:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324223855616473104139157162166168173183207246810read count

chr1:85748519-85754548:+:L1HS:REF

chr1 85748540:85748725
methylatedunmethylatedunknownpositionproportionpatterns1234567898574854085748556857485738574858285748591857486228574865785748675857486848574868685748691857487018574872524681012read count

chr1:85927067-85933100:+:L1HS:REF

chr1 85927084:85927273
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829308592708485927088859271048592712185927127859271308592713985927170859272058592722385927228859272328592723485927239859272731.01.52.02.53.03.54.0read count

chr1:86679080-86685111:-:L1HS:REF

chr1 86684907:86685092
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930318668490786684931866849418668494686684948866849528668495786684975866850108668504186685050866850538668505986685076866850921234567read count

chr1:102103367-102103369:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829302238556164731041391571621661681731832071.01.21.41.61.82.0read count

chr1:104770247-104776278:-:L1HS:REF

chr1 104776073:104776276
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425104776073104776097104776107104776112104776114104776123104776125104776176104776207104776216104776219104776225104776242104776258104776276123456read count

chr1:104843833-104849864:-:L1HS:REF

chr1 104849660:104849845
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161048496601048496841048496941048496991048497011048497051048497101048497121048497281048497631048497941048498061048498121048498291048498452468101214read count

chr1:105315153-105315155:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151622385561647310413915716216616817318320724681012read count

chr1:113497220-113500000:+:L1HS:REF

chr1 113497236:113497405
methylatedunmethylatedunknownpositionproportionpatterns12311349723611349725311349725911349726211349727111349730211349733711349735511349736011349736411349736611349737111349738111349740510203040read count

chr1:118852351-118858380:+:L1HS:REF

chr1 118852371:118852556
methylatedunmethylatedunknownpositionproportionpatterns123456789101111885237111885238711885240411885241011885241311885242211885245311885248811885250611885251111885251511885251711885252211885253211885255651015read count

chr1:121532230-121538261:-:L1HS:REF

chr1 121538056:121538241
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121312153805612153808012153809012153809712153810112153810612153812412153815912153819012153819912153820212153820812153822512153824151015read count

chr1:146717192-146723218:-:L1HS:REF

chr1 146723013:146723198
methylatedunmethylatedunknownpositionproportionpatterns123456789146723013146723037146723047146723052146723054146723058146723063146723065146723081146723116146723147146723156146723159146723165146723182146723198246810read count

chr1:166243053-166249084:-:L1HS:REF

chr1 166248880:166249065
methylatedunmethylatedunknownpositionproportionpatterns1234567816624888016624890416624891416624891916624892116624892516624893016624894816624898316624901416624902316624902616624903216624904916624906524681012read count

chr1:174590323-174596379:-:L1HS:REF

chr1 174596176:174596359
methylatedunmethylatedunknownpositionproportionpatterns123456174596176174596200174596210174596215174596217174596221174596242174596277174596308174596317174596326174596343174596359204060read count

chr1:179606225-179606227:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101122385561647310413915716216616817318320724681012read count

chr1:180866811-180872843:-:L1HS:REF

chr1 180872638:180872823
methylatedunmethylatedunknownpositionproportionpatterns12345180872638180872662180872672180872677180872679180872683180872688180872706180872741180872772180872781180872784180872790180872807180872823102030405060read count

chr1:184845616-184851641:+:L1HS:REF

chr1 184845631:184845816
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212218484563118484564718484566418484567018484567318484568218484571318484574818484576618484577118484577518484577718484578218484579218484581624681012read count

chr1:187343764-187349794:-:L1HS:REF

chr1 187349590:187349775
methylatedunmethylatedunknownpositionproportionpatterns123456789101118734959018734961418734962418734962918734963118734964018734965818734969318734972418734973318734973618734974218734977551015202530read count

chr1:187597671-187603699:+:L1HS:REF

chr1 187597689:187597874
methylatedunmethylatedunknownpositionproportionpatterns123418759768918759770518759772218759772818759773118759774018759777118759780618759782218759782418759782918759783518759784018759785018759787451015read count

chr1:193717837-193723892:-:L1HS:REF

chr1 193723689:193723874
methylatedunmethylatedunknownpositionproportionpatterns12345193723689193723713193723724193723728193723730193723734193723739193723757193723823193723832193723835193723841193723858193723874204060read count

chr1:196219370-196225402:-:L1HS:REF

chr1 196225197:196225382
methylatedunmethylatedunknownpositionproportionpatterns12345671962251971962252211962252311962252361962252381962252421962252471962253001962253311962253401962253431962253491962253661962253825101520read count

chr1:197707714-197713746:+:L1HS:REF

chr1 197707735:197707920
methylatedunmethylatedunknownpositionproportionpatterns12345619770773519770775119770776819770777419770777719770778619770781719770785219770787019770787519770787919770788119770788619770789619770792020406080100read count

chr1:197802331-197803141:+:L1HS:REF

chr1 197802351:197802529
methylatedunmethylatedunknownpositionproportionpatterns12345678197802351197802364197802390197802433197802468197802486197802491197802495197802497197802529204060read count

chr1:209913771-209919823:-:L1HS:REF

chr1 209919652:209919803
methylatedunmethylatedunknownpositionproportionpatterns123452099196522099196572099196592099196632099196682099196862099197212099197612099197642099197702099197872099198035101520read count

chr1:216485645-216487614:+:L1HS:REF

chr1 216485699:216485821
methylatedunmethylatedunknownpositionproportionpatterns1221648569921648570221648571121648574221648579521648580021648580421648580621648581121648582110203040read count

chr1:218009227-218015252:-:L1HS:REF

chr1 218015049:218015234
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282180150492180150602180150732180150832180150882180150902180150992180151172180151522180151832180151922180151952180152012180152182180152341.01.21.41.61.82.0read count

chr1:220245155-220246008:+:L1HS:REF

chr1 220245175:220245360
methylatedunmethylatedunknownpositionproportionpatterns1234522024517522024519122024522622024525722024529222024530822024531022024531922024532122024532622024533622024536020406080100120read count

chr1:237019467-237025494:-:L1HS:REF

chr1 237025316:237025477
methylatedunmethylatedunknownpositionproportionpatterns123452370253162370253262370253312370253332370253372370253422370253602370253952370254262370254352370254382370254442370254612370254771.01.52.02.53.03.54.0read count

chr1:237075264-237081293:+:L1HS:REF

chr1 237075264:237075444
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516172370752642370752832370752992370753162370753222370753252370753342370753662370754002370754182370754232370754272370754292370754342370754442468read count

chr1:239623498-239629523:-:L1HS:REF

chr1 239629323:239629508
methylatedunmethylatedunknownpositionproportionpatterns123456239629323239629347239629357239629362239629364239629368239629373239629375239629391239629426239629457239629466239629469239629475239629492239629508510152025read count

chr2:11000000-11002136:-:L1HS:REF

chr2 11001931:11002116
methylatedunmethylatedunknownpositionproportionpatterns12345611001931110019551100196511001970110019721100197611001981110019991100203411002065110020741100208311002100110021162468101214read count

chr2:16593725-16599758:-:L1HS:REF

chr2 16599553:16599738
methylatedunmethylatedunknownpositionproportionpatterns123456789165995531659957716599587165995921659959416599598165996031659962116599656165996871659969616599705165997221659973812345read count

chr2:35654287-35654289:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314152238556164731041391571621661681731832071.01.21.41.61.82.0read count

chr2:36112506-36118537:-:L1HS:REF

chr2 36118332:36118517
methylatedunmethylatedunknownpositionproportionpatterns12345636118332361183563611836636118371361183733611837736118382361184003611843536118466361184753611847836118484361185013611851712345read count

chr2:68941762-68941764:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567822385561647310413915716216616817318320724681012read count

chr2:71411474-71417501:-:L1HS:REF

chr2 71417298:71417483
methylatedunmethylatedunknownpositionproportionpatterns123471417298714173227141733271417337714173397141734371417348714173507141736671417401714174327141744171417444714174507141746771417483204060read count

chr2:81870918-81870920:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567892238556164731041391571621661681731832072468read count

chr2:86655238-86661268:-:L1HS:REF

chr2 86661064:86661233
methylatedunmethylatedunknownpositionproportionpatterns12345866610648666108886661098866611058666111486661132866611988666120786661210866612168666123351015202530read count

chr2:102566355-102572385:-:L1HS:REF

chr2 102572181:102572365
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181025721811025722041025722141025722191025722211025722251025722301025722481025722831025723231025723321025723491025723652468read count

chr2:112503812-112509845:-:L1HS:REF

chr2 112509636:112509826
methylatedunmethylatedunknownpositionproportionpatterns1234567112509636112509660112509670112509675112509677112509681112509686112509704112509739112509744112509775112509784112509787112509793112509810112509826102030read count

chr2:126178048-126184064:-:L1HS:REF

chr2 126183883:126184044
methylatedunmethylatedunknownpositionproportionpatterns123456789101261838831261838931261839001261839041261839091261839271261839621261839931261840021261840051261840111261840441.01.52.02.53.0read count

chr2:129415687-129417400:-:L1HS:REF

chr2 129417197:129417381
methylatedunmethylatedunknownpositionproportionpatterns12345612941719712941722112941723512941723712941724112941724612941726412941729912941733012941733912941734212941734812941736512941738151015read count

chr2:143253223-143253225:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435363738392238556164731041391571621661681731832071.01.52.02.53.03.54.0read count

chr2:143860956-143866987:+:L1HS:REF

chr2 143860977:143861162
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526143860977143860993143861010143861016143861019143861028143861059143861094143861112143861117143861121143861123143861138143861162123456read count

chr2:148188745-148194773:+:L1HS:REF

chr2 148188764:148188949
methylatedunmethylatedunknownpositionproportionpatterns123456781481887641481887801481887971481888031481888061481888151481888461481888811481888991481889041481889081481889101481889151481889251481889491020304050read count

chr2:153007766-153013796:-:L1HS:REF

chr2 153013593:153013778
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425261530135931530136171530136271530136321530136341530136381530136431530136611530136651530136961530137361530137391530137451530137621530137782468read count

chr2:157566353-157572377:+:L1HS:REF

chr2 157566368:157566529
methylatedunmethylatedunknownpositionproportionpatterns12345678915756636815756638415756640115756640715756641015756641915756645015756646615756648515756650815756651215756651415756651915756652912345read count

chr2:169248623-169254656:+:L1HS:REF

chr2 169248643:169248827
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161692486431692486591692486761692486821692486851692486941692487241692487591692487771692487821692487861692487881692487931692488031692488271234567read count

chr2:172315270-172321297:+:L1HS:REF

chr2 172315287:172315472
methylatedunmethylatedunknownpositionproportionpatterns12345678910111723152871723153031723153201723153261723153291723153381723153691723154041723154221723154271723154311723154331723154381723154481723154721.01.21.41.61.82.0read count

chr2:175481951-175487994:-:L1HS:REF

chr2 175487792:175487976
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425261754877921754878161754878261754878311754878331754878371754878421754878601754878951754879251754879341754879371754879431754879601754879761.01.21.41.61.82.0read count

chr2:177973073-177979090:+:L1HS:REF

chr2 177973094:177973279
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435361779730941779731101779731271779731331779731361779731451779731761779732111779732291779732341779732381779732401779732451779732551779732791.01.52.02.53.03.54.0read count

chr2:180833661-180839689:-:L1HS:REF

chr2 180839485:180839670
methylatedunmethylatedunknownpositionproportionpatterns12345618083948518083950918083952418083952618083953018083953518083953718083955318083958818083961918083962818083963118083963718083965418083967010203040read count

chr2:193170704-193171720:+:L1HS:REF

chr2 193170741:193170910
methylatedunmethylatedunknownpositionproportionpatterns123419317074119317075819317076419317076719317077619317080719317085819317086019317086519317086919317087119317087619317088619317091020406080read count

chr2:193212420-193218448:-:L1HS:REF

chr2 193218243:193218412
methylatedunmethylatedunknownpositionproportionpatterns12345678910193218243193218267193218277193218282193218284193218288193218293193218295193218311193218346193218377193218386193218389193218395193218412510152025read count

chr2:196905587-196911636:+:L1HS:REF

chr2 196905608:196905793
methylatedunmethylatedunknownpositionproportionpatterns12341969056081969056241969056411969056471969056501969056591969057251969057411969057431969057481969057521969057541969057591969057691969057931020304050read count

chr2:230337069-230342513:-:L1HS:REF

chr2 230342314:230342499
methylatedunmethylatedunknownpositionproportionpatterns123423034231423034233823034234923034235323034235523034235923034236423034238223034245723034246023034246623034248323034249920406080100read count

chr2:232149196-232155229:-:L1HS:REF

chr2 232155024:232155193
methylatedunmethylatedunknownpositionproportionpatterns123232155024232155048232155058232155063232155065232155069232155092232155127232155158232155167232155170232155176232155193102030read count

chr3:3963076-3969110:+:L1HS:REF

chr3 3963095:3963280
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920396309539631113963128396313439631373963177396321239632303963235396323939632413963246396325639632801234567read count

chr3:4916534-4922591:+:L1HS:REF

chr3 4916534:4916740
methylatedunmethylatedunknownpositionproportionpatterns12345678491653449165554916571491658849165944916597491660649166374916658491667249166884916695491669949167014916705491671649167405101520read count

chr3:11488672-11492490:-:L1HS:REF

chr3 11492291:11492437
methylatedunmethylatedunknownpositionproportionpatterns1234114922911149230811492318114923231149232911492353114924191149243710203040read count

chr3:17858274-17861391:-:L1HS:REF

chr3 17861189:17861374
methylatedunmethylatedunknownpositionproportionpatterns1234567891017861189178612231786122817861230178612341786123917861241178612571786129217861323178613321786133517861341178613581786137451015read count

