Methylation of L1HS elements found in IMR90 (both full-length and 3'-truncated)
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chr1:34566055-34572105:-:L1HS:REF
chr1 34571900:34572085
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
34571900
34571924
34571934
34571941
34571945
34571950
34571968
34572003
34572034
34572043
34572046
34572052
34572069
34572085
1
2
3
4
5
6
7
read count
chr1:67078891-67084915:-:L1HS:REF
chr1 67084713:67084897
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
67084713
67084737
67084747
67084752
67084754
67084758
67084763
67084781
67084816
67084846
67084855
67084858
67084864
67084881
67084897
5
10
15
20
25
read count
chr1:68736693-68740136:-:L1HS:REF
chr1 68739931:68740116
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
68739931
68739955
68739965
68739970
68739972
68739981
68740034
68740065
68740074
68740077
68740100
68740116
2
4
6
8
10
12
14
read count
chr1:77000000-77005515:-:L1HS:REF
chr1 77005311:77005480
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
77005311
77005335
77005345
77005350
77005352
77005356
77005361
77005414
77005445
77005454
77005457
77005463
77005480
2
4
6
8
10
12
read count
chr1:85748519-85754548:+:L1HS:REF
chr1 85748540:85748725
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
85748540
85748556
85748573
85748582
85748591
85748622
85748657
85748675
85748684
85748686
85748691
85748701
85748725
5
10
15
20
25
30
read count
chr1:85927067-85933100:+:L1HS:REF
chr1 85927084:85927273
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
85927084
85927088
85927104
85927121
85927127
85927130
85927139
85927170
85927205
85927223
85927228
85927232
85927234
85927239
85927273
2
4
6
8
read count
chr1:86679080-86685111:-:L1HS:REF
chr1 86684907:86685092
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
86684907
86684931
86684941
86684946
86684948
86684952
86684957
86684975
86685010
86685041
86685050
86685053
86685059
86685076
86685092
5
10
15
read count
chr1:104770247-104776278:-:L1HS:REF
chr1 104776073:104776276
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
104776073
104776097
104776107
104776112
104776114
104776123
104776125
104776176
104776207
104776216
104776219
104776225
104776242
104776258
104776276
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr1:104843833-104849864:-:L1HS:REF
chr1 104849660:104849845
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
104849660
104849684
104849694
104849699
104849701
104849705
104849710
104849712
104849728
104849763
104849794
104849806
104849812
104849829
104849845
2
4
6
8
10
12
read count
chr1:105315153-105315155:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
read count
chr1:113497220-113500000:+:L1HS:REF
chr1 113497236:113497405
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
113497236
113497253
113497259
113497262
113497271
113497302
113497337
113497355
113497360
113497364
113497366
113497371
113497381
113497405
1
2
3
4
5
6
read count
chr1:118852351-118858380:+:L1HS:REF
chr1 118852371:118852556
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
118852371
118852387
118852404
118852410
118852413
118852422
118852453
118852488
118852506
118852511
118852515
118852517
118852522
118852532
118852556
1
2
3
4
5
6
7
read count
chr1:121532230-121538261:-:L1HS:REF
chr1 121538056:121538241
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
121538056
121538080
121538090
121538097
121538101
121538106
121538124
121538159
121538190
121538199
121538202
121538208
121538225
121538241
1
2
3
4
5
read count
chr1:146717192-146723218:-:L1HS:REF
chr1 146723013:146723198
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
146723013
146723037
146723047
146723052
146723054
146723058
146723063
146723065
146723081
146723116
146723147
146723156
146723159
146723165
146723182
146723198
5
10
15
read count
chr1:165583897-165583899:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr1:166243053-166249084:-:L1HS:REF
chr1 166248880:166249065
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
166248880
166248904
166248914
166248919
166248921
166248925
166248930
166248948
166248983
166249014
166249023
166249026
166249032
166249049
166249065
2
4
6
8
read count
chr1:174590323-174596379:-:L1HS:REF
chr1 174596176:174596359
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
174596176
174596200
174596210
174596215
174596217
174596221
174596242
174596277
174596308
174596317
174596326
174596343
174596359
10
20
30
40
50
read count
chr1:180866811-180872843:-:L1HS:REF
chr1 180872638:180872823
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
180872638
180872662
180872672
180872677
180872679
180872683
180872688
180872706
180872741
180872772
180872781
180872784
180872790
180872807
180872823
10
20
30
read count
chr1:184845616-184851641:+:L1HS:REF
chr1 184845631:184845816
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
184845631
184845647
184845664
184845670
184845673
184845682
184845713
184845748
184845766
184845771
184845775
184845777
184845782
184845792
184845816
10
20
30
read count
chr1:187343764-187349794:-:L1HS:REF
chr1 187349590:187349775
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
187349590
187349614
187349624
187349629
187349631
187349640
187349658
187349693
187349724
187349733
187349736
187349742
187349775
10
20
30
read count
chr1:187597671-187603699:+:L1HS:REF
chr1 187597689:187597874
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
187597689
187597705
187597722
187597728
187597731
187597740
187597771
187597806
187597822
187597824
187597829
187597835
187597840
187597850
187597874
5
10
15
read count
chr1:193717837-193723892:-:L1HS:REF
chr1 193723689:193723874
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
193723689
193723713
193723724
193723728
193723730
193723734
193723739
193723757
193723823
193723832
193723835
193723841
193723858
193723874
10
20
30
40
read count
chr1:196219370-196225402:-:L1HS:REF
chr1 196225197:196225382
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
196225197
196225221
196225231
196225236
196225238
196225242
196225247
196225300
196225331
196225340
196225343
196225349
196225366
196225382
20
40
60
read count
chr1:197707714-197713746:+:L1HS:REF
chr1 197707735:197707920
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
197707735
197707751
197707768
197707774
197707777
197707786
197707817
197707852
197707870
197707875
197707879
197707881
197707886
197707896
197707920
10
20
30
40
50
read count
chr1:197802331-197803141:+:L1HS:REF
chr1 197802351:197802529
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
197802351
197802364
197802390
197802433
197802468
197802486
197802491
197802495
197802497
197802529
10
20
30
40
read count
chr1:209913771-209919823:-:L1HS:REF
chr1 209919652:209919803
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
209919652
209919657
209919659
209919663
209919668
209919686
209919721
209919761
209919764
209919770