chr3:18516080-18520244:+:L1HS:REF

chr3 18516101:18516286
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131851610118516143185161831851621818516234185162471851625218516279185162865101520read count

chr3:20707402-20707404:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345672238556164731041391571621661681731832071.01.52.02.53.0read count

chr3:26036528-26042769:-:L1HS:REF

chr3 26042570:26042749
methylatedunmethylatedunknownpositionproportionpatterns123456789101112260425702604257926042604260426672604269826042707260427102604274951015202530read count

chr3:26398017-26404045:-:L1HS:REF

chr3 26403844:26404028
methylatedunmethylatedunknownpositionproportionpatterns1234567826403844264038832640388526403889264038942640391226403947264039862640398926403995264040282468101214read count

chr3:29108111-29112113:-:L1HS:REF

chr3 29111933:29112094
methylatedunmethylatedunknownpositionproportionpatterns1234567891011291119332911194329111948291119542911195929111977291120432911205229112055291120612911207829112094510152025read count

chr3:35454617-35458296:+:L1HS:REF

chr3 35454630:35454816
methylatedunmethylatedunknownpositionproportionpatterns12345678910354546303545466335454669354547133545476635454775354547823545480935454816510152025read count

chr3:46315213-46315215:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891022385561647310413915716216616817318320751015read count

chr3:46783105-46789138:-:L1HS:REF

chr3 46788933:46789118
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435364678893346788957467889674678897246788974467889784678898346789001467890364678906746789076467890794678908546789102467891181.01.52.02.53.0read count

chr3:54394322-54400323:-:L1HS:REF

chr3 54400121:54400306
methylatedunmethylatedunknownpositionproportionpatterns123456789544001215440014554400155544001605440016254400166544001715440018954400224544002555440026754400273544002905440030651015read count

chr3:77763677-77769678:-:L1HS:REF

chr3 77769474:77769658
methylatedunmethylatedunknownpositionproportionpatterns1234567777694747776949777769507777695127776951477769518777695417776957677769607777696197776962577769642777696581.01.52.02.53.0read count

chr3:82337499-82339442:+:L1HS:REF

chr3 82337499:82337705
methylatedunmethylatedunknownpositionproportionpatterns1234567891011128233749982337536823375598233756282337602823376378233765382337655823376608233766482337666823376718233768182337705246810read count

chr3:89460825-89466856:-:L1HS:REF

chr3 89466652:89466836
methylatedunmethylatedunknownpositionproportionpatterns123456789894666528946667689466686894666918946669389466697894667028946672089466755894667858946679489466797894668038946682089466836123456read count

chr3:90169567-90175598:-:L1HS:REF

chr3 90175417:90175578
methylatedunmethylatedunknownpositionproportionpatterns12345678910111290175417901754329017543490175438901754439017546190175496901755369017553990175545901755629017557851015read count

chr3:103556537-103562569:-:L1HS:REF

chr3 103562364:103562549
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121310356236410356239810356240310356240510356240910356241410356243210356246710356249810356250710356251010356251610356253310356254951015read count

chr3:108749400-108755425:+:L1HS:REF

chr3 108749400:108749599
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617108749400108749414108749430108749447108749453108749456108749465108749496108749531108749549108749554108749558108749560108749565108749575108749599read count

chr3:109199872-109205903:+:L1HS:REF

chr3 109199872:109200077
methylatedunmethylatedunknownpositionproportionpatterns12345671091998721091998931091999091091999261091999321091999351091999441092000091092000271092000321092000361092000381092000431092000531092000771.01.52.02.53.0read count

chr3:110888814-110890548:+:L1HS:REF

chr3 110888833:110889017
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192011088883311088885011088886611088887211088887511088888411088891411088896511088896711088897211088897611088897811088898311088899311088901751015read count

chr3:116359999-116366026:+:L1HS:REF

chr3 116360017:116360201
methylatedunmethylatedunknownpositionproportionpatterns12345116360017116360033116360050116360056116360059116360068116360133116360151116360156116360160116360162116360167116360177116360201510152025read count

chr3:120573021-120579186:+:L1HS:REF

chr3 120573034:120573186
methylatedunmethylatedunknownpositionproportionpatterns12345671205730341205730501205730731205730761205730851205731161205731511205731531205731751205731862468read count

chr3:123871878-123871880:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567892238556164731041391571621661681731832071234567read count

chr3:132118781-132118783:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435363738394041422238556164731041391571621661681731832071.01.52.02.53.03.54.0read count

chr3:132946006-132952034:-:L1HS:REF

chr3 132951831:132952016
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141329518311329518551329518651329518701329518721329518761329518811329518991329519341329519541329519651329519741329519771329519831329520001329520162468read count

chr3:136479056-136485103:-:L1HS:REF

chr3 136484898:136485083
methylatedunmethylatedunknownpositionproportionpatterns12313648489813648492213648493213648493713648493913648494313648494813648495013648500113648503213648504113648504413648505013648506713648508310203040read count

chr3:136963693-136969736:-:L1HS:REF

chr3 136969518:136969716
methylatedunmethylatedunknownpositionproportionpatterns12345136969518136969542136969552136969557136969559136969563136969568136969586136969621136969652136969661136969664136969670136969687136969716204060read count

chr3:139590956-139596035:+:L1HS:REF

chr3 139590976:139591161
methylatedunmethylatedunknownpositionproportionpatterns12345678910111395909761395909921395910151395910271395910581395910931395911111395911161395911201395911221395911271395911371395911615101520read count

chr3:151430754-151430756:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345678922385561647310413915716216616817318320751015read count

chr3:158019676-158025704:+:L1HS:REF

chr3 158019697:158019882
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314158019697158019713158019736158019739158019748158019779158019814158019832158019837158019841158019843158019848158019858158019882123456read count

chr3:159095379-159101394:-:L1HS:REF

chr3 159101190:159101374
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233343536371591011901591012141591012241591012291591012311591012351591012401591012581591012931591013231591013321591013351591013581591013741.01.52.02.53.0read count

chr3:163236941-163242962:+:L1HS:REF

chr3 163236941:163237141
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121316323694116323695616323697216323698916323699516323699816323700716323703816323707316323709116323709616323710016323710216323710716323711716323714151015read count

chr3:164291525-164296426:+:L1HS:REF

chr3 164291546:164291731
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122231642915461642915851642915881642916791642916811642916861642916881642916901642916921642916971642917241642917312468read count

chr3:190964647-190965526:-:L1HS:REF

chr3 190965339:190965524
methylatedunmethylatedunknownpositionproportionpatterns12345678910111219096533919096534619096537319096537819096538419096538919096539119096540719096544219096547319096548219096548519096550819096552451015read count

chr4:14755114-14761144:+:L1HS:REF

chr4 14755133:14755318
methylatedunmethylatedunknownpositionproportionpatterns123456789147551331475514914755166147551721475517514755215147552501475526614755268147552791475528414755294147553182468101214read count

chr4:15841546-15847572:+:L1HS:REF

chr4 15841546:15841752
methylatedunmethylatedunknownpositionproportionpatterns12345158415461584154915841567158415831584160015841606158416091584161815841649158416841584170715841711158417131584171815841728158417521.01.52.02.53.03.54.0read count

chr4:16942776-16944630:+:L1HS:REF

chr4 16942795:16942979
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181694279516942811169428281694283416942837169428461694287616942911169429291694293416942938169429401694294516942955169429791.01.21.41.61.82.0read count

chr4:19077911-19083929:-:L1HS:REF

chr4 19083726:19083911
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233343536373819083726190837501908376019083767190837711908377619083794190838291908386019083869190838721908387819083895190839111.01.52.02.53.0read count

chr4:23614771-23620793:+:L1HS:REF

chr4 23614792:23614978
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232423614792236148082361482523614834236148752361491023614928236149332361493723614939236149442361495423614978123456read count

chr4:48051954-48057974:-:L1HS:REF

chr4 48057781:48057966
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314480577814805781548057820480578224805782648057833480578494805788448057915480579244805792748057933480579504805796651015read count

chr4:52538471-52544498:+:L1HS:REF

chr4 52538490:52538675
methylatedunmethylatedunknownpositionproportionpatterns123456789101112525384905253850652538523525385295253853252538541525386075253863052538634525386365253864152538651525386752468101214read count

chr4:52816456-52822486:+:L1HS:REF

chr4 52816477:52816662
methylatedunmethylatedunknownpositionproportionpatterns1234567891011528164775281649352816510528165165281651952816528528165595281659452816612528166175281662152816623528166285281663852816662246810read count

chr4:57562316-57568347:-:L1HS:REF

chr4 57568142:57568327
methylatedunmethylatedunknownpositionproportionpatterns123456789101112135756814257568166575681765756818157568183575681875756819257568210575682455756828557568288575682945756831157568327246810read count

chr4:59078847-59084877:+:L1HS:REF

chr4 59078865:59079050
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021225907886559078881590788985907890459078907590789165907894759078982590790005907900559079009590790115907901659079026590790502468read count

chr4:61939927-61945962:-:L1HS:REF

chr4 61945757:61945942
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151661945757619457816194579161945796619457986194580261945807619458256194586061945891619459006194590361945909619459422468read count

chr4:62726948-62732969:-:L1HS:REF

chr4 62732765:62732950
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333462732765627327896273279962732804627328066273281062732815627328336273286862732899627329086273291162732917627329501.01.52.02.53.0read count

chr4:68707019-68707021:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345672238556164731041391571621661681731832071.01.52.02.53.0read count

chr4:70015396-70019676:-:L1HS:REF

chr4 70019471:70019640
methylatedunmethylatedunknownpositionproportionpatterns123456789101112137001947170019495700195057001952170019574700196057001961770019623700196402468read count

chr4:74717539-74723587:-:L1HS:REF

chr4 74723382:74723567
methylatedunmethylatedunknownpositionproportionpatterns1234567891011747233827472340674723416747234237472342774723432747234507472348574723516747235257472352874723534747235517472356751015read count

chr4:78105735-78111765:+:L1HS:REF

chr4 78105755:78105940
methylatedunmethylatedunknownpositionproportionpatterns1234567891078105755781057717810578878105794781057977810580678105837781058727810588878105890781058957810589978105901781059067810594024681012read count

chr4:79704552-79710581:+:L1HS:REF

chr4 79704570:79704755
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213797045707970458679704603797046097970461279704621797046527970468779704703797047057970471079704714797047167970472179704731797047551.01.52.02.53.03.54.0read count

chr4:79937715-79943746:+:L1HS:REF

chr4 79937734:79937918
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213147993773479937750799377677993777379937776799377857993781579937850799378687993787379937879799378847993789479937918246810read count

chr4:79966907-79972933:+:L1HS:REF

chr4 79966907:79967111
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223247996690779966927799669607996696679966969799669787996700879967043799670617996706679967070799670727996707779967087799671111234567read count

chr4:87347103-87353146:-:L1HS:REF

chr4 87352942:87353126
methylatedunmethylatedunknownpositionproportionpatterns1234587352942873529668735297687352981873529838735298787352992873530108735304587353075873530848735308787353093873531108735312610203040read count

chr4:91437491-91443691:+:L1HS:REF

chr4 91437510:91437696
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223249143751091437526914375439143754991437561914376279143764691437655914376629143767291437696246810read count

chr4:91978211-91984413:+:L1HS:REF

chr4 91978211:91978393
methylatedunmethylatedunknownpositionproportionpatterns1234569197821191978232919782489197826591978271919782839197834991978367919783729197837691978378919783839197839324681012read count

chr4:93608283-93614338:-:L1HS:REF

chr4 93614133:93614318
methylatedunmethylatedunknownpositionproportionpatterns12345678936141339361415793614172936141749361417893614183936142019361426793614276936142799361428593614302936143185101520read count

chr4:93638307-93644337:-:L1HS:REF

chr4 93644134:93644318
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516936441349364415893644168936441739364417593644179936441849364420293644237936442679364427693644279936442859364430293644318123456read count

chr4:98592435-98598463:-:L1HS:REF

chr4 98598258:98598443
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324259859825898598282985982929859829798598299985983039859830898598326985983619859839298598401985984049859841098598427985984431.01.52.02.53.0read count

chr4:106571057-106577070:-:L1HS:REF

chr4 106576868:106577053
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121310657686810657689210657690210657690710657690910657691310657691810657693610657700210657701110657701410657702010657703710657705312345read count

chr4:110690112-110693684:-:L1HS:REF

chr4 110693489:110693667
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131106934891106935061106935211106935271106935321106935341106935851106936251106936281106936671234567read count

chr4:111894801-111900831:+:L1HS:REF

chr4 111894820:111895005
methylatedunmethylatedunknownpositionproportionpatterns12345678111894820111894836111894853111894859111894862111894902111894937111894953111894960111894966111894971111894981111895005246810read count

chr4:119948726-119954758:-:L1HS:REF

chr4 119954577:119954738
methylatedunmethylatedunknownpositionproportionpatterns12345678910111199545771199545921199545941199545981199546031199546211199546561199546871199546961199546991199547051199547221199547385101520read count

chr4:131260491-131260493:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516223855616473104139157162166168173183207123456read count

chr4:135178140-135183747:-:L1HS:REF

chr4 135183555:135183733
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718191351835551351835871351835891351835931351835981351836121351836161351836511351836821351836941351837001351837171351837332468read count

chr4:136293494-136299546:-:L1HS:REF

chr4 136299344:136299528
methylatedunmethylatedunknownpositionproportionpatterns1234567891013629934413629936813629937813629938313629938513629938913629939413629941213629944713629947713629948613629948913629949513629951213629952810203040read count

chr4:137496278-137500000:+:L1HS:REF

chr4 137496287:137496472
methylatedunmethylatedunknownpositionproportionpatterns1234567891374962871374963031374963201374963261374963291374963381374963691374964041374964201374964221374964261374964331374964381374964481374964725101520read count

chr4:144809658-144810951:+:L1HS:REF

chr4 144809679:144809864
methylatedunmethylatedunknownpositionproportionpatterns12345678910111448096791448097121448097181448097301448097611448097961448098121448098141448098191448098231448098251448098301448098401448098641.01.52.02.53.03.54.0read count

chr4:146304143-146304145:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234223855616473104139157162166168173183207102030read count

chr4:166449405-166449678:-:L1HS:REF

chr4 166449477:166449662
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718166449477166449501166449511166449516166449518166449522166449527166449545166449580166449611166449620166449623166449646166449662246810read count

chr4:166569976-166576007:+:L1HS:REF

chr4 166569997:166570181
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131665699971665700131665700301665700361665700391665700481665700781665701131665701311665701361665701401665701421665701471665701571665701812468read count

chr4:166755895-166761908:+:L1HS:REF

chr4 166755911:166756079
methylatedunmethylatedunknownpositionproportionpatterns1234567891667559111667559281667559341667559371667559461667559761667560111667560291667560341667560381667560401667560451667560551667560795101520read count

chr4:166850455-166851634:+:L1HS:REF

chr4 166850455:166850659
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131668504551668504741668505071668505161668505561668505871668506071668506141668506181668506201668506351668506521668506592468read count

chr4:169515501-169521532:-:L1HS:REF

chr4 169521328:169521512
methylatedunmethylatedunknownpositionproportionpatterns123456169521328169521351169521361169521366169521368169521372169521377169521395169521430169521461169521470169521473169521479169521496169521512204060read count

chr4:189137085-189143104:+:L1HS:REF

chr4 189137100:189137285
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021221891371001891371161891371331891371391891371421891371511891371821891372171891372331891372351891372401891372441891372461891372511891372611891372851.01.52.02.53.03.54.0read count

chr5:4500001-4502372:-:L1HS:REF

chr5 4502167:4502352
methylatedunmethylatedunknownpositionproportionpatterns123456789104502167450219145022014502212450221745022194502235450227045023014502310450233645023525101520read count

chr5:13416497-13422525:+:L1HS:REF

chr5 13416518:13416703
methylatedunmethylatedunknownpositionproportionpatterns1234567813416518134165341341655113416560134165691341660013416635134166531341665813416662134166641341666913416679134166871341670351015202530read count

chr5:15906515-15912550:-:L1HS:REF

chr5 15912346:15912515
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141515912346159123701591238015912385159123871591239115912396159124141591244915912480159124891591249215912498159125151.01.21.41.61.82.0read count

chr5:34147845-34154031:+:L1HS:REF

chr5 34147845:34148048
methylatedunmethylatedunknownpositionproportionpatterns123453414784534147864341478803414789734147903341479063414791534147945341479803414799834148007341480093414801434148048204060read count

chr5:52086499-52088220:-:L1HS:REF

chr5 52088022:52088209
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131452088022520880395208805452088056520880655208808352088149520882091234567read count

chr5:66750283-66754219:+:L1HS:REF

chr5 66750304:66750488
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415667503046675033766750343667503466675035566750385667504206675043666750443667504496675045466750464667504881.01.52.02.53.0read count

chr5:79778884-79784938:-:L1HS:REF

chr5 79784739:79784924
methylatedunmethylatedunknownpositionproportionpatterns123456787978473979784763797847737978477879784784797847897978479179784807797848427978487379784882797848857978489179784908797849245101520read count

chr5:81616090-81622140:+:L1HS:REF

chr5 81616109:81616294
methylatedunmethylatedunknownpositionproportionpatterns123816161098161612581616142816161488161615181616160816161918161622681616244816162498161625381616255816162608161627081616294204060read count

chr5:86510690-86516743:+:L1HS:REF

chr5 86510711:86510896
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314158651071186510744865107508651075386510762865107938651082886510846865108518651085586510857865108628651087286510896246810read count

chr5:90154963-90154965:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415162238556164731041391571621661681731832071.01.21.41.61.82.0read count

chr5:102131356-102137385:+:L1HS:REF

chr5 102131377:102131562
methylatedunmethylatedunknownpositionproportionpatterns12345610213137710213139310213141010213141610213141910213145910213149410213151210213151710213152110213152310213152810213153810213156212345read count

chr5:102189483-102194435:+:L1HS:REF

chr5 102189502:102189687
methylatedunmethylatedunknownpositionproportionpatterns1234567891021895021021895181021895351021895411021895441021895531021895841021896191021896371021896421021896461021896481021896531021896631021896871.01.52.02.53.0read count

chr5:105513236-105519274:-:L1HS:REF

chr5 105519069:105519254
methylatedunmethylatedunknownpositionproportionpatterns12345678910111210551906910551909310551910310551910810551911410551911910551913710551917210551920310551921210551921510551922110551923810551925424681012read count

chr5:109259387-109265418:+:L1HS:REF

chr5 109259408:109259592
methylatedunmethylatedunknownpositionproportionpatterns1234567810925940810925942410925944110925944710925945010925945910925948910925952410925954210925954710925955110925955310925955810925956810925959251015read count

chr5:111302238-111308262:+:L1HS:REF

chr5 111302252:111302437
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151113022521113022681113022851113022911113022941113023031113023341113023691113023871113023921113023961113024031113024131113024371.01.52.02.53.03.54.0read count

chr5:113367383-113367385:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324223855616473104139157162166168173183207read count

chr5:116113364-116113366:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234522385561647310413915716216616817318320710203040read count

chr5:119684785-119690814:-:L1HS:REF

chr5 119690612:119690797
methylatedunmethylatedunknownpositionproportionpatterns12345678910111211969061211969063611969064611969065111969065311969065711969066411969068011969071511969075511969078111969079751015read count

chr5:133583288-133589299:+:L1HS:REF

chr5 133583306:133583489
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819201335833061335833221335833391335833451335833481335833571335833881335834231335834391335834441335834481335834501335834551335834651335834891.01.21.41.61.82.0read count

chr5:146609485-146615534:+:L1HS:REF

chr5 146609500:146609685
methylatedunmethylatedunknownpositionproportionpatterns12345146609500146609516146609533146609539146609542146609551146609582146609617146609635146609640146609644146609646146609651146609661146609685246810read count

chr5:152886441-152892473:-:L1HS:REF

chr5 152892268:152892453
methylatedunmethylatedunknownpositionproportionpatterns12345678910111215289226815289229215289230215289230715289230915289233615289237115289240215289241115289241415289242015289243715289245312345read count

chr5:153070982-153077008:-:L1HS:REF

chr5 153076809:153076994
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121530768091530768331530768431530768481530768501530768541530768771530769121530769431530769521530769551530769611530769781530769941.01.52.02.53.0read count

chr5:156061919-156067966:-:L1HS:REF

chr5 156067762:156067946
methylatedunmethylatedunknownpositionproportionpatterns1234567891015606776215606778615606779615606780115606780315606780715606781215606783015606786515606789515606790415606790715606791315606793015606794651015read count

chr5:160709608-160715639:-:L1HS:REF

chr5 160715436:160715621
methylatedunmethylatedunknownpositionproportionpatterns1231607154361607154601607154701607154751607154771607154811607154861607155041607155391607155701607155791607155821607155881607156051607156212468read count

chr5:162530742-162531677:-:L1HS:REF

chr5 162531476:162531644
methylatedunmethylatedunknownpositionproportionpatterns12345671625314761625315001625315171625315791625316001625316091625316211625316441020304050read count

chr5:166141191-166145692:-:L1HS:REF

chr5 166145506:166145691
methylatedunmethylatedunknownpositionproportionpatterns12345678910111661455061661455401661455451661455471661455521661455561661455581661455741661456091661456401661456491661456521661456581661456751661456911.01.52.02.53.0read count

chr5:166966760-166972815:-:L1HS:REF

chr5 166972613:166972798
methylatedunmethylatedunknownpositionproportionpatterns1234567816697261316697263716697264716697265216697265416697265816697266316697268116697271616697275616697275916697276516697278216697279824681012read count

chr5:173402796-173408828:-:L1HS:REF

chr5 173408623:173408808
methylatedunmethylatedunknownpositionproportionpatterns123451734086231734086471734086571734086621734086641734086681734086731734086911734087261734087571734087661734087691734087751734087921734088081020304050read count

chr6:2417774-2423803:-:L1HS:REF

chr6 2423598:2423783
methylatedunmethylatedunknownpositionproportionpatterns1234567242359824236222423632242363724236392423643242364824236662423701242373224237412423744242375024237672423783204060read count

chr6:24811657-24817706:-:L1HS:REF

chr6 24817502:24817687
methylatedunmethylatedunknownpositionproportionpatterns12345672481750224817526248175362481754124817547248175522481757024817605248176362481764524817648248176542481767124817687102030405060read count

chr6:51874783-51880802:+:L1HS:REF

chr6 51874786:51874955
methylatedunmethylatedunknownpositionproportionpatterns12345678951874786518748035187480951874812518748215187485251874887518749055187491051874914518749165187492151874931518749551.01.52.02.53.0read count

chr6:69495362-69500000:+:L1HS:REF

chr6 69495422:69495534
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213694954226949542569495465694955166949552369495534102030read count

chr6:70010347-70016552:+:L1HS:REF

chr6 70010347:70010552
methylatedunmethylatedunknownpositionproportionpatterns1234567897001034770010368700103847001040170010407700104107001041970010449700104847001050270010507700105117001051370010517700105287001055212345read count

chr6:72988654-72994686:-:L1HS:REF

chr6 72994481:72994666
methylatedunmethylatedunknownpositionproportionpatterns1234567729944817299450572994520729945227299452672994531729945497299458472994615729946247299462772994633729946507299466651015202530read count

chr6:76875759-76877075:-:L1HS:REF

chr6 76876870:76877039
methylatedunmethylatedunknownpositionproportionpatterns12345678976876870768768947687690476876911768769157687692076876938768769737687700476877013768770227687703924681012read count

chr6:83333952-83339981:+:L1HS:REF

chr6 83333973:83334158
methylatedunmethylatedunknownpositionproportionpatterns1238333397383334006833340128333401583334024833340558333409083334106833341138333411783334119833341248333413483334158204060read count

chr6:86000000-86005073:-:L1HS:REF

chr6 86004869:86005053
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920218600486986004893860049038600490886004910860049148600491986004937860049728600500286005011860050148600502086005037860050532468read count

chr6:93865738-93871783:-:L1HS:REF

chr6 93871578:93871763
methylatedunmethylatedunknownpositionproportionpatterns12345679387157893871602938716129387161793871619938716469387168193871712938717219387172493871730938717479387176351015202530read count

chr6:94197995-94204060:-:L1HS:REF

chr6 94203855:94204040
methylatedunmethylatedunknownpositionproportionpatterns1234567894203855942038799420388994203894942038969420390094203905942039239420395894203989942039989420400194204007942040249420404051015202530read count

chr6:98703059-98708329:+:L1HS:REF

chr6 98703077:98703262
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920987030779870309398703110987031169870311998703128987031309870315998703194987032109870321798703221987032239870322898703238987032622468read count

chr6:112703745-112709778:+:L1HS:REF

chr6 112703766:112703951
methylatedunmethylatedunknownpositionproportionpatterns123456112703766112703782112703799112703805112703808112703848112703883112703901112703906112703910112703912112703917112703927112703951246810read count

chr6:117102131-117108163:+:L1HS:REF

chr6 117102152:117102313
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314117102152117102168117102185117102191117102194117102203117102234117102287117102296117102298117102303117102313123456read count

chr6:121162716-121168725:+:L1HS:REF

chr6 121162730:121162915
methylatedunmethylatedunknownpositionproportionpatterns12345612116273012116276312116276912116277212116281212116284712116286512116287012116287412116287612116288112116289112116291551015202530read count

chr6:156034135-156040165:+:L1HS:REF

chr6 156034156:156034340
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213156034156156034172156034189156034195156034198156034207156034237156034272156034290156034295156034299156034306156034340246810read count

chr6:156324980-156331010:-:L1HS:REF

chr6 156330805:156330990
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121563308051563308291563308391563308441563308461563308501563308551563308731563309081563309391563309511563309571563309741563309901234567read count

chr6:157547703-157547705:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345678223855616473104139157162166168173183207102030read count

chr7:7465092-7471120:+:L1HS:REF

chr7 7465092:7465297
methylatedunmethylatedunknownpositionproportionpatterns1234567465092746511374651297465146746515274651557465164746519574652307465233746524874652537465257746525974652647465274746529751015202530read count

chr7:8351723-8353975:+:L1HS:REF

chr7 8351743:8351929
methylatedunmethylatedunknownpositionproportionpatterns1234567883517438351783835178683517958351826835186183518798351890835190383519058351922835192951015read count

chr7:12497211-12500000:+:L1HS:REF

chr7 12497232:12497417
methylatedunmethylatedunknownpositionproportionpatterns121249723212497248124972711249727412497283124973141249736512497372124973761249737812497393124974101249741720406080100120read count

chr7:25041860-25047891:-:L1HS:REF

chr7 25047686:25047871
methylatedunmethylatedunknownpositionproportionpatterns123456725047686250477102504772025047725250477272504773125047736250477542504776825047789250478202504782925047832250478552504787151015202530read count

chr7:30439242-30445274:+:L1HS:REF

chr7 30439263:30439448
methylatedunmethylatedunknownpositionproportionpatterns12345304392633043927930439296304393023043930530439314304393453043936630439380304393963043939830439403304394073043940930439414304394243043944851015202530read count

chr7:49680245-49686300:-:L1HS:REF

chr7 49686097:49686281
methylatedunmethylatedunknownpositionproportionpatterns1234567894968609749686121496861314968613649686138496861424968614749686165496862004968623049686239496862424968624849686265496862811.01.21.41.61.82.0read count