209919787
209919803
1.0
1.5
2.0
2.5
3.0
read count
chr1:216485645-216487614:+:L1HS:REF
chr1 216485699:216485821
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
216485699
216485702
216485711
216485742
216485795
216485800
216485804
216485806
216485811
216485821
5
10
15
20
read count
chr1:218009227-218015252:-:L1HS:REF
chr1 218015049:218015234
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
218015049
218015060
218015073
218015083
218015088
218015090
218015099
218015117
218015152
218015183
218015192
218015195
218015201
218015218
218015234
2
4
6
8
10
12
read count
chr1:220245155-220246008:+:L1HS:REF
chr1 220245175:220245360
methylated
unmethylated
unknown
position
proportion
patterns
1
2
220245175
220245191
220245226
220245257
220245292
220245308
220245310
220245319
220245321
220245326
220245336
220245360
20
40
60
80
100
120
read count
chr1:237019467-237025494:-:L1HS:REF
chr1 237025316:237025477
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
237025316
237025326
237025331
237025333
237025337
237025342
237025360
237025395
237025426
237025435
237025438
237025444
237025461
237025477
5
10
15
20
read count
chr1:237075264-237081293:+:L1HS:REF
chr1 237075264:237075444
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
237075264
237075283
237075299
237075316
237075322
237075325
237075334
237075366
237075400
237075418
237075423
237075427
237075429
237075434
237075444
2
4
6
8
10
12
read count
chr1:239623498-239629523:-:L1HS:REF
chr1 239629323:239629508
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
239629323
239629347
239629357
239629362
239629364
239629368
239629373
239629375
239629391
239629426
239629457
239629466
239629469
239629475
239629492
239629508
1
2
3
4
5
6
read count
chr2:11000000-11002136:-:L1HS:REF
chr2 11001931:11002116
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
11001931
11001955
11001965
11001970
11001972
11001976
11001981
11001999
11002034
11002065
11002074
11002083
11002100
11002116
10
20
30
40
read count
chr2:16593725-16599758:-:L1HS:REF
chr2 16599553:16599738
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
16599553
16599577
16599587
16599592
16599594
16599598
16599603
16599621
16599656
16599687
16599696
16599705
16599722
16599738
5
10
15
read count
chr2:35654292-35654294:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr2:36112506-36118537:-:L1HS:REF
chr2 36118332:36118517
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
36118332
36118356
36118366
36118371
36118373
36118377
36118382
36118400
36118435
36118466
36118475
36118478
36118484
36118501
36118517
2
4
6
8
10
12
read count
chr2:71411474-71417501:-:L1HS:REF
chr2 71417298:71417483
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
71417298
71417322
71417332
71417337
71417339
71417343
71417348
71417350
71417366
71417401
71417432
71417441
71417444
71417450
71417467
71417483
2
4
6
8
10
read count
chr2:79702261-79702263:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
read count
chr2:86655238-86661268:-:L1HS:REF
chr2 86661064:86661233
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
86661064
86661088
86661098
86661105
86661114
86661132
86661198
86661207
86661210
86661216
86661233
1
2
3
4
5
6
read count
chr2:102566355-102572385:-:L1HS:REF
chr2 102572181:102572365
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
102572181
102572204
102572214
102572219
102572221
102572225
102572230
102572248
102572283
102572323
102572332
102572349
102572365
2
4
6
8
10
12
read count
chr2:112503812-112509845:-:L1HS:REF
chr2 112509636:112509826
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
112509636
112509660
112509670
112509675
112509677
112509681
112509686
112509704
112509739
112509744
112509775
112509784
112509787
112509793
112509810
112509826
10
20
30
read count
chr2:126178048-126184064:-:L1HS:REF
chr2 126183883:126184044
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
126183883
126183893
126183900
126183904
126183909
126183927
126183962
126183993
126184002
126184005
126184011
126184044
1.0
1.5
2.0
2.5
3.0
read count
chr2:129415687-129417400:-:L1HS:REF
chr2 129417197:129417381
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
129417197
129417221
129417235
129417237
129417241
129417246
129417264
129417299
129417330
129417339
129417342
129417348
129417365
129417381
5
10
15
20
25
read count
chr2:129685897-129687022:-:L1HS:REF
chr2 129686831:129687016
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
129686831
129686855
129686865
129686870
129686872
129686876
129686881
129686899
129686934
129686965
129686974
129686977
129686983
129687000
129687016
5
10
15
read count
chr2:143253223-143253225:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
read count
chr2:143860956-143866987:+:L1HS:REF
chr2 143860977:143861162
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
143860977
143860993
143861010
143861016
143861019
143861028
143861059
143861094
143861112
143861117
143861121
143861123
143861138
143861162
10
20
30
read count
chr2:148188745-148194773:+:L1HS:REF
chr2 148188764:148188949
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
148188764
148188780
148188797
148188803
148188806
148188815
148188846
148188881
148188899
148188904
148188908
148188910
148188915
148188925
148188949
10
20
30
40
read count
chr2:153007766-153013796:-:L1HS:REF
chr2 153013593:153013778
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
153013593
153013617
153013627
153013632
153013634
153013638
153013643
153013661
153013665
153013696
153013736
153013739
153013745
153013762
153013778
1
2
3
4
5
6
read count
chr2:157566353-157572377:+:L1HS:REF
chr2 157566368:157566529
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
157566368
157566384
157566401
157566407
157566410
157566419
157566450
157566466
157566485
157566508
157566512
157566514
157566519
157566529
1
2
3
4
5
read count
chr2:166988454-166994509:+:L1HS:REF
chr2 166988472:166988657
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
166988472
166988488
166988505
166988511
166988514
166988554
166988589
166988607
166988612
166988616
166988618
166988623
166988633
166988657
5
10
15
read count
chr2:169248623-169254656:+:L1HS:REF
chr2 169248643:169248827
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
169248643
169248659
169248676
169248682
169248685
169248694
169248724
169248759
169248777
169248782
169248786
169248788
169248793
169248803
169248827
1
2
3
4
5
read count
chr2:172315270-172321297:+:L1HS:REF
chr2 172315287:172315472
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
172315287
172315303
172315320
172315326
172315329
172315338
172315369
172315404
172315422
172315427
172315431
172315433
172315438
172315448
172315472
5
10
15
20
read count
chr2:175481951-175487994:-:L1HS:REF
chr2 175487792:175487976
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
175487792
175487816
175487826
175487831
175487833
175487837
175487842
175487860
175487895
175487925
175487934
175487937
175487943
175487960
175487976
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr2:177973073-177979090:+:L1HS:REF
chr2 177973094:177973279
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
177973094
177973110
177973127
177973133
177973136
177973145
177973176
177973211
177973229
177973234
177973238
177973240
177973245
177973255
177973279
1
2
3
4
5
read count
chr2:180833661-180839689:-:L1HS:REF
chr2 180839485:180839670
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
180839485
180839509
180839524
180839526
180839530
180839535
180839537
180839553
180839588
180839619
180839628
180839631
180839637
180839654
180839670
20
40
60
read count
chr2:190613973-190613975:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
14
read count
chr2:193170704-193171720:+:L1HS:REF
chr2 193170741:193170910
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
193170741
193170758
193170764
193170767
193170776
193170807
193170858
193170860
193170865
193170869
193170871
193170876
193170886
193170910
2
4
6
8
10
12
14
read count
chr2:193212420-193218448:-:L1HS:REF
chr2 193218243:193218412
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
193218243
193218267
193218277
193218282
193218284
193218288
193218293
193218295
193218311
193218346
193218377
193218386
193218389
193218395
193218412
2
4
6
8
10
read count
chr2:196905587-196911636:+:L1HS:REF
chr2 196905608:196905793
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
196905608
196905624
196905641
196905647
196905650
196905659
196905725
196905741
196905743
196905748
196905752
196905754
196905759
196905769
196905793
10
20
30
40
50
read count
chr2:213567231-213573262:-:L1HS:REF
chr2 213573057:213573243
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
213573057
213573059
213573083
213573100
213573104
213573109
213573111
213573127
213573162
213573192
213573201
213573204
213573210
213573227
213573243
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr2:230337069-230342513:-:L1HS:REF
chr2 230342314:230342499
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
230342314
230342338
230342349
230342353
230342355
230342359
230342364
230342382
230342457
230342460
230342466
230342483
230342499
20
40
60
80
read count
chr2:232149196-232155229:-:L1HS:REF
chr2 232155024:232155193
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
232155024
232155048
232155058
232155063
232155065
232155069
232155092
232155127
232155158
232155167
232155170
232155176
232155193
5
10
15
20
read count
chr3:3963076-3969110:+:L1HS:REF
chr3 3963095:3963280
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
3963095
3963111
3963128
3963134
3963137
3963177
3963212
3963230
3963235
3963239
3963241
3963246
3963256
3963280
2
4
6
8
10
read count
chr3:4916534-4922591:+:L1HS:REF
chr3 4916534:4916740
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
4916534
4916555
4916571
4916588
4916594
4916597
4916606
4916637
4916658
4916672
4916688
4916695
4916699
4916701
4916705
4916716
4916740
1
2
3
4
5
6
7
read count
chr3:6711039-6711041:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr3:11488672-11492490:-:L1HS:REF
chr3 11492291:11492437
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
11492291
11492308
11492318
11492323
11492329
11492353
11492419
11492437
5
10
15
20
25
30
read count
chr3:17858274-17861391:-:L1HS:REF
chr3 17861189:17861374
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
17861189
17861223
17861228
17861230
17861234
17861239
17861241
17861257
17861292
17861323
17861332
17861335
17861341
17861358
17861374
5
10
15
20
25
read count
chr3:18516080-18520244:+:L1HS:REF
chr3 18516101:18516286
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
18516101
18516143
18516183
18516218
18516234
18516247
18516252
18516279
18516286
2
4
6
8
10
read count
chr3:26036528-26042769:-:L1HS:REF
chr3 26042570:26042749
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
26042570
26042579
26042604
26042667
26042698
26042707
26042710
26042749
2
4
6
8
10
12
read count
chr3:26398017-26404045:-:L1HS:REF
chr3 26403844:26404028
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
26403844
26403868
26403883
26403885
26403889
26403894
26403912
26403947
26403986
26403989
26403995
26404028
1
2
3
4
5
read count
chr3:29108111-29112113:-:L1HS:REF
chr3 29111933:29112094
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
29111933
29111943
29111948
29111954
29111959
29111977
29112043
29112052
29112055
29112061
29112078
29112094
10
20
30
40
read count
chr3:35454617-35458296:+:L1HS:REF
chr3 35454630:35454816
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
35454630
35454663
35454669
35454713
35454766
35454775
35454782
35454809
35454816
1
2
3
4
5
read count
chr3:46783105-46789138:-:L1HS:REF
chr3 46788933:46789118
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
46788933
46788957
46788967
46788972
46788974
46788978
46788983
46789001
46789036
46789067
46789076
46789079
46789085
46789102
46789118
1.0
1.5
2.0
2.5
3.0
read count
chr3:54394322-54400323:-:L1HS:REF
chr3 54400121:54400306
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
54400121
54400145
54400155
54400160
54400162
54400166
54400171
54400189
54400224
54400255
54400267
54400273
54400290
54400306
1
2
3
4
5
6
read count
chr3:55754551-55754553:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
read count
chr3:77763677-77769678:-:L1HS:REF
chr3 77769474:77769658
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
77769474
77769497
77769507
77769512
77769514
77769518
77769541
77769576
77769607
77769619
77769625
77769642
77769658
2
4
6
8
10
read count
chr3:82337499-82339442:+:L1HS:REF
chr3 82337499:82337705
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
82337499
82337536
82337559
82337562
82337602
82337637
82337653
82337655
82337660
82337664
82337666
82337671
82337681
82337705
5
10
15
read count
chr3:89460825-89466856:-:L1HS:REF
chr3 89466652:89466836
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
89466652
89466676
89466686
89466691
89466693
89466697
89466702
89466720
89466755
89466785
89466794
89466797
89466803
89466820
89466836
5
10
15
read count
chr3:90169567-90175598:-:L1HS:REF
chr3 90175417:90175578
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
90175417
90175432
90175434
90175438
90175443
90175461
90175496
90175536
90175539
90175545
90175562
90175578
2
4
6
8
10
12
14
read count
chr3:103556537-103562569:-:L1HS:REF
chr3 103562364:103562549
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
103562364
103562398
103562403
103562405
103562409
103562414
103562432
103562467
103562498
103562507
103562510
103562516
103562533
103562549
2
4
6
8
10
read count
chr3:108749400-108755425:+:L1HS:REF
chr3 108749400:108749599
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
108749400
108749414
108749430
108749447
108749453
108749456
108749465
108749496
108749531
108749549
108749554
108749558
108749560