chr7:57539590-57540834:+:L1HS:REF

chr7 57539647:57539790
methylatedunmethylatedunknownpositionproportionpatterns123456789101112575396475753965657539745575397495753975657539783575397905101520read count

chr7:63148831-63154859:-:L1HS:REF

chr7 63154654:63154839
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213631546546315467863154688631546936315469563154699631547046315470663154722631547576315478863154797631548006315480663154823631548391234567read count

chr7:66286853-66292884:-:L1HS:REF

chr7 66292679:66292864
methylatedunmethylatedunknownpositionproportionpatterns12345676629267966292703662927136629271866292720662927246629272966292747662927826629281366292822662928256629283166292848662928645101520read count

chr7:67126183-67126185:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123223855616473104139157162166168173183207510152025read count

chr7:70197328-70203357:+:L1HS:REF

chr7 70197349:70197534
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435367019734970197365701973827019738870197391701974007019743170197466701974847019748970197493701974957019750070197510701975341.01.52.02.53.03.54.0read count

chr7:97613656-97619688:+:L1HS:REF

chr7 97613677:97613862
methylatedunmethylatedunknownpositionproportionpatterns12345678997613677976136929761371097613716976137199761372897613759976137949761381297613817976138219761382397613828976138621.01.52.02.53.0read count

chr7:108188818-108188820:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617182238556164731041391571621661681731832072468read count

chr7:110707004-110713024:-:L1HS:REF

chr7 110712831:110713016
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121311071283111071286511071287011071287211071288111071289911071293411071296511071297411071298311071300011071301610203040read count

chr7:111243515-111249546:-:L1HS:REF

chr7 111249342:111249526
methylatedunmethylatedunknownpositionproportionpatterns123456711124934211124936611124937611124938111124938311124938711124939211124941011124944511124947511124948411124948711124949311124951011124952610203040read count

chr7:111963193-111969223:+:L1HS:REF

chr7 111963214:111963399
methylatedunmethylatedunknownpositionproportionpatterns123111963214111963230111963247111963253111963256111963296111963331111963349111963354111963358111963360111963375111963399102030405060read count

chr7:113776122-113782152:-:L1HS:REF

chr7 113781948:113782132
methylatedunmethylatedunknownpositionproportionpatterns123456789101111378194811378197211378198211378198711378198911378199311378199811378201611378205111378208111378209011378209311378209911378211611378213212345read count

chr7:125179570-125181978:-:L1HS:REF

chr7 125181774:125181959
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627125181774125181798125181808125181813125181815125181819125181842125181877125181908125181920125181926125181943125181959246810read count

chr7:125964725-125964727:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123452238556164731041391571621661681731832072468read count

chr7:140709367-140709369:-:L1HS:NONREF

chr7:140709367-140709369:-:L1HS:NONREF 38:207
methylatedunmethylatedunknownpositionproportionpatterns1233855616473104139157162166168173183207246810read count

chr7:141062014-141068042:-:L1HS:REF

chr7 141067837:141068022
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121410678371410678611410678711410678781410678821410678871410678891410679051410679401410679711410679801410679831410679891410680221.01.52.02.53.0read count

chr7:141920659-141926712:-:L1HS:REF

chr7 141926508:141926692
methylatedunmethylatedunknownpositionproportionpatterns123456781419265081419265321419265421419265471419265491419265531419265581419265761419266111419266411419266501419266531419266591419266761419266921.01.52.02.53.03.54.0read count

chr7:147842591-147848623:-:L1HS:REF

chr7 147848418:147848603
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819201478484181478484421478484521478484571478484631478484681478484861478485211478485521478485611478485701478485871478486032468read count

chr7:150597094-150602628:+:L1HS:REF

chr7 150597154:150597197
methylatedunmethylatedunknownpositionproportionpatterns1231505971541505971661505971972468read count

chr8:8470859-8476906:+:L1HS:REF

chr8 8470880:8471065
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213148470880847089684709138470919847092284709318470962847101384710158471020847102484710268471031847104184710651.01.52.02.53.0read count

chr8:27113618-27119645:+:L1HS:REF

chr8 27113635:27113820
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415162711363527113651271136682711367427113677271136862711371727113752271137702711377527113779271137812711378627113796271138201.01.52.02.53.03.54.0read count

chr8:75621331-75627355:-:L1HS:REF

chr8 75627151:75627336
methylatedunmethylatedunknownpositionproportionpatterns12345678756271517562718575627190756271927562719675627219756272387562725475627285756272947562729775627320756273361.01.52.02.53.03.54.0read count

chr8:88685705-88691760:+:L1HS:REF

chr8 88685705:88685911
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920886857058868574288685759886857658868576888685777886858088868584388685861886858708868587288685877886858878868591124681012read count

chr8:91522091-91528121:-:L1HS:REF

chr8 91527919:91528087
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425269152791991527943915279539152795891527960915279649152796991527987915280229152805291528061915280649152807091528087123456read count

chr8:104739851-104745873:-:L1HS:REF

chr8 104745668:104745853
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121047456681047456921047457071047457131047457181047457361047457711047458021047458111047458141047458201047458301047458371047458531.01.52.02.53.03.54.0read count

chr8:121329878-121334807:-:L1HS:REF

chr8 121334614:121334799
methylatedunmethylatedunknownpositionproportionpatterns1234121334614121334621121334638121334648121334664121334666121334682121334717121334748121334757121334760121334766121334783121334799204060read count

chr8:127311575-127315431:+:L1HS:REF

chr8 127311575:127311739
methylatedunmethylatedunknownpositionproportionpatterns1231273115751273116111273116281273116341273116371273116391273116681273116771273117301273117351273117391020304050read count

chr8:134070756-134076773:-:L1HS:REF

chr8 134076570:134076754
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181340765701340765941340766041340766091340766111340766151340766201340766381340766731340767031340767121340767151340767211340767381340767541.01.21.41.61.82.0read count

chr8:135875862-135881890:+:L1HS:REF

chr8 135875883:135876068
methylatedunmethylatedunknownpositionproportionpatterns123456789101358758831358758991358759221358759251358759341358759651358760001358760181358760231358760271358760291358760341358760441358760681.01.52.02.53.0read count

chr8:136438074-136444105:-:L1HS:REF

chr8 136443900:136444085
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181364439001364439241364439341364439391364439411364439451364439501364439681364440341364440431364440461364440521364440691364440855101520read count

chr9:5491417-5491419:+:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151622385561647310413915716216616817318320712345read count

chr9:20655632-20658802:-:L1HS:REF

chr9 20658600:20658784
methylatedunmethylatedunknownpositionproportionpatterns123456789102065860020658624206586342065863920658641206586452065866820658703206587332065874520658751206587682065878451015202530read count

chr9:28111895-28117865:-:L1HS:REF

chr9 28117732:28117835
methylatedunmethylatedunknownpositionproportionpatterns123456789101112281177322811776628117771281177732811777728117782281178002811783524681012read count

chr9:83049539-83055571:-:L1HS:REF

chr9 83055366:83055551
methylatedunmethylatedunknownpositionproportionpatterns123456789101183055366830553908305540083055405830554078305541183055416830554188305543483055446830554538305546983055500830555098305551283055518830555358305555151015202530read count

chr9:90149604-90155634:+:L1HS:REF

chr9 90149624:90149809
methylatedunmethylatedunknownpositionproportionpatterns1234567891011901496249014964090149657901496639014966690149675901497069014974190149759901497649014977090149775901497859014980951015read count

chr9:94113535-94119565:-:L1HS:REF

chr9 94119361:94119546
methylatedunmethylatedunknownpositionproportionpatterns123494119361941193859411939594119400941194029411940694119411941194299411946494119495941195049411950794119513941195309411954610203040read count

chr9:95697585-95703604:+:L1HS:REF

chr9 95697600:95697785
methylatedunmethylatedunknownpositionproportionpatterns123456789956976009569761695697633956976399569764295697651956976829569771795697735956977409569774695697751956977619569778512345read count

chr9:99498741-99500000:+:L1HS:REF

chr9 99498761:99498946
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617189949876199498794994988009949880399498812994988439949887899498894994988969949890199498905994989079949891299498922994989461234567read count

chr9:103237485-103241471:+:L1HS:REF

chr9 103237538:103237690
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151032375381032375471032375561032376381032376491032376511032376561032376841032376881032376902468101214read count

chr9:110417102-110423126:+:L1HS:REF

chr9 110417123:110417308
methylatedunmethylatedunknownpositionproportionpatterns12345678910110417123110417139110417156110417162110417165110417174110417205110417233110417240110417258110417263110417267110417269110417274110417284110417308read count

chr9:110791097-110797129:+:L1HS:REF

chr9 110791118:110791303
methylatedunmethylatedunknownpositionproportionpatterns123456789101111079111811079113411079115111079115711079116011079116911079120011079123511079125311079125811079126211079126411079126911079127911079130324681012read count

chr9:112798107-112804159:-:L1HS:REF

chr9 112803958:112804142
methylatedunmethylatedunknownpositionproportionpatterns12345678910112803958112803982112803992112803997112803999112804003112804008112804026112804061112804091112804100112804103112804109112804126112804142102030read count

chr10:5245354-5251383:+:L1HS:REF

chr10 5245374:5245559
methylatedunmethylatedunknownpositionproportionpatterns1234567891011125245374524539052454075245413524541652454255245456524549152455095245514524551852455205245525524553552455595101520read count

chr10:6369617-6375667:-:L1HS:REF

chr10 6375462:6375647
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021226375462637548663754966375501637550363755076375512637553063755656375596637560563756086375614637563163756471.01.52.02.53.03.54.0read count

chr10:19088601-19094618:-:L1HS:REF

chr10 19094413:19094582
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021190944131909443719094447190944521909445419094458190944811909451619094547190945561909455919094565190945821.01.52.02.53.0read count

chr10:25418756-25418758:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252238556164731041391571621661681731832071.01.52.02.53.03.54.0read count

chr10:33510845-33516876:-:L1HS:REF

chr10 33516672:33516857
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627283351667233516696335167063351671133516713335167173351672233516740335167753351680633516815335168183351682433516841335168572468read count

chr10:37995443-38000000:+:L1HS:REF

chr10 37995478:37995634
methylatedunmethylatedunknownpositionproportionpatterns123456789101112379954783799549537995501379955043799551337995544379955793799559537995600379956342468read count

chr10:81441665-81441975:-:L1HS:REF

chr10 81441782:81441967
methylatedunmethylatedunknownpositionproportionpatterns12345678814417828144180681441816814418278144183281441834814418508144186181441885814419168144192881441934814419672468read count

chr10:85355506-85361538:+:L1HS:REF

chr10 85355527:85355712
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161785355527853555438535556085355566853555698535557885355609853556448535566285355667853556718535567885355688853557122468read count

chr10:98782941-98788971:-:L1HS:REF

chr10 98788766:98788951
methylatedunmethylatedunknownpositionproportionpatterns123456789987887669878879098788800987888059878881198788816987888699878890098788909987889129878891898788935987889512468101214read count

chr10:105377346-105383377:-:L1HS:REF

chr10 105383173:105383357
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718105383173105383197105383207105383212105383214105383218105383223105383241105383306105383315105383318105383324105383341105383357123456read count

chr10:105775520-105781551:-:L1HS:REF

chr10 105781346:105781531
methylatedunmethylatedunknownpositionproportionpatterns123451057813461057813701057813801057813871057813911057814141057814491057814801057814891057814921057814981057815151057815312468read count

chr10:108310130-108316139:-:L1HS:REF

chr10 108315955:108316124
methylatedunmethylatedunknownpositionproportionpatterns12345671083159551083159791083159891083159941083159961083160001083160071083160231083160581083160981083161011083161071083161241020304050read count

chr10:129670136-129670138:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101122385561647310413915716216616817318320724681012read count

chr11:5914493-5918448:+:L1HS:REF

chr11 5914502:5914688
methylatedunmethylatedunknownpositionproportionpatterns12345678959145025914535591458459146385914643591464759146885101520read count

chr11:24327951-24334001:+:L1HS:REF

chr11 24327971:24328155
methylatedunmethylatedunknownpositionproportionpatterns1234567891024327971243279872432800424328010243280132432802224328052243280872432810524328110243281142432811624328121243281312432815551015read count

chr11:25500009-25502139:-:L1HS:REF

chr11 25501955:25502103
methylatedunmethylatedunknownpositionproportionpatterns1234567891011122550195525501958255019682550197325501975255019792550198625502002255020372550206825502086255021031.01.52.02.53.03.54.0read count

chr11:31315654-31321680:-:L1HS:REF

chr11 31321476:31321661
methylatedunmethylatedunknownpositionproportionpatterns12345673132147631321500313215103132151531321517313215213132154431321579313216103132161931321622313216283132164531321661246810read count

chr11:36551606-36557636:-:L1HS:REF

chr11 36557432:36557617
methylatedunmethylatedunknownpositionproportionpatterns1234563655743236557456365574663655747136557473365574773655748236557484365575003655753536557566365575753655757836557584365576013655761724681012read count

chr11:48847694-48853724:-:L1HS:REF

chr11 48853519:48853704
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415164885351948853553488535584885356448853569488536224885365348853671488536884885370424681012read count

chr11:54849946-54851079:+:L1HS:REF

chr11 54849960:54850145
methylatedunmethylatedunknownpositionproportionpatterns123456789105484996054849993548499995485000254850042548500775485010054850104548501115485012154850145246810read count

chr11:78677772-78683802:-:L1HS:REF

chr11 78683599:78683784
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314157868359978683623786836337868363878683640786836447868364978683651786836677868370278683742786837457868375178683768786837842468101214read count