108749565
108749575
108749599
1.0
1.5
2.0
2.5
3.0
read count
chr3:109199872-109205903:+:L1HS:REF
chr3 109199872:109200077
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
109199872
109199893
109199909
109199926
109199932
109199935
109199944
109200009
109200027
109200032
109200036
109200038
109200043
109200053
109200077
2
4
6
8
10
read count
chr3:110888814-110890548:+:L1HS:REF
chr3 110888833:110889017
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
110888833
110888850
110888866
110888872
110888875
110888884
110888914
110888965
110888967
110888972
110888976
110888978
110888983
110888993
110889017
10
20
30
40
read count
chr3:116359999-116366026:+:L1HS:REF
chr3 116360017:116360201
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
116360017
116360033
116360050
116360056
116360059
116360068
116360133
116360151
116360156
116360160
116360162
116360167
116360177
116360201
5
10
15
20
25
read count
chr3:120573021-120579186:+:L1HS:REF
chr3 120573034:120573186
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
120573034
120573050
120573073
120573076
120573085
120573116
120573151
120573153
120573175
120573186
1.0
1.5
2.0
2.5
3.0
read count
chr3:123871878-123871880:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
10
20
30
read count
chr3:132946006-132952034:-:L1HS:REF
chr3 132951831:132952016
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
132951831
132951855
132951865
132951870
132951872
132951876
132951881
132951899
132951934
132951954
132951965
132951974
132951977
132951983
132952000
132952016
2
4
6
8
read count
chr3:136479056-136485103:-:L1HS:REF
chr3 136484898:136485083
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
136484898
136484922
136484932
136484937
136484939
136484943
136484948
136484950
136485001
136485032
136485041
136485044
136485050
136485067
136485083
5
10
15
20
25
read count
chr3:136963693-136969736:-:L1HS:REF
chr3 136969518:136969716
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
136969518
136969542
136969552
136969557
136969559
136969563
136969568
136969586
136969621
136969652
136969661
136969664
136969670
136969687
136969716
10
20
30
40
read count
chr3:139590956-139596035:+:L1HS:REF
chr3 139590976:139591161
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
139590976
139590992
139591015
139591027
139591058
139591093
139591111
139591116
139591120
139591122
139591127
139591137
139591161
5
10
15
20
read count
chr3:151430754-151430756:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
7
read count
chr3:158019676-158025704:+:L1HS:REF
chr3 158019697:158019882
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
158019697
158019713
158019736
158019739
158019748
158019779
158019814
158019832
158019837
158019841
158019843
158019848
158019858
158019882
1
2
3
4
5
6
read count
chr3:159095379-159101394:-:L1HS:REF
chr3 159101190:159101374
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
159101190
159101214
159101224
159101229
159101231
159101235
159101240
159101258
159101293
159101323
159101332
159101335
159101358
159101374
1.0
1.5
2.0
2.5
3.0
read count
chr3:163236941-163242962:+:L1HS:REF
chr3 163236941:163237141
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
163236941
163236956
163236972
163236989
163236995
163236998
163237007
163237038
163237073
163237091
163237096
163237100
163237102
163237107
163237117
163237141
1
2
3
4
5
6
read count
chr3:164291525-164296426:+:L1HS:REF
chr3 164291546:164291731
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
164291546
164291585
164291588
164291679
164291681
164291686
164291688
164291690
164291692
164291697
164291724
164291731
1
2
3
4
5
6
7
read count
chr3:190964647-190965526:-:L1HS:REF
chr3 190965339:190965524
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
190965339
190965346
190965373
190965378
190965384
190965389
190965391
190965407
190965442
190965473
190965482
190965485
190965508
190965524
1
2
3
4
5
6
7
read count
chr4:14755114-14761144:+:L1HS:REF
chr4 14755133:14755318
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
14755133
14755149
14755166
14755172
14755175
14755215
14755250
14755266
14755268
14755279
14755284
14755294
14755318
2
4
6
8
10
12
read count
chr4:15841546-15847572:+:L1HS:REF
chr4 15841546:15841752
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
15841546
15841549
15841567
15841583
15841600
15841606
15841609
15841618
15841649
15841684
15841707
15841711
15841713
15841718
15841728
15841752
1
2
3
4
5
6
7
read count
chr4:16942776-16944630:+:L1HS:REF
chr4 16942795:16942979
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
16942795
16942811
16942828
16942834
16942837
16942846
16942876
16942911
16942929
16942934
16942938
16942940
16942945
16942955
16942979
5
10
15
read count
chr4:19077911-19083929:-:L1HS:REF
chr4 19083726:19083911
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
19083726
19083750
19083760
19083767
19083771
19083776
19083794
19083829
19083860
19083869
19083872
19083878
19083895
19083911
2
4
6
8
10
12
read count
chr4:21159390-21165421:+:L1HS:REF
chr4 21159411:21159595
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
21159411
21159427
21159444
21159450
21159453
21159462
21159492
21159527
21159545
21159550
21159554
21159556
21159561
21159571
21159595
2
4
6
8
10
read count
chr4:23614771-23620793:+:L1HS:REF
chr4 23614792:23614978
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
23614792
23614808
23614825
23614834
23614875
23614910
23614928
23614933
23614937
23614939
23614944
23614954
23614978
2
4
6
8
10
read count
chr4:29893106-29893108:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
read count
chr4:48051954-48057974:-:L1HS:REF
chr4 48057781:48057966
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
48057781
48057815
48057820
48057822
48057826
48057833
48057849
48057884
48057915
48057924
48057927
48057933
48057950
48057966
2
4
6
8
10
12
read count
chr4:52538471-52544498:+:L1HS:REF
chr4 52538490:52538675
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
52538490
52538506
52538523
52538529
52538532
52538541
52538607
52538630
52538634
52538636
52538641
52538651
52538675
5
10
15
20
25
30
read count
chr4:52816456-52822486:+:L1HS:REF
chr4 52816477:52816662
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
52816477
52816493
52816510
52816516
52816519
52816528
52816559
52816594
52816612
52816617
52816621
52816623
52816628
52816638
52816662
5
10
15
read count
chr4:57562316-57568347:-:L1HS:REF
chr4 57568142:57568327
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
57568142
57568166
57568176
57568181
57568183
57568187
57568192
57568210
57568245
57568285
57568288
57568294
57568311
57568327
2
4
6
8
read count
chr4:59078847-59084877:+:L1HS:REF
chr4 59078865:59079050
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
59078865
59078881
59078898
59078904
59078907
59078916
59078947
59078982
59079000
59079005
59079009
59079011
59079016
59079026
59079050
2
4
6
8
10
12
read count
chr4:61939927-61945962:-:L1HS:REF
chr4 61945757:61945942
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
61945757
61945781
61945791
61945796
61945798
61945802
61945807
61945825
61945860
61945891
61945900
61945903
61945909
61945942
5
10
15
20
25
read count
chr4:62726948-62732969:-:L1HS:REF
chr4 62732765:62732950
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
62732765
62732789
62732799
62732804
62732806
62732810
62732815
62732833
62732868
62732899
62732908
62732911
62732917
62732950
1
2
3
4
5
6
7
read count
chr4:68707017-68707019:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
read count
chr4:69664009-69667565:+:L1HS:REF
chr4 69664029:69664207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
69664029
69664045
69664062
69664068
69664080
69664111
69664162
69664164
69664173
69664175
69664207
2
4
6
8
10
12
read count
chr4:70015396-70019676:-:L1HS:REF
chr4 70019471:70019640
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
70019471
70019495
70019505
70019521
70019574
70019605
70019617
70019623
70019640
1
2
3
4
5
6
7
read count
chr4:74717539-74723587:-:L1HS:REF
chr4 74723382:74723567
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
74723382
74723406
74723416
74723423
74723427
74723432
74723450
74723485
74723516
74723525
74723528
74723534
74723551
74723567
5
10
15
20
read count
chr4:78105735-78111765:+:L1HS:REF
chr4 78105755:78105940
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
78105755
78105771
78105788
78105794
78105797
78105806
78105837
78105872
78105888
78105890
78105895
78105899
78105901
78105906
78105940
2
4
6
8
10
read count
chr4:79704552-79710581:+:L1HS:REF
chr4 79704570:79704755
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
79704570
79704586
79704603
79704609
79704612
79704621
79704652
79704687
79704703
79704705
79704710
79704714
79704716
79704721
79704731
79704755
5
10
15
read count
chr4:79937715-79943746:+:L1HS:REF
chr4 79937734:79937918
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
79937734
79937750
79937767
79937773
79937776
79937785
79937815
79937850
79937868
79937873
79937879
79937884
79937894
79937918
10
20
30
40
read count
chr4:87347103-87353146:-:L1HS:REF
chr4 87352942:87353126
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
87352942
87352966
87352976
87352981
87352983
87352987
87352992
87353010
87353045
87353075
87353084
87353087
87353093
87353110
87353126
10
20
30
40
read count
chr4:91437491-91443691:+:L1HS:REF
chr4 91437510:91437696
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
91437510
91437526
91437543
91437549
91437561
91437627
91437646
91437655
91437662
91437672
91437696
1
2
3
4
5
6
7
read count
chr4:91978211-91984413:+:L1HS:REF
chr4 91978211:91978393
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
91978211
91978232
91978248
91978265
91978271
91978283
91978349
91978367
91978372
91978376
91978378
91978383
91978393
5
10
15
20
read count
chr4:93608283-93614338:-:L1HS:REF
chr4 93614133:93614318
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
93614133
93614157
93614172
93614174
93614178
93614183
93614201
93614267
93614276
93614279
93614285
93614302
93614318
5
10
15
20
read count
chr4:93638307-93644337:-:L1HS:REF
chr4 93644134:93644318
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
93644134
93644158
93644168
93644173
93644175
93644179
93644184
93644202
93644237
93644267
93644276
93644279
93644285
93644302
93644318
1
2
3
4
5
6
7
read count
chr4:98592435-98598463:-:L1HS:REF
chr4 98598258:98598443
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
98598258
98598282
98598292
98598297
98598299
98598303
98598308
98598326
98598361
98598392
98598401
98598404
98598410
98598427
98598443
10
20
30
read count
chr4:106571057-106577070:-:L1HS:REF
chr4 106576868:106577053
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
106576868
106576892
106576902
106576907
106576909
106576913
106576918
106576936
106577002
106577011
106577014
106577020
106577037
106577053
5
10
15
read count
chr4:110690112-110693684:-:L1HS:REF
chr4 110693489:110693667
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
110693489
110693506
110693521
110693527
110693532
110693534
110693585
110693625
110693628
110693667
2
4
6
8
10
read count
chr4:111894801-111900831:+:L1HS:REF
chr4 111894820:111895005
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
111894820
111894836
111894853
111894859
111894862
111894902
111894937
111894953
111894960
111894966
111894971
111894981
111895005
2
4
6
8
10
read count
chr4:119948726-119954758:-:L1HS:REF
chr4 119954577:119954738
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
119954577
119954592
119954594
119954598
119954603
119954621
119954656
119954687
119954696
119954699
119954705
119954722
119954738
20
40
60
80
100
read count
chr4:135178140-135183747:-:L1HS:REF
chr4 135183555:135183733
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
135183555
135183587
135183589
135183593
135183598
135183612
135183616
135183651
135183682
135183694
135183700
135183717
135183733
5
10
15
20
read count
chr4:136293494-136299546:-:L1HS:REF
chr4 136299344:136299528
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
136299344
136299368
136299378
136299383
136299385
136299389
136299394
136299412
136299447
136299477
136299486
136299489
136299495
136299512
136299528
2
4
6
8
10
read count
chr4:137496278-137500000:+:L1HS:REF
chr4 137496287:137496472
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
137496287
137496303
137496320
137496326
137496329
137496338
137496369
137496404
137496420
137496422
137496426
137496433
137496438
137496448
137496472
10
20
30
40
read count
chr4:144809658-144810951:+:L1HS:REF
chr4 144809679:144809864
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
144809679
144809712
144809718
144809730
144809761
144809796
144809812
144809814
144809819
144809823
144809825
144809830
144809840
144809864
2
4
6
8
read count
chr4:146304143-146304145:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
5
10
15
20
25
30
read count
chr4:166449405-166449678:-:L1HS:REF
chr4 166449477:166449662
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
166449477
166449501
166449511
166449516
166449518
166449522
166449527
166449545
166449580
166449611
166449620
166449623
166449646
166449662
1
2
3
4
5
read count
chr4:166569976-166576007:+:L1HS:REF
chr4 166569997:166570181
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
166569997
166570013
166570030
166570036
166570039
166570078
166570113
166570131
166570136
166570140
166570142
166570147
166570157
166570181
2
4
6
8
10
12
read count
chr4:166850455-166851634:+:L1HS:REF
chr4 166850455:166850659
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
166850455
166850474
166850507
166850516
166850556
166850587
166850607
166850614
166850618
166850620
166850635
166850652
166850659
1.0
1.5
2.0
2.5
3.0
read count