chr11:82155865-82161891:+:L1HS:REF

chr11 82155865:82156064
methylatedunmethylatedunknownpositionproportionpatterns123821558658215587982155895821559128215591882155921821559308215596182155996821560148215601982156023821560258215603082156040821560641.01.52.02.53.0read count

chr11:85324758-85330821:+:L1HS:REF

chr11 85324779:85324964
methylatedunmethylatedunknownpositionproportionpatterns123456789101112138532477985324795853248128532481885324821853248308532486185324896853249148532491985324923853249258532493085324940853249641.01.52.02.53.03.54.0read count

chr11:87340031-87346061:-:L1HS:REF

chr11 87345856:87346041
methylatedunmethylatedunknownpositionproportionpatterns12345678987345856873458808734589087345895873458978734590187345906873459248734595987345990873459998734600287346008873460258734604124681012read count

chr11:90400067-90406098:-:L1HS:REF

chr11 90405894:90406079
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121390405894904059189040592890405935904059399040594490405962904059979040602890406037904060409040604690406063904060791.01.52.02.53.0read count

chr11:90966271-90972302:-:L1HS:REF

chr11 90972097:90972282
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617909720979097212190972131909721369097213890972142909721659097220090972231909722409097224390972249909722821.01.52.02.53.03.54.0read count

chr11:93136638-93142673:+:L1HS:REF

chr11 93136659:93136843
methylatedunmethylatedunknownpositionproportionpatterns12345693136659931366759313669293136698931367019313671093136740931367759313679393136798931368029313680493136809931368199313684310203040read count

chr11:95436216-95442246:+:L1HS:REF

chr11 95436236:95436420
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233343536373839409543623695436252954362699543627595436278954362879543631795436352954363709543637595436379954363819543638695436396954364201.01.52.02.53.03.54.0read count

chr11:108685166-108685556:-:L1HS:REF

chr11 108685353:108685538
methylatedunmethylatedunknownpositionproportionpatterns12345678108685353108685377108685387108685392108685394108685398108685403108685421108685456108685487108685496108685505108685522108685538204060read count

chr11:109177494-109183526:-:L1HS:REF

chr11 109183321:109183506
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425262728293031321091833211091833451091833551091833601091833621091833711091833891091834241091834551091834641091834671091834731091835062468read count

chr11:125536609-125542640:+:L1HS:REF

chr11 125536628:125536813
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131255366281255366441255366611255366671255366701255366791255367101255367451255367611255367681255367721255367791255367891255368131.01.52.02.53.0read count

chr12:3500000-3505228:-:L1HS:REF

chr12 3505023:3505208
methylatedunmethylatedunknownpositionproportionpatterns123456789101112350502335050473505057350506235050643505068350507335050913505126350515735051663505175350519235052081.01.52.02.53.03.54.0read count

chr12:28073478-28073480:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617223855616473104139157166168173183207246810read count

chr12:38799646-38805673:+:L1HS:REF

chr12 38799664:38799849
methylatedunmethylatedunknownpositionproportionpatterns1234563879966438799680387996973879970338799706387997153879974638799781387997973879979938799804387998083879981038799815387998253879984910203040read count

chr12:44108220-44114234:-:L1HS:REF

chr12 44114029:44114214
methylatedunmethylatedunknownpositionproportionpatterns1234567844114029441140534411406344114068441140704411407444114079441140974411413244114163441141724411417544114181441141984411421451015202530read count

chr12:51562631-51568657:-:L1HS:REF

chr12 51568456:51568637
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213145156845651568476515684865156849151568493515684975156850251568520515685555156858651568595515685985156860451568621515686371.01.52.02.53.03.54.0read count

chr12:54788573-54794627:+:L1HS:REF

chr12 54788573:54788776
methylatedunmethylatedunknownpositionproportionpatterns1547885735478859154788607547886245478863054788633547886425478867354788708547887265478873154788735547887375478874254788752547887761.01.52.02.53.0read count

chr12:55096256-55102283:-:L1HS:REF

chr12 55102078:55102263
methylatedunmethylatedunknownpositionproportionpatterns123456789101112551020785510210255102117551021195510212355102146551021815510221255102221551022245510223055102247551022631.01.52.02.53.03.54.0read count

chr12:69773410-69779441:-:L1HS:REF

chr12 69779236:69779421
methylatedunmethylatedunknownpositionproportionpatterns12345669779236697792606977927069779275697792776977928169779286697793046977933969779370697793796977938269779388697794056977942120406080100read count

chr12:73283667-73289668:-:L1HS:REF

chr12 73289487:73289648
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314157328948773289497732895027328950473289513732895317328956673289597732896067328960973289632732896482468101214read count

chr12:74874868-74880901:+:L1HS:REF

chr12 74874889:74875074
methylatedunmethylatedunknownpositionproportionpatterns12345748748897487492274874928748749317487494074874971748750067487502474875029748750337487503574875040748750507487507410203040read count

chr12:101146043-101152064:+:L1HS:REF

chr12 101146043:101146249
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425262728293031323334351011460431011460801011460971011461031011461061011461461011461811011461831011461971011462081011462151011462251011462491.01.52.02.53.0read count

chr12:108996947-109000000:+:L1HS:REF

chr12 108996968:108997153
methylatedunmethylatedunknownpositionproportionpatterns123456789101089969681089969841089970011089970071089970191089970501089970851089971011089971081089971121089971141089971191089971291089971531234567read count

chr12:126299023-126305038:-:L1HS:REF

chr12 126304837:126305021
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425261263048371263048611263048711263048761263048781263048821263048871263049051263049401263049701263049791263049821263049881263050051263050211.01.52.02.53.03.54.0read count

chr13:19496786-19500000:+:L1HS:REF

chr13 19496786:19496967
methylatedunmethylatedunknownpositionproportionpatterns123456789101949678619496807194968231949684019496846194968491949685119496923194969391949694119496946194969501949695219496957194969671.01.52.02.53.03.54.0read count

chr13:29641706-29647706:-:L1HS:REF

chr13 29647533:29647701
methylatedunmethylatedunknownpositionproportionpatterns123456789101112296475332964755729647567296475722964757429647578296475832964760129647636296476662964767529647678296476842964770151015read count

chr13:31302314-31308370:+:L1HS:REF

chr13 31302314:31302519
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617313023143130233431302350313023673130237331302376313023853130241631302451313024693130247431302478313024803130248531302495313025192468101214read count

chr13:34480262-34486294:-:L1HS:REF

chr13 34486089:34486274
methylatedunmethylatedunknownpositionproportionpatterns1234567891011344860893448611334486128344861303448613434486139344861573448619234486223344862323448623534486241344862583448627451015202530read count

chr13:48465555-48471566:+:L1HS:REF

chr13 48465565:48465750
methylatedunmethylatedunknownpositionproportionpatterns1234484655654846558148465598484656044846560748465616484656474846568248465700484657054846571148465716484657264846575010203040read count

chr13:54572234-54573121:+:L1HS:REF

chr13 54572254:54572443
methylatedunmethylatedunknownpositionproportionpatterns123456754572254545722705457228754572293545722965457230554572336545723715457237554572391545724025457240454572419545724431.01.52.02.53.0read count

chr13:74426326-74432354:+:L1HS:REF

chr13 74426341:74426526
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819207442634174426357744263747442638074426383744264237442645874426466744264767442648174426485744264877442649274426502744265261.01.52.02.53.0read count

chr13:76612823-76618851:-:L1HS:REF

chr13 76618646:76618831
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314157661864676618670766186857661868776618691766186967661871476618749766187807661878976618792766187987661881476618831246810read count

chr13:92685561-92691592:-:L1HS:REF

chr13 92691387:92691572
methylatedunmethylatedunknownpositionproportionpatterns1234592691387926914119269142192691426926914289269143292691437926914559269149092691521926915309269153392691539926915569269157210203040read count

chr13:97667408-97673440:-:L1HS:REF

chr13 97673235:97673420
methylatedunmethylatedunknownpositionproportionpatterns1234567891011129767323597673259976732699767327497673276976732809767328597673287976733039767333897673369976733789767338197673387976734201.01.52.02.53.0read count

chr13:105382665-105383251:-:L1HS:REF

chr13 105383056:105383234
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181053830561053830731053830831053830881053830901053831171053831521053831921053831951053832011053832342468101214read count

chr13:108510472-108516495:-:L1HS:REF

chr13 108516297:108516482
methylatedunmethylatedunknownpositionproportionpatterns1234561085162971085163211085163311085163361085163381085163421085163471085163491085163651085164311085164401085164431085164491085164661085164822468read count

chr14:18283818-18289864:-:L1HS:REF

chr14 18289659:18289844
methylatedunmethylatedunknownpositionproportionpatterns123456789101828965918289683182896981828970018289704182897091828972718289762182897931828980218289805182898111828982818289844read count

chr14:24948620-24948622:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192238556164731041391571621661681731832071.01.52.02.53.03.54.0read count

chr14:30684809-30690837:-:L1HS:REF

chr14 30690632:30690834
methylatedunmethylatedunknownpositionproportionpatterns123456730690632306906563069066630690671306906733069067730690682306907003069071430690735306907663069077530690778306907843069080130690817306908341020304050read count

chr14:44705080-44711104:-:L1HS:REF

chr14 44710899:44711084
methylatedunmethylatedunknownpositionproportionpatterns12345678910111244710899447109334471093844710940447109444471094944710951447109674471100244711032447110424471104544711068447110842468read count

chr14:45477110-45483169:-:L1HS:REF

chr14 45482988:45483149
methylatedunmethylatedunknownpositionproportionpatterns1234564548298845482998454830034548300945483014454830324548306745483107454831104548311645483133454831492468101214read count

chr14:46727484-46727758:-:L1HS:REF

chr14 46727554:46727739
methylatedunmethylatedunknownpositionproportionpatterns12345678910467275544672757846727588467275934672759546727599467276044672762246727657467276884672769746727700467277064672772346727739246810read count

chr14:48187082-48193113:+:L1HS:REF

chr14 48187103:48187288
methylatedunmethylatedunknownpositionproportionpatterns123456481871034818711948187136481871424818714548187154481871854818722048187238481872434818724748187254481872644818728824681012read count

chr14:51794601-51800632:-:L1HS:REF

chr14 51800428:51800613
methylatedunmethylatedunknownpositionproportionpatterns1234567851800428518004525180046251800467518004695180047351800478518004965180056251800571518005745180058051800597518006132468read count

chr14:52201038-52201040:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121322385561647310413915716216616817318320724681012read count

chr14:61055116-61061148:-:L1HS:REF

chr14 61060943:61061128
methylatedunmethylatedunknownpositionproportionpatterns123456786106094361060967610609776106098261060984610609886106099361060995610610116106104661061077610610866106108961061095610611126106112851015202530read count

chr14:62535851-62541882:+:L1HS:REF

chr14 62535870:62536055
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121362535870625358866253590362535909625359126253592162535952625359876253600562536010625360146253601662536021625360316253605551015read count

chr14:63116706-63122735:-:L1HS:REF

chr14 63122530:63122715
methylatedunmethylatedunknownpositionproportionpatterns126312253063122554631225646312256963122571631225756312258063122598631226336312266463122673631226766312268263122699631227151020304050read count

chr14:70547290-70553322:+:L1HS:REF

chr14 70547311:70547496
methylatedunmethylatedunknownpositionproportionpatterns12345678910117054731170547327705473447054735070547353705473627054739370547428705474467054745170547455705474577054746270547472705474965101520read count

chr14:79314060-79314943:+:L1HS:REF

chr14 79314072:79314257
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272879314072793140887931410579314111793141147931412379314154793141897931420579314207793142127931421679314218793142237931423379314257123456read count

chr15:47215130-47215132:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233343536373822385561647310413915716216616817318320712345read count

chr15:51417216-51423246:-:L1HS:REF

chr15 51423042:51423227
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213145142304251423066514230765142308151423083514230875142309251423110514231455142317651423185514231885142319451423211514232272468101214read count

chr15:54926081-54932099:-:L1HS:REF

chr15 54931895:54932080
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718549318955493191954931929549319345493193654931940549319455493196354931998549320295493203854932041549320475493206454932080246810read count

chr15:82882881-82888919:-:L1HS:REF

chr15 82888716:82888900
methylatedunmethylatedunknownpositionproportionpatterns123456789101182888716828887408288875582888757828887618288876682888784828888198288884982888858828888618288886782888884828889001.01.52.02.53.03.54.0read count

chr15:83450804-83456834:-:L1HS:REF

chr15 83456630:83456815
methylatedunmethylatedunknownpositionproportionpatterns12345678834566308345665483456664834566698345667183456675834566808345669883456733834567648345677383456776834567828345679983456815246810read count

chr15:87509891-87515920:+:L1HS:REF

chr15 87509909:87510094
methylatedunmethylatedunknownpositionproportionpatterns123456787509909875099258750994287509948875099518750996087509991875100268751004487510049875100538751005587510060875100708751009412345read count

chr16:9584490-9590522:-:L1HS:REF

chr16 9590317:9590502
methylatedunmethylatedunknownpositionproportionpatterns1234567891011129590317959034195903519590356959035895903629590367959038595904209590451959046095904639590469959048695905021.01.52.02.53.03.54.0read count

chr16:16840517-16846556:-:L1HS:REF

chr16 16846363:16846548
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121316846363168463871684639716846402168464041684640816846413168464311684646616846497168465061684650916846515168465321684654812345read count

chr16:32587481-32588397:-:L1HS:REF

chr16 32588216:32588377
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213143258821632588226325882423258832632588338325883443258836132588377510152025read count

chr16:33952564-33958612:-:L1HS:REF

chr16 33958408:33958592
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526273395840833958432339584423395844733958449339584533395845833958476339585113395854133958550339585533395855933958576339585921.01.52.02.53.0read count