chr4:168491946-168491948:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
10
20
30
read count
chr4:169515501-169521532:-:L1HS:REF
chr4 169521328:169521512
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
169521328
169521351
169521361
169521366
169521368
169521372
169521377
169521395
169521430
169521461
169521470
169521473
169521479
169521496
169521512
20
40
60
80
read count
chr4:189137085-189143104:+:L1HS:REF
chr4 189137100:189137285
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
189137100
189137116
189137133
189137139
189137142
189137151
189137182
189137217
189137233
189137235
189137240
189137244
189137246
189137251
189137261
189137285
10
20
30
40
read count
chr5:4500001-4502372:-:L1HS:REF
chr5 4502167:4502352
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
4502167
4502191
4502201
4502212
4502217
4502219
4502235
4502270
4502301
4502310
4502336
4502352
1
2
3
4
5
read count
chr5:15906515-15912550:-:L1HS:REF
chr5 15912346:15912515
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
15912346
15912370
15912380
15912385
15912387
15912391
15912396
15912414
15912449
15912480
15912489
15912492
15912498
15912515
10
20
30
40
read count
chr5:34147845-34154031:+:L1HS:REF
chr5 34147845:34148048
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
34147845
34147864
34147880
34147897
34147903
34147906
34147915
34147945
34147980
34147998
34148007
34148009
34148014
34148048
5
10
15
20
read count
chr5:52086499-52088220:-:L1HS:REF
chr5 52088022:52088209
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
52088022
52088039
52088054
52088056
52088065
52088083
52088149
52088209
2
4
6
8
10
12
14
read count
chr5:66750283-66754219:+:L1HS:REF
chr5 66750304:66750488
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
66750304
66750337
66750343
66750346
66750355
66750385
66750420
66750436
66750443
66750449
66750454
66750464
66750488
2
4
6
8
read count
chr5:79778884-79784938:-:L1HS:REF
chr5 79784739:79784924
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
79784739
79784763
79784773
79784778
79784784
79784789
79784791
79784807
79784842
79784873
79784882
79784885
79784891
79784908
79784924
1
2
3
4
5
6
7
read count
chr5:81616090-81622140:+:L1HS:REF
chr5 81616109:81616294
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
81616109
81616125
81616142
81616148
81616151
81616160
81616191
81616226
81616244
81616249
81616253
81616255
81616260
81616270
81616294
10
20
30
40
read count
chr5:86510690-86516743:+:L1HS:REF
chr5 86510711:86510896
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
86510711
86510744
86510750
86510753
86510762
86510793
86510828
86510846
86510851
86510855
86510857
86510862
86510872
86510896
1
2
3
4
5
read count
chr5:90154963-90154965:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
read count
chr5:102131356-102137385:+:L1HS:REF
chr5 102131377:102131562
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
102131377
102131393
102131410
102131416
102131419
102131459
102131494
102131512
102131517
102131521
102131523
102131528
102131538
102131562
2
4
6
8
read count
chr5:102189483-102194435:+:L1HS:REF
chr5 102189502:102189687
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
102189502
102189518
102189535
102189541
102189544
102189553
102189584
102189619
102189637
102189642
102189646
102189648
102189653
102189663
102189687
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr5:105513236-105519274:-:L1HS:REF
chr5 105519069:105519254
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
105519069
105519093
105519103
105519108
105519114
105519119
105519137
105519172
105519203
105519212
105519215
105519221
105519238
105519254
2
4
6
8
10
12
14
read count
chr5:109259387-109265418:+:L1HS:REF
chr5 109259408:109259592
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
109259408
109259424
109259441
109259447
109259450
109259459
109259489
109259524
109259542
109259547
109259551
109259553
109259558
109259568
109259592
5
10
15
read count
chr5:111302238-111308262:+:L1HS:REF
chr5 111302252:111302437
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
111302252
111302268
111302285
111302291
111302294
111302303
111302334
111302369
111302387
111302392
111302396
111302403
111302413
111302437
5
10
15
20
25
30
read count
chr5:116113364-116113366:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
5
10
15
read count
chr5:119684785-119690814:-:L1HS:REF
chr5 119690612:119690797
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
119690612
119690636
119690646
119690651
119690653
119690657
119690664
119690680
119690715
119690755
119690781
119690797
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr5:133583288-133589299:+:L1HS:REF
chr5 133583306:133583489
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
133583306
133583322
133583339
133583345
133583348
133583357
133583388
133583423
133583439
133583444
133583448
133583450
133583455
133583465
133583489
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr5:146609485-146615534:+:L1HS:REF
chr5 146609500:146609685
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
146609500
146609516
146609533
146609539
146609542
146609551
146609582
146609617
146609635
146609640
146609644
146609646
146609651
146609661
146609685
1
2
3
4
5
6
read count
chr5:152886441-152892473:-:L1HS:REF
chr5 152892268:152892453
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
152892268
152892292
152892302
152892307
152892309
152892336
152892371
152892402
152892411
152892414
152892420
152892437
152892453
1
2
3
4
5
6
read count
chr5:153070982-153077008:-:L1HS:REF
chr5 153076809:153076994
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
153076809
153076833
153076843
153076848
153076850
153076854
153076877
153076912
153076943
153076952
153076955
153076961
153076978
153076994
1.0
1.5
2.0
2.5
3.0
read count
chr5:156061919-156067966:-:L1HS:REF
chr5 156067762:156067946
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
156067762
156067786
156067796
156067801
156067803
156067807
156067812
156067830
156067865
156067895
156067904
156067907
156067913
156067930
156067946
10
20
30
40
50
read count
chr5:160709608-160715639:-:L1HS:REF
chr5 160715436:160715621
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
160715436
160715460
160715470
160715475
160715477
160715481
160715486
160715504
160715539
160715570
160715579
160715582
160715588
160715605
160715621
2
4
6
8
10
read count
chr5:162530742-162531677:-:L1HS:REF
chr5 162531476:162531644
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
162531476
162531500
162531517
162531579
162531600
162531609
162531621
162531644
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr5:166141191-166145692:-:L1HS:REF
chr5 166145506:166145691
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
166145506
166145540
166145545
166145547
166145552
166145556
166145558
166145574
166145609
166145640
166145649
166145652
166145658
166145675
166145691
1.0
1.5
2.0
2.5
3.0