chr16:34118474-34119193:+:L1HS:REF

chr16 34118489:34118635
methylatedunmethylatedunknownpositionproportionpatterns1233411848934118540341186352468101214read count

chr16:54042096-54048145:+:L1HS:REF

chr16 54042114:54042299
methylatedunmethylatedunknownpositionproportionpatterns12345404211454042130540421475404215654042165540421965404223154042249540422545404225854042260540422655404227554042299204060read count

chr16:65690011-65696020:+:L1HS:REF

chr16 65690019:65690170
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192065690019656900356569005265690058656900616569007065690101656901546569015965690163656901702468read count

chr16:68583448-68589505:-:L1HS:REF

chr16 68589300:68589485
methylatedunmethylatedunknownpositionproportionpatterns12345678968589300685893246858933468589339685893416858934568589350685893686858940368589434685894436858945268589469685894855101520read count

chr16:80727089-80730717:+:L1HS:REF

chr16 80727137:80727289
methylatedunmethylatedunknownpositionproportionpatterns123480727137807271468072715580727186807272398072724480727250807272658072728280727289204060read count

chr16:83637252-83643296:+:L1HS:REF

chr16 83637252:83637470
methylatedunmethylatedunknownpositionproportionpatterns12345678836372528363727183637287836373048363731083637328836373378363736783637402836374208363742583637429836374318363743683637446836374705101520read count

chr17:9615985-9622015:+:L1HS:REF

chr17 9616006:9616191
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425961600696160229616039961604596160489616057961608896161239616139961614196161469616150961615296161579616167961619112345read count

chr17:66596579-66602595:-:L1HS:REF

chr17 66602390:66602575
methylatedunmethylatedunknownpositionproportionpatterns123456666023906660241466602424666024296660243166602435666024406660245866602493666025246660253366602536666025426660255966602575102030read count

chr17:69000000-69005148:-:L1HS:REF

chr17 69004943:69005142
methylatedunmethylatedunknownpositionproportionpatterns123456789101169004943690049506900496769004977690049826900499369004995690050116900504669005077690050866900508969005112690051286900514251015read count

chr17:70458956-70464987:+:L1HS:REF

chr17 70458977:70459161
methylatedunmethylatedunknownpositionproportionpatterns123456789101112704589777045899370459010704590167045901970459028704590587045909370459111704591167045912070459122704591277045913770459161102030read count

chr18:535701-541755:+:L1HS:REF

chr18 535721:535905
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526275357215357375357545357605357635357725358015358375358535358555358605358665358715358815358985359051.01.52.02.53.03.54.0read count

chr18:4477329-4478177:+:L1HS:REF

chr18 4477348:4477533
methylatedunmethylatedunknownpositionproportionpatterns12345678944773484477364447738144773874477390447739944774304477451447748144774834477488447749244774944477499447750944775331.01.52.02.53.03.54.0read count

chr18:5684668-5687891:+:L1HS:REF

chr18 5684688:5684873
methylatedunmethylatedunknownpositionproportionpatterns12345678568468856847045684721568472756847305684739568477056848055684821568482856848325684839568484956848731.01.52.02.53.0read count

chr18:13975860-13981891:-:L1HS:REF

chr18 13981686:13981871
methylatedunmethylatedunknownpositionproportionpatterns1234567813981686139817101398172013981725139817271398173113981736139817381398175413981789139818201398182913981832139818381398185513981871246810read count

chr18:37819737-37825798:+:L1HS:REF

chr18 37819758:37819943
methylatedunmethylatedunknownpositionproportionpatterns12345673781975837819774378197913781979737819800378198403781987537819893378198983781990237819904378199093781991937819943246810read count

chr18:41775014-41781045:+:L1HS:REF

chr18 41775035:41775220
methylatedunmethylatedunknownpositionproportionpatterns12345678941775035417750524177506841775074417750774177508641775117417751524177517041775179417751814177518641775196417752205101520read count

chr18:44021279-44024826:-:L1HS:REF

chr18 44024621:44024806
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718440246214402462844024662440246714402468944024724440247554402476744024806246810read count

chr18:47660373-47666427:+:L1HS:REF

chr18 47660391:47660576
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920214766039147660407476604244766043047660433476604424766047347660508476605264766053147660535476605374766054247660552476605761.01.52.02.53.0read count

chr18:50343959-50349987:-:L1HS:REF

chr18 50349808:50349969
methylatedunmethylatedunknownpositionproportionpatterns12345678503498085034981850349823503498255034982950349852503498875034992750349930503499365034995350349969510152025read count

chr18:53899354-53899356:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516171819202122232425262728293031323334352238556164731041391571621661681731832071.01.21.41.61.82.0read count

chr18:62906292-62912314:+:L1HS:REF

chr18 62906313:62906498
methylatedunmethylatedunknownpositionproportionpatterns1234562906313629063296290634662906352629063556290636462906395629064306290645762906459629064646290647462906498102030405060read count

chr18:67603633-67605600:+:L1HS:REF

chr18 67603633:67603837
methylatedunmethylatedunknownpositionproportionpatterns1234567603633676036536760366967603686676036926760370367603734676037696760378567603792676038375101520read count

chr18:70746549-70752581:-:L1HS:REF

chr18 70752376:70752561
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233343536373870752376707524007075241070752417707524217075242670752444707524797075251070752519707525227075252870752545707525611.01.52.02.53.0read count

chr18:72966526-72972556:-:L1HS:REF

chr18 72972351:72972536
methylatedunmethylatedunknownpositionproportionpatterns12345678910111272972351729723757297238572972390729723927297240172972419729724547297248572972497729725037297253612345read count

chr18:75846851-75852883:+:L1HS:REF

chr18 75846872:75847057
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526277584687275846888758469057584691175846914758469237584695475846989758470077584701275847016758470187584702375847033758470571.01.52.02.53.0read count

chr19:43864494-43867300:-:L1HS:REF

chr19 43867132:43867292
methylatedunmethylatedunknownpositionproportionpatterns123456789101112134386713243867149438671534386715843867160438671764386721143867241438672504386725343867259438672684386727643867292246810read count

chr20:7116194-7122199:-:L1HS:REF

chr20 7121995:7122180
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718197121995712201971220297122034712203671220457122063712209871221297122138712214171221477122164712218051015read count

chr20:11632779-11638837:+:L1HS:REF

chr20 11632796:11632981
methylatedunmethylatedunknownpositionproportionpatterns123456789101112116327961163281211632829116328351163283811632847116328781163291311632931116329361163294011632942116329471163295711632981102030read count

chr20:12801017-12807044:-:L1HS:REF

chr20 12806842:12807027
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324251280684212806866128068761280688112806883128068871280689212806910128069451280697612806985128069881280699412807011128070271.01.21.41.61.82.0read count

chr21:22253869-22253871:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns12345678910111213141516172238556164731041391571621661681731832071.01.52.02.53.0read count

chr22:15214621-15220667:-:L1HS:REF

chr22 15220462:15220647
methylatedunmethylatedunknownpositionproportionpatterns123456789101115220462152204861522050115220503152205071522051215220530152205651522059615220605152206081522061415220631152206471.01.21.41.61.82.0read count

chr22:28663283-28669315:+:L1HS:REF

chr22 28663304:28663489
methylatedunmethylatedunknownpositionproportionpatterns12328663304286633202866333728663343286633552866338628663421286634392866344428663448286634502866345528663465286634891020304050read count

chr22:34549683-34555708:-:L1HS:REF

chr22 34555503:34555689
methylatedunmethylatedunknownpositionproportionpatterns12345634555503345555273455554234555544345555483455555534555571345556063455562434555637345556473455565034555656345556892468101214read count

chr22:48985761-48991792:-:L1HS:REF

chr22 48991587:48991772
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132333435363738394041424348991587489916114899162148991626489916284899163248991637489916554899172148991730489917334899173948991756489917721.01.52.02.53.03.54.0read count

chrX:11935296-11941314:-:L1HS:REF

chrX 11941110:11941294
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131411941110119411341194114411941149119411511194115511941160119411781194121311941243119412521194125511941261119412781194129424681012read count

chrX:23238516-23244575:+:L1HS:REF

chrX 23238516:23238722
methylatedunmethylatedunknownpositionproportionpatterns123456232385162323853723238553232385702323857623238579232385882323861923238670232386722323867723238681232386832323868823238698232387221.01.52.02.53.0read count

chrX:26314417-26320446:-:L1HS:REF

chrX 26320243:26320428
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121326320243263202672632027726320282263202842632029326320311263203462632037726320386263203892632039526320412263204281.01.52.02.53.03.54.0read count

chrX:50019456-50025505:-:L1HS:REF

chrX 50025300:50025485
methylatedunmethylatedunknownpositionproportionpatterns123456750025300500253245002533450025339500253415002534550025350500253525002536850025403500254345002544350025446500254525002546950025485102030405060read count

chrX:54118685-54124744:-:L1HS:REF

chrX 54124564:54124725
methylatedunmethylatedunknownpositionproportionpatterns1234567891054124564541245745412457954124581541245855412459054124608541246435412467454124683541246865412469254124709541247255101520read count

chrX:56695884-56701916:+:L1HS:REF

chrX 56695905:56696090
methylatedunmethylatedunknownpositionproportionpatterns1234567895669590556695921566959385669594456695947566959565669598756696022566960405669604556696049566960565669606656696090123456read count

chrX:64013267-64019286:-:L1HS:REF

chrX 64019081:64019266
methylatedunmethylatedunknownpositionproportionpatterns1234567896401908164019105640191156401912064019122640191266401913164019149640191846401921564019224640192276401923364019250640192661.01.52.02.53.03.54.0read count

chrX:66180696-66186728:-:L1HS:REF

chrX 66186531:66186708
methylatedunmethylatedunknownpositionproportionpatterns12345678910661865316618655766186562661865646618657366186591661866266618665766186666661866696618667566186692661867081.01.21.41.61.82.0read count

chrX:73106142-73112170:+:L1HS:REF

chrX 73106163:73106348
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161773106163731061967310620273106205731062147310624573106280731062987310630373106307731063097310631473106324731063482468read count

chrX:73380991-73387013:+:L1HS:REF

chrX 73381003:73381188
methylatedunmethylatedunknownpositionproportionpatterns123456789107338100373381019733810367338104273381045733810857338112073381138733811437338114773381149733811547338118851015read count

chrX:76233354-76239154:+:L1HS:REF

chrX 76233368:76233524
methylatedunmethylatedunknownpositionproportionpatterns123456789762333687623338476233401762334107623349076233494762335242468read count

chrX:76322775-76328806:-:L1HS:REF

chrX 76328614:76328799
methylatedunmethylatedunknownpositionproportionpatterns1234567632861476328638763286487632865376328655763286597632866476328682763287177632874876328757763287607632876676328783763287991.01.52.02.53.0read count

chrX:80905077-80905430:-:L1HS:REF

chrX 80905251:80905396
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617188090525180905266809052778090529580905330809053618090537080905373809053961.01.52.02.53.03.54.0read count

chrX:83059584-83065637:-:L1HS:REF

chrX 83065432:83065617
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233348306543283065456830654668306547183065473830654778306548283065500830655358306556683065575830655788306558483065601830656171.01.52.02.53.03.54.0read count

chrX:83542396-83548420:+:L1HS:REF

chrX 83542415:83542600
methylatedunmethylatedunknownpositionproportionpatterns1234567891011128354241583542431835424488354245483542457835424668354249783542532835425508354255583542559835425618354256683542576835425848354260012345read count

chrX:83838051-83839860:-:L1HS:REF

chrX 83839657:83839842
methylatedunmethylatedunknownpositionproportionpatterns123456789101183839657838396648383968183839691838396988383970283839709838397258383976083839800838398038383984212345read count

chrX:85733685-85734499:+:L1HS:REF

chrX 85733764:85733807
methylatedunmethylatedunknownpositionproportionpatterns123485733764857337758573380710203040read count

chrX:87821407-87827419:+:L1HS:REF

chrX 87821428:87821613
methylatedunmethylatedunknownpositionproportionpatterns123456789101112138782142887821444878214618782146787821470878214798782151087821545878215638782156887821572878215748782157987821589878216131.01.52.02.53.0read count

chrX:92254241-92256469:-:L1HS:REF

chrX 92256271:92256449
methylatedunmethylatedunknownpositionproportionpatterns123456789109225627192256303922563059225630992256367922564109225643392256449102030read count

chrX:96057824-96063842:-:L1HS:REF

chrX 96063638:96063823
methylatedunmethylatedunknownpositionproportionpatterns1234567960636389606366296063672960636799606368396063688960637069606374196063781960637849606379096063807960638231234567read count

chrX:106469285-106475319:+:L1HS:REF

chrX 106469305:106469490
methylatedunmethylatedunknownpositionproportionpatterns123451064693051064693211064693381064693441064693471064693561064693871064694221064694401064694451064694491064694511064694561064694661064694902468read count

chrX:112314520-112314522:-:L1HS:NONREF

L1HS 22:207
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161718192021222324252627282930313233342238556164731041391571621661681731832071.01.21.41.61.82.0read count

chrX:119435468-119441493:-:L1HS:REF

chrX 119441291:119441475
methylatedunmethylatedunknownpositionproportionpatterns123456119441291119441315119441325119441330119441332119441336119441341119441359119441394119441424119441433119441436119441442119441459119441475102030405060read count

chrX:127362223-127368248:+:L1HS:REF

chrX 127362243:127362428
methylatedunmethylatedunknownpositionproportionpatterns1234561273622431273622591273622761273622821273622851273623251273623601273623781273623871273623891273623941273624041273624281.01.52.02.53.03.54.0read count

chrX:130517377-130523407:+:L1HS:REF

chrX 130517396:130517581
methylatedunmethylatedunknownpositionproportionpatterns123456789101112131415161305173961305174121305174291305174351305174381305174471305174781305175131305175311305175401305175421305175471305175571305175812468101214read count

chrX:142477849-142483853:+:L1HS:REF

chrX 142477865:142478050
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829142477865142477881142477898142477904142477907142477916142477982142478000142478005142478009142478011142478016142478026142478050246810read count

chrX:147653734-147659767:+:L1HS:REF

chrX 147653734:147653940
methylatedunmethylatedunknownpositionproportionpatterns12345678914765373414765375514765377114765378814765379414765379714765380614765383714765387214765389014765389514765389914765390614765391614765394012345read count

chrX:149178166-149184185:-:L1HS:REF

chrX 149183992:149184177
methylatedunmethylatedunknownpositionproportionpatterns1234567891491839921491840261491840311491840331491840371491840421491840601491840951491841261491841381491841441491841611491841772468read count

chrX:151330320-151336351:+:L1HS:REF

chrX 151330341:151330525
methylatedunmethylatedunknownpositionproportionpatterns1234567891011121314151617181920212223242526272829303132151330341151330357151330374151330383151330392151330423151330458151330474151330481151330485151330487151330491151330501151330525123456read count

chrX:155516016-155522048:-:L1HS:REF

chrX 155521843:155522028
methylatedunmethylatedunknownpositionproportionpatterns123456155521843155521867155521877155521882155521884155521888155521893155521911155521946155521977155521986155521989155521995155522012155522028102030405060read count

Visualisation settings

Methylation patterns

Histogram

Colour

Amplicon order

Drag the amplicon names up or down to reorder their display.