read count
chr5:166966760-166972815:-:L1HS:REF
chr5 166972613:166972798
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
166972613
166972637
166972647
166972652
166972654
166972658
166972663
166972681
166972716
166972756
166972759
166972765
166972782
166972798
2
4
6
8
read count
chr5:173402796-173408828:-:L1HS:REF
chr5 173408623:173408808
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
173408623
173408647
173408657
173408662
173408664
173408668
173408673
173408691
173408726
173408757
173408766
173408769
173408775
173408792
173408808
5
10
15
20
25
read count
chr5:177772245-177778274:+:L1HS:REF
chr5 177772266:177772451
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
177772266
177772282
177772299
177772305
177772308
177772317
177772348
177772383
177772401
177772406
177772410
177772412
177772417
177772427
177772451
2
4
6
8
10
read count
chr6:2417774-2423803:-:L1HS:REF
chr6 2423598:2423783
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
2423598
2423622
2423632
2423637
2423639
2423643
2423648
2423666
2423701
2423732
2423741
2423744
2423750
2423767
2423783
10
20
30
40
read count
chr6:19764892-19770918:+:L1HS:REF
chr6 19764907:19765092
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
19764907
19764923
19764940
19764946
19764949
19764958
19764989
19765024
19765042
19765047
19765051
19765058
19765068
19765092
2
4
6
8
10
read count
chr6:69495362-69500000:+:L1HS:REF
chr6 69495422:69495534
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
69495422
69495425
69495465
69495516
69495523
69495534
5
10
15
read count
chr6:70010347-70016552:+:L1HS:REF
chr6 70010347:70010552
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
70010347
70010368
70010384
70010401
70010407
70010410
70010419
70010449
70010484
70010502
70010507
70010511
70010513
70010517
70010528
70010552
2
4
6
8
read count
chr6:72988654-72994686:-:L1HS:REF
chr6 72994481:72994666
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
72994481
72994505
72994520
72994522
72994526
72994531
72994549
72994584
72994615
72994624
72994627
72994633
72994650
72994666
10
20
30
40
50
read count
chr6:76875759-76877075:-:L1HS:REF
chr6 76876870:76877039
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
76876870
76876894
76876904
76876911
76876915
76876920
76876938
76876973
76877004
76877013
76877022
76877039
2
4
6
8
read count
chr6:83333952-83339981:+:L1HS:REF
chr6 83333973:83334158
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
83333973
83334006
83334012
83334015
83334024
83334055
83334090
83334106
83334113
83334117
83334119
83334124
83334134
83334158
10
20
30
40
50
read count
chr6:93865738-93871783:-:L1HS:REF
chr6 93871578:93871763
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
93871578
93871602
93871612
93871617
93871619
93871646
93871681
93871712
93871721
93871724
93871730
93871747
93871763
1
2
3
4
5
6
7
read count
chr6:94197995-94204060:-:L1HS:REF
chr6 94203855:94204040
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
94203855
94203879
94203889
94203894
94203896
94203900
94203905
94203923
94203958
94203989
94203998
94204001
94204007
94204024
94204040
5
10
15
20
25
read count
chr6:98703059-98708329:+:L1HS:REF
chr6 98703077:98703262
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
98703077
98703093
98703110
98703116
98703119
98703128
98703130
98703159
98703194
98703210
98703217
98703221
98703223
98703228
98703238
98703262
2
4
6
8
10
read count
chr6:112703745-112709778:+:L1HS:REF
chr6 112703766:112703951
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
112703766
112703782
112703799
112703805
112703808
112703848
112703883
112703901
112703906
112703910
112703912
112703917
112703927
112703951
5
10
15
20
25
read count
chr6:121162716-121168725:+:L1HS:REF
chr6 121162730:121162915
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
121162730
121162763
121162769
121162772
121162812
121162847
121162865
121162870
121162874
121162876
121162881
121162891
121162915
10
20
30
read count
chr6:128998385-129000000:+:L1HS:REF
chr6 128998406:128998590
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
128998406
128998422
128998445
128998448
128998457
128998487
128998522
128998540
128998545
128998549
128998551
128998556
128998566
128998590
2
4
6
8
10
12
14
read count
chr6:142128962-142128964:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
22
38
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
read count
chr6:152712429-152712656:-:L1HS:REF
chr6 152712451:152712636
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
152712451
152712475
152712485
152712490
152712492
152712496
152712501
152712519
152712554
152712585
152712594
152712597
152712620
152712636
10
20
30
40
50
read count
chr6:156034135-156040165:+:L1HS:REF
chr6 156034156:156034340
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
156034156
156034172
156034189
156034195
156034198
156034207
156034237
156034272
156034290
156034295
156034299
156034306
156034340
1
2
3
4
5
read count
chr6:156324980-156331010:-:L1HS:REF
chr6 156330805:156330990
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
156330805
156330829
156330839
156330844
156330846
156330850
156330855
156330873
156330908
156330939
156330951
156330957
156330974
156330990
1
2
3
4
5
6
7
read count
chr6:157547703-157547705:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
5
10
15
20
read count
chr7:7465092-7471120:+:L1HS:REF
chr7 7465092:7465297
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
7465092
7465113
7465129
7465146
7465152
7465155
7465164
7465195
7465230
7465233
7465248
7465253
7465257
7465259
7465264
7465274
7465297
2
4
6
8
10
12
read count
chr7:8351723-8353975:+:L1HS:REF
chr7 8351743:8351929
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
8351743
8351783
8351786
8351795
8351826
8351861
8351879
8351890
8351903
8351905
8351922
8351929
1
2
3
4
5
6
read count
chr7:8847084-8847086:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr7:12497211-12500000:+:L1HS:REF
chr7 12497232:12497417
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
12497232
12497248
12497271
12497274
12497283
12497314
12497365
12497372
12497376
12497378
12497393
12497410
12497417
10
20
30
40
read count
chr7:25041860-25047891:-:L1HS:REF
chr7 25047686:25047871
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
25047686
25047710
25047720
25047725
25047727
25047731
25047736
25047754
25047768
25047789
25047820
25047829
25047832
25047855
25047871
5
10
15
20
read count
chr7:30439242-30445274:+:L1HS:REF
chr7 30439263:30439448
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
30439263
30439279
30439296
30439302
30439305
30439314
30439345
30439366
30439380
30439396
30439398
30439403
30439407
30439409
30439414
30439424
30439448
2
4
6
8
10
12
14
read count
chr7:49680245-49686300:-:L1HS:REF
chr7 49686097:49686281
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
49686097
49686121
49686131
49686136
49686138
49686142