  • ↕ chr1:34566055-34572105:-:L1HS:REF
  • ↕ chr1:65390008-65390010:-:L1HS:NONREF
  • ↕ chr1:67078891-67084915:-:L1HS:REF
  • ↕ chr1:68736693-68740136:-:L1HS:REF
  • ↕ chr1:77000000-77005515:-:L1HS:REF
  • ↕ chr1:78485728-78485730:+:L1HS:NONREF
  • ↕ chr1:85748519-85754548:+:L1HS:REF
  • ↕ chr1:85927067-85933100:+:L1HS:REF
  • ↕ chr1:86679080-86685111:-:L1HS:REF
  • ↕ chr1:102103367-102103369:+:L1HS:NONREF
  • ↕ chr1:104770247-104776278:-:L1HS:REF
  • ↕ chr1:104843833-104849864:-:L1HS:REF
  • ↕ chr1:105315153-105315155:-:L1HS:NONREF
  • ↕ chr1:113497220-113500000:+:L1HS:REF
  • ↕ chr1:118852351-118858380:+:L1HS:REF
  • ↕ chr1:121532230-121538261:-:L1HS:REF
  • ↕ chr1:146717192-146723218:-:L1HS:REF
  • ↕ chr1:166243053-166249084:-:L1HS:REF
  • ↕ chr1:174590323-174596379:-:L1HS:REF
  • ↕ chr1:179606225-179606227:-:L1HS:NONREF
  • ↕ chr1:180866811-180872843:-:L1HS:REF
  • ↕ chr1:184845616-184851641:+:L1HS:REF
  • ↕ chr1:187343764-187349794:-:L1HS:REF
  • ↕ chr1:187597671-187603699:+:L1HS:REF
  • ↕ chr1:193717837-193723892:-:L1HS:REF
  • ↕ chr1:196219370-196225402:-:L1HS:REF
  • ↕ chr1:197707714-197713746:+:L1HS:REF
  • ↕ chr1:197802331-197803141:+:L1HS:REF
  • ↕ chr1:209913771-209919823:-:L1HS:REF
  • ↕ chr1:216485645-216487614:+:L1HS:REF
  • ↕ chr1:218009227-218015252:-:L1HS:REF
  • ↕ chr1:220245155-220246008:+:L1HS:REF
  • ↕ chr1:237019467-237025494:-:L1HS:REF
  • ↕ chr1:237075264-237081293:+:L1HS:REF
  • ↕ chr1:239623498-239629523:-:L1HS:REF
  • ↕ chr2:11000000-11002136:-:L1HS:REF
  • ↕ chr2:16593725-16599758:-:L1HS:REF
  • ↕ chr2:35654287-35654289:+:L1HS:NONREF
  • ↕ chr2:36112506-36118537:-:L1HS:REF
  • ↕ chr2:68941762-68941764:-:L1HS:NONREF
  • ↕ chr2:71411474-71417501:-:L1HS:REF
  • ↕ chr2:81870918-81870920:+:L1HS:NONREF
  • ↕ chr2:86655238-86661268:-:L1HS:REF
  • ↕ chr2:102566355-102572385:-:L1HS:REF
  • ↕ chr2:112503812-112509845:-:L1HS:REF
  • ↕ chr2:126178048-126184064:-:L1HS:REF
  • ↕ chr2:129415687-129417400:-:L1HS:REF
  • ↕ chr2:143253223-143253225:+:L1HS:NONREF
  • ↕ chr2:143860956-143866987:+:L1HS:REF
  • ↕ chr2:148188745-148194773:+:L1HS:REF
  • ↕ chr2:153007766-153013796:-:L1HS:REF
  • ↕ chr2:157566353-157572377:+:L1HS:REF
  • ↕ chr2:169248623-169254656:+:L1HS:REF
  • ↕ chr2:172315270-172321297:+:L1HS:REF
  • ↕ chr2:175481951-175487994:-:L1HS:REF
  • ↕ chr2:177973073-177979090:+:L1HS:REF
  • ↕ chr2:180833661-180839689:-:L1HS:REF
  • ↕ chr2:193170704-193171720:+:L1HS:REF
  • ↕ chr2:193212420-193218448:-:L1HS:REF
  • ↕ chr2:196905587-196911636:+:L1HS:REF
  • ↕ chr2:230337069-230342513:-:L1HS:REF
  • ↕ chr2:232149196-232155229:-:L1HS:REF
  • ↕ chr3:3963076-3969110:+:L1HS:REF
  • ↕ chr3:4916534-4922591:+:L1HS:REF
  • ↕ chr3:11488672-11492490:-:L1HS:REF
  • ↕ chr3:17858274-17861391:-:L1HS:REF
  • ↕ chr3:18516080-18520244:+:L1HS:REF
  • ↕ chr3:20707402-20707404:-:L1HS:NONREF
  • ↕ chr3:26036528-26042769:-:L1HS:REF
  • ↕ chr3:26398017-26404045:-:L1HS:REF
  • ↕ chr3:29108111-29112113:-:L1HS:REF
  • ↕ chr3:35454617-35458296:+:L1HS:REF
  • ↕ chr3:46315213-46315215:+:L1HS:NONREF
  • ↕ chr3:46783105-46789138:-:L1HS:REF
  • ↕ chr3:54394322-54400323:-:L1HS:REF
  • ↕ chr3:77763677-77769678:-:L1HS:REF
  • ↕ chr3:82337499-82339442:+:L1HS:REF
  • ↕ chr3:89460825-89466856:-:L1HS:REF
  • ↕ chr3:90169567-90175598:-:L1HS:REF
  • ↕ chr3:103556537-103562569:-:L1HS:REF
  • ↕ chr3:108749400-108755425:+:L1HS:REF
  • ↕ chr3:109199872-109205903:+:L1HS:REF
  • ↕ chr3:110888814-110890548:+:L1HS:REF
  • ↕ chr3:116359999-116366026:+:L1HS:REF
  • ↕ chr3:120573021-120579186:+:L1HS:REF
  • ↕ chr3:123871878-123871880:+:L1HS:NONREF
  • ↕ chr3:132118781-132118783:-:L1HS:NONREF
  • ↕ chr3:132946006-132952034:-:L1HS:REF
  • ↕ chr3:136479056-136485103:-:L1HS:REF
  • ↕ chr3:136963693-136969736:-:L1HS:REF
  • ↕ chr3:139590956-139596035:+:L1HS:REF
  • ↕ chr3:151430754-151430756:-:L1HS:NONREF
  • ↕ chr3:158019676-158025704:+:L1HS:REF
  • ↕ chr3:159095379-159101394:-:L1HS:REF
  • ↕ chr3:163236941-163242962:+:L1HS:REF
  • ↕ chr3:164291525-164296426:+:L1HS:REF
  • ↕ chr3:190964647-190965526:-:L1HS:REF
  • ↕ chr4:14755114-14761144:+:L1HS:REF
  • ↕ chr4:15841546-15847572:+:L1HS:REF
  • ↕ chr4:16942776-16944630:+:L1HS:REF
  • ↕ chr4:19077911-19083929:-:L1HS:REF
  • ↕ chr4:23614771-23620793:+:L1HS:REF
  • ↕ chr4:48051954-48057974:-:L1HS:REF
  • ↕ chr4:52538471-52544498:+:L1HS:REF
  • ↕ chr4:52816456-52822486:+:L1HS:REF
  • ↕ chr4:57562316-57568347:-:L1HS:REF
  • ↕ chr4:59078847-59084877:+:L1HS:REF
  • ↕ chr4:61939927-61945962:-:L1HS:REF
  • ↕ chr4:62726948-62732969:-:L1HS:REF
  • ↕ chr4:68707019-68707021:-:L1HS:NONREF
  • ↕ chr4:70015396-70019676:-:L1HS:REF
  • ↕ chr4:74717539-74723587:-:L1HS:REF
  • ↕ chr4:78105735-78111765:+:L1HS:REF
  • ↕ chr4:79704552-79710581:+:L1HS:REF
  • ↕ chr4:79937715-79943746:+:L1HS:REF
  • ↕ chr4:79966907-79972933:+:L1HS:REF
  • ↕ chr4:87347103-87353146:-:L1HS:REF
  • ↕ chr4:91437491-91443691:+:L1HS:REF
  • ↕ chr4:91978211-91984413:+:L1HS:REF
  • ↕ chr4:93608283-93614338:-:L1HS:REF
  • ↕ chr4:93638307-93644337:-:L1HS:REF
  • ↕ chr4:98592435-98598463:-:L1HS:REF
  • ↕ chr4:106571057-106577070:-:L1HS:REF
  • ↕ chr4:110690112-110693684:-:L1HS:REF
  • ↕ chr4:111894801-111900831:+:L1HS:REF
  • ↕ chr4:119948726-119954758:-:L1HS:REF
  • ↕ chr4:131260491-131260493:-:L1HS:NONREF
  • ↕ chr4:135178140-135183747:-:L1HS:REF
  • ↕ chr4:136293494-136299546:-:L1HS:REF
  • ↕ chr4:137496278-137500000:+:L1HS:REF
  • ↕ chr4:144809658-144810951:+:L1HS:REF
  • ↕ chr4:146304143-146304145:+:L1HS:NONREF
  • ↕ chr4:166449405-166449678:-:L1HS:REF
  • ↕ chr4:166569976-166576007:+:L1HS:REF
  • ↕ chr4:166755895-166761908:+:L1HS:REF
  • ↕ chr4:166850455-166851634:+:L1HS:REF
  • ↕ chr4:169515501-169521532:-:L1HS:REF
  • ↕ chr4:189137085-189143104:+:L1HS:REF
  • ↕ chr5:4500001-4502372:-:L1HS:REF
  • ↕ chr5:13416497-13422525:+:L1HS:REF
  • ↕ chr5:15906515-15912550:-:L1HS:REF
  • ↕ chr5:34147845-34154031:+:L1HS:REF
  • ↕ chr5:52086499-52088220:-:L1HS:REF
  • ↕ chr5:66750283-66754219:+:L1HS:REF
  • ↕ chr5:79778884-79784938:-:L1HS:REF
  • ↕ chr5:81616090-81622140:+:L1HS:REF
  • ↕ chr5:86510690-86516743:+:L1HS:REF
  • ↕ chr5:90154963-90154965:+:L1HS:NONREF
  • ↕ chr5:102131356-102137385:+:L1HS:REF
  • ↕ chr5:102189483-102194435:+:L1HS:REF
  • ↕ chr5:105513236-105519274:-:L1HS:REF
  • ↕ chr5:109259387-109265418:+:L1HS:REF
  • ↕ chr5:111302238-111308262:+:L1HS:REF
  • ↕ chr5:113367383-113367385:+:L1HS:NONREF
  • ↕ chr5:116113364-116113366:-:L1HS:NONREF
  • ↕ chr5:119684785-119690814:-:L1HS:REF
  • ↕ chr5:133583288-133589299:+:L1HS:REF
  • ↕ chr5:146609485-146615534:+:L1HS:REF
  • ↕ chr5:152886441-152892473:-:L1HS:REF
  • ↕ chr5:153070982-153077008:-:L1HS:REF
  • ↕ chr5:156061919-156067966:-:L1HS:REF
  • ↕ chr5:160709608-160715639:-:L1HS:REF
  • ↕ chr5:162530742-162531677:-:L1HS:REF
  • ↕ chr5:166141191-166145692:-:L1HS:REF
  • ↕ chr5:166966760-166972815:-:L1HS:REF
  • ↕ chr5:173402796-173408828:-:L1HS:REF
  • ↕ chr6:2417774-2423803:-:L1HS:REF
  • ↕ chr6:24811657-24817706:-:L1HS:REF
  • ↕ chr6:51874783-51880802:+:L1HS:REF
  • ↕ chr6:69495362-69500000:+:L1HS:REF
  • ↕ chr6:70010347-70016552:+:L1HS:REF
  • ↕ chr6:72988654-72994686:-:L1HS:REF
  • ↕ chr6:76875759-76877075:-:L1HS:REF
  • ↕ chr6:83333952-83339981:+:L1HS:REF
  • ↕ chr6:86000000-86005073:-:L1HS:REF
  • ↕ chr6:93865738-93871783:-:L1HS:REF
  • ↕ chr6:94197995-94204060:-:L1HS:REF
  • ↕ chr6:98703059-98708329:+:L1HS:REF
  • ↕ chr6:112703745-112709778:+:L1HS:REF
  • ↕ chr6:117102131-117108163:+:L1HS:REF
  • ↕ chr6:121162716-121168725:+:L1HS:REF
  • ↕ chr6:156034135-156040165:+:L1HS:REF
  • ↕ chr6:156324980-156331010:-:L1HS:REF
  • ↕ chr6:157547703-157547705:-:L1HS:NONREF
  • ↕ chr7:7465092-7471120:+:L1HS:REF
  • ↕ chr7:8351723-8353975:+:L1HS:REF
  • ↕ chr7:12497211-12500000:+:L1HS:REF
  • ↕ chr7:25041860-25047891:-:L1HS:REF
  • ↕ chr7:30439242-30445274:+:L1HS:REF
  • ↕ chr7:49680245-49686300:-:L1HS:REF
  • ↕ chr7:57539590-57540834:+:L1HS:REF
  • ↕ chr7:63148831-63154859:-:L1HS:REF
  • ↕ chr7:66286853-66292884:-:L1HS:REF
  • ↕ chr7:67126183-67126185:-:L1HS:NONREF
  • ↕ chr7:70197328-70203357:+:L1HS:REF
  • ↕ chr7:97613656-97619688:+:L1HS:REF
  • ↕ chr7:108188818-108188820:+:L1HS:NONREF
  • ↕ chr7:110707004-110713024:-:L1HS:REF
  • ↕ chr7:111243515-111249546:-:L1HS:REF
  • ↕ chr7:111963193-111969223:+:L1HS:REF
  • ↕ chr7:113776122-113782152:-:L1HS:REF
  • ↕ chr7:125179570-125181978:-:L1HS:REF
  • ↕ chr7:125964725-125964727:-:L1HS:NONREF
  • ↕ chr7:140709367-140709369:-:L1HS:NONREF
  • ↕ chr7:141062014-141068042:-:L1HS:REF
  • ↕ chr7:141920659-141926712:-:L1HS:REF
  • ↕ chr7:147842591-147848623:-:L1HS:REF
  • ↕ chr7:150597094-150602628:+:L1HS:REF
  • ↕ chr8:8470859-8476906:+:L1HS:REF
  • ↕ chr8:27113618-27119645:+:L1HS:REF
  • ↕ chr8:75621331-75627355:-:L1HS:REF
  • ↕ chr8:88685705-88691760:+:L1HS:REF
  • ↕ chr8:91522091-91528121:-:L1HS:REF
  • ↕ chr8:104739851-104745873:-:L1HS:REF
  • ↕ chr8:121329878-121334807:-:L1HS:REF
  • ↕ chr8:127311575-127315431:+:L1HS:REF
  • ↕ chr8:134070756-134076773:-:L1HS:REF
  • ↕ chr8:135875862-135881890:+:L1HS:REF
  • ↕ chr8:136438074-136444105:-:L1HS:REF
  • ↕ chr9:5491417-5491419:+:L1HS:NONREF
  • ↕ chr9:20655632-20658802:-:L1HS:REF
  • ↕ chr9:28111895-28117865:-:L1HS:REF
  • ↕ chr9:83049539-83055571:-:L1HS:REF
  • ↕ chr9:90149604-90155634:+:L1HS:REF
  • ↕ chr9:94113535-94119565:-:L1HS:REF
  • ↕ chr9:95697585-95703604:+:L1HS:REF
  • ↕ chr9:99498741-99500000:+:L1HS:REF
  • ↕ chr9:103237485-103241471:+:L1HS:REF
  • ↕ chr9:110417102-110423126:+:L1HS:REF
  • ↕ chr9:110791097-110797129:+:L1HS:REF
  • ↕ chr9:112798107-112804159:-:L1HS:REF
  • ↕ chr10:5245354-5251383:+:L1HS:REF
  • ↕ chr10:6369617-6375667:-:L1HS:REF
  • ↕ chr10:19088601-19094618:-:L1HS:REF
  • ↕ chr10:25418756-25418758:-:L1HS:NONREF
  • ↕ chr10:33510845-33516876:-:L1HS:REF
  • ↕ chr10:37995443-38000000:+:L1HS:REF
  • ↕ chr10:81441665-81441975:-:L1HS:REF
  • ↕ chr10:85355506-85361538:+:L1HS:REF
  • ↕ chr10:98782941-98788971:-:L1HS:REF
  • ↕ chr10:105377346-105383377:-:L1HS:REF
  • ↕ chr10:105775520-105781551:-:L1HS:REF
  • ↕ chr10:108310130-108316139:-:L1HS:REF
  • ↕ chr10:129670136-129670138:-:L1HS:NONREF
  • ↕ chr11:5914493-5918448:+:L1HS:REF
  • ↕ chr11:24327951-24334001:+:L1HS:REF
  • ↕ chr11:25500009-25502139:-:L1HS:REF
  • ↕ chr11:31315654-31321680:-:L1HS:REF
  • ↕ chr11:36551606-36557636:-:L1HS:REF
  • ↕ chr11:48847694-48853724:-:L1HS:REF
  • ↕ chr11:54849946-54851079:+:L1HS:REF
  • ↕ chr11:78677772-78683802:-:L1HS:REF
  • ↕ chr11:82155865-82161891:+:L1HS:REF
  • ↕ chr11:85324758-85330821:+:L1HS:REF
  • ↕ chr11:87340031-87346061:-:L1HS:REF
  • ↕ chr11:90400067-90406098:-:L1HS:REF
  • ↕ chr11:90966271-90972302:-:L1HS:REF
  • ↕ chr11:93136638-93142673:+:L1HS:REF
  • ↕ chr11:95436216-95442246:+:L1HS:REF
  • ↕ chr11:108685166-108685556:-:L1HS:REF
  • ↕ chr11:109177494-109183526:-:L1HS:REF
  • ↕ chr11:125536609-125542640:+:L1HS:REF
  • ↕ chr12:3500000-3505228:-:L1HS:REF
  • ↕ chr12:28073478-28073480:-:L1HS:NONREF
  • ↕ chr12:38799646-38805673:+:L1HS:REF
  • ↕ chr12:44108220-44114234:-:L1HS:REF
  • ↕ chr12:51562631-51568657:-:L1HS:REF
  • ↕ chr12:54788573-54794627:+:L1HS:REF
  • ↕ chr12:55096256-55102283:-:L1HS:REF
  • ↕ chr12:69773410-69779441:-:L1HS:REF
  • ↕ chr12:73283667-73289668:-:L1HS:REF
  • ↕ chr12:74874868-74880901:+:L1HS:REF
  • ↕ chr12:101146043-101152064:+:L1HS:REF
  • ↕ chr12:108996947-109000000:+:L1HS:REF
  • ↕ chr12:126299023-126305038:-:L1HS:REF
  • ↕ chr13:19496786-19500000:+:L1HS:REF
  • ↕ chr13:29641706-29647706:-:L1HS:REF
  • ↕ chr13:31302314-31308370:+:L1HS:REF
  • ↕ chr13:34480262-34486294:-:L1HS:REF
  • ↕ chr13:48465555-48471566:+:L1HS:REF
  • ↕ chr13:54572234-54573121:+:L1HS:REF
  • ↕ chr13:74426326-74432354:+:L1HS:REF
  • ↕ chr13:76612823-76618851:-:L1HS:REF
  • ↕ chr13:92685561-92691592:-:L1HS:REF
  • ↕ chr13:97667408-97673440:-:L1HS:REF
  • ↕ chr13:105382665-105383251:-:L1HS:REF
  • ↕ chr13:108510472-108516495:-:L1HS:REF
  • ↕ chr14:18283818-18289864:-:L1HS:REF
  • ↕ chr14:24948620-24948622:-:L1HS:NONREF
  • ↕ chr14:30684809-30690837:-:L1HS:REF
  • ↕ chr14:44705080-44711104:-:L1HS:REF
  • ↕ chr14:45477110-45483169:-:L1HS:REF
  • ↕ chr14:46727484-46727758:-:L1HS:REF
  • ↕ chr14:48187082-48193113:+:L1HS:REF
  • ↕ chr14:51794601-51800632:-:L1HS:REF
  • ↕ chr14:52201038-52201040:-:L1HS:NONREF
  • ↕ chr14:61055116-61061148:-:L1HS:REF
  • ↕ chr14:62535851-62541882:+:L1HS:REF
  • ↕ chr14:63116706-63122735:-:L1HS:REF
  • ↕ chr14:70547290-70553322:+:L1HS:REF
  • ↕ chr14:79314060-79314943:+:L1HS:REF
  • ↕ chr15:47215130-47215132:-:L1HS:NONREF
  • ↕ chr15:51417216-51423246:-:L1HS:REF
  • ↕ chr15:54926081-54932099:-:L1HS:REF
  • ↕ chr15:82882881-82888919:-:L1HS:REF
  • ↕ chr15:83450804-83456834:-:L1HS:REF
  • ↕ chr15:87509891-87515920:+:L1HS:REF
  • ↕ chr16:9584490-9590522:-:L1HS:REF
  • ↕ chr16:16840517-16846556:-:L1HS:REF
  • ↕ chr16:32587481-32588397:-:L1HS:REF
  • ↕ chr16:33952564-33958612:-:L1HS:REF
  • ↕ chr16:34118474-34119193:+:L1HS:REF
  • ↕ chr16:54042096-54048145:+:L1HS:REF
  • ↕ chr16:65690011-65696020:+:L1HS:REF
  • ↕ chr16:68583448-68589505:-:L1HS:REF
  • ↕ chr16:80727089-80730717:+:L1HS:REF
  • ↕ chr16:83637252-83643296:+:L1HS:REF
  • ↕ chr17:9615985-9622015:+:L1HS:REF
  • ↕ chr17:66596579-66602595:-:L1HS:REF
  • ↕ chr17:69000000-69005148:-:L1HS:REF
  • ↕ chr17:70458956-70464987:+:L1HS:REF
  • ↕ chr18:535701-541755:+:L1HS:REF
  • ↕ chr18:4477329-4478177:+:L1HS:REF
  • ↕ chr18:5684668-5687891:+:L1HS:REF
  • ↕ chr18:13975860-13981891:-:L1HS:REF
  • ↕ chr18:37819737-37825798:+:L1HS:REF
  • ↕ chr18:41775014-41781045:+:L1HS:REF
  • ↕ chr18:44021279-44024826:-:L1HS:REF
  • ↕ chr18:47660373-47666427:+:L1HS:REF
  • ↕ chr18:50343959-50349987:-:L1HS:REF
  • ↕ chr18:53899354-53899356:-:L1HS:NONREF
  • ↕ chr18:62906292-62912314:+:L1HS:REF
  • ↕ chr18:67603633-67605600:+:L1HS:REF
  • ↕ chr18:70746549-70752581:-:L1HS:REF
  • ↕ chr18:72966526-72972556:-:L1HS:REF
  • ↕ chr18:75846851-75852883:+:L1HS:REF
  • ↕ chr19:43864494-43867300:-:L1HS:REF
  • ↕ chr20:7116194-7122199:-:L1HS:REF
  • ↕ chr20:11632779-11638837:+:L1HS:REF
  • ↕ chr20:12801017-12807044:-:L1HS:REF
  • ↕ chr21:22253869-22253871:-:L1HS:NONREF
  • ↕ chr22:15214621-15220667:-:L1HS:REF
  • ↕ chr22:28663283-28669315:+:L1HS:REF
  • ↕ chr22:34549683-34555708:-:L1HS:REF
  • ↕ chr22:48985761-48991792:-:L1HS:REF
  • ↕ chrX:11935296-11941314:-:L1HS:REF
  • ↕ chrX:23238516-23244575:+:L1HS:REF
  • ↕ chrX:26314417-26320446:-:L1HS:REF
  • ↕ chrX:50019456-50025505:-:L1HS:REF
  • ↕ chrX:54118685-54124744:-:L1HS:REF
  • ↕ chrX:56695884-56701916:+:L1HS:REF
  • ↕ chrX:64013267-64019286:-:L1HS:REF
  • ↕ chrX:66180696-66186728:-:L1HS:REF
  • ↕ chrX:73106142-73112170:+:L1HS:REF
  • ↕ chrX:73380991-73387013:+:L1HS:REF
  • ↕ chrX:76233354-76239154:+:L1HS:REF
  • ↕ chrX:76322775-76328806:-:L1HS:REF
  • ↕ chrX:80905077-80905430:-:L1HS:REF
  • ↕ chrX:83059584-83065637:-:L1HS:REF
  • ↕ chrX:83542396-83548420:+:L1HS:REF
  • ↕ chrX:83838051-83839860:-:L1HS:REF
  • ↕ chrX:85733685-85734499:+:L1HS:REF
  • ↕ chrX:87821407-87827419:+:L1HS:REF
  • ↕ chrX:92254241-92256469:-:L1HS:REF
  • ↕ chrX:96057824-96063842:-:L1HS:REF
  • ↕ chrX:106469285-106475319:+:L1HS:REF
  • ↕ chrX:112314520-112314522:-:L1HS:NONREF
  • ↕ chrX:119435468-119441493:-:L1HS:REF
  • ↕ chrX:127362223-127368248:+:L1HS:REF
  • ↕ chrX:130517377-130523407:+:L1HS:REF
  • ↕ chrX:142477849-142483853:+:L1HS:REF
  • ↕ chrX:147653734-147659767:+:L1HS:REF
  • ↕ chrX:149178166-149184185:-:L1HS:REF
  • ↕ chrX:151330320-151336351:+:L1HS:REF
  • ↕ chrX:155516016-155522048:-:L1HS:REF