49686143
49686147
49686165
49686200
49686230
49686239
49686242
49686248
49686265
49686281
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr7:57539590-57540834:+:L1HS:REF
chr7 57539647:57539790
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
57539647
57539656
57539745
57539749
57539756
57539783
57539790
2
4
6
8
10
12
14
read count
chr7:63148831-63154859:-:L1HS:REF
chr7 63154654:63154839
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
63154654
63154678
63154688
63154693
63154695
63154699
63154704
63154706
63154722
63154757
63154788
63154797
63154800
63154806
63154823
63154839
1
2
3
4
5
read count
chr7:66286853-66292884:-:L1HS:REF
chr7 66292679:66292864
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
66292679
66292703
66292713
66292718
66292720
66292724
66292729
66292747
66292782
66292813
66292822
66292825
66292831
66292848
66292864
5
10
15
20
read count
chr7:70197328-70203357:+:L1HS:REF
chr7 70197349:70197534
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
70197349
70197365
70197382
70197388
70197391
70197400
70197431
70197466
70197484
70197489
70197493
70197495
70197500
70197510
70197534
2
4
6
8
10
12
read count
chr7:93787624-93793679:-:L1HS:REF
chr7 93793474:93793659
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
93793474
93793498
93793508
93793513
93793519
93793524
93793542
93793577
93793608
93793617
93793620
93793626
93793643
93793659
5
10
15
read count
chr7:96846650-96852680:-:L1HS:REF
chr7 96852477:96852661
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
96852477
96852501
96852511
96852516
96852518
96852522
96852527
96852545
96852580
96852610
96852619
96852622
96852628
96852645
96852661
1.0
1.5
2.0
2.5
3.0
read count
chr7:97613656-97619688:+:L1HS:REF
chr7 97613677:97613862
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
97613677
97613692
97613710
97613716
97613719
97613728
97613759
97613794
97613812
97613817
97613821
97613823
97613828
97613862
1
2
3
4
5
read count
chr7:110707004-110713024:-:L1HS:REF
chr7 110712831:110713016
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
110712831
110712865
110712870
110712872
110712881
110712899
110712934
110712965
110712974
110712983
110713000
110713016
5
10
15
20
25
read count
chr7:111243515-111249546:-:L1HS:REF
chr7 111249342:111249526
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
111249342
111249366
111249376
111249381
111249383
111249387
111249392
111249410
111249445
111249475
111249484
111249487
111249493
111249510
111249526
10
20
30
40
50
read count
chr7:111963193-111969223:+:L1HS:REF
chr7 111963214:111963399
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
111963214
111963230
111963247
111963253
111963256
111963296
111963331
111963349
111963354
111963358
111963360
111963375
111963399
5
10
15
read count
chr7:113776122-113782152:-:L1HS:REF
chr7 113781948:113782132
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
113781948
113781972
113781982
113781987
113781989
113781993
113781998
113782016
113782051
113782081
113782090
113782093
113782099
113782116
113782132
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr7:125179570-125181978:-:L1HS:REF
chr7 125181774:125181959
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
125181774
125181798
125181808
125181813
125181815
125181819
125181842
125181877
125181908
125181920
125181926
125181943
125181959
1
2
3
4
5
6
read count
chr7:131182660-131182662:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
14
read count
chr7:141062014-141068042:-:L1HS:REF
chr7 141067837:141068022
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
141067837
141067861
141067871
141067878
141067882
141067887
141067889
141067905
141067940
141067971
141067980
141067983
141067989
141068022
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr7:141920659-141926712:-:L1HS:REF
chr7 141926508:141926692
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
141926508
141926532
141926542
141926547
141926549
141926553
141926558
141926576
141926611
141926641
141926650
141926653
141926659
141926676
141926692
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr7:143121573-143121575:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
read count
chr7:147842591-147848623:-:L1HS:REF
chr7 147848418:147848603
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
147848418
147848442
147848452
147848457
147848463
147848468
147848486
147848521
147848552
147848561
147848570
147848587
147848603
2
4
6
8
read count
chr7:150597094-150602628:+:L1HS:REF
chr7 150597154:150597197
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
150597154
150597166
150597197
1
2
3
4
5
6
7
read count
chr8:8470859-8476906:+:L1HS:REF
chr8 8470880:8471065
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
8470880
8470896
8470913
8470919
8470922
8470931
8470962
8471013
8471015
8471020
8471024
8471026
8471031
8471041
8471065
2
4
6
8
read count
chr8:27113618-27119645:+:L1HS:REF
chr8 27113635:27113820
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
27113635
27113651
27113668
27113674
27113677
27113686
27113717
27113752
27113770
27113775
27113779
27113781
27113786
27113796
27113820
2
4
6
8
read count
chr8:40575655-40575657:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
14
read count
chr8:71486984-71486986:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
7
read count
chr8:75621331-75627355:-:L1HS:REF
chr8 75627151:75627336
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
75627151
75627185
75627190
75627192
75627196
75627219
75627238
75627254
75627285
75627294
75627297
75627320
75627336
2
4
6
8
10
read count
chr8:88685705-88691760:+:L1HS:REF
chr8 88685705:88685911
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
88685705
88685742
88685759
88685765
88685768
88685777
88685808
88685843
88685861
88685870
88685872
88685877
88685887
88685911
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr8:104739851-104745873:-:L1HS:REF
chr8 104745668:104745853
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
104745668
104745692
104745707
104745713
104745718
104745736
104745771
104745802
104745811
104745814
104745820
104745830
104745837
104745853
10
20
30
read count
chr8:104959062-104964830:-:L1HS:REF
chr8 104964642:104964821
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
104964642
104964659
104964669
104964676
104964680
104964766
104964782
104964821
5
10
15
20
read count
chr8:121329878-121334807:-:L1HS:REF
chr8 121334614:121334799
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
121334614
121334621
121334638
121334648
121334664
121334666
121334682
121334717
121334748
121334757
121334760
121334766
121334783
121334799
10
20
30
40
50
60
read count
chr8:127311575-127315431:+:L1HS:REF
chr8 127311575:127311739
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
127311575
127311611
127311628
127311634
127311637
127311639
127311668
127311677
127311730
127311735
127311739
5
10
15
20
25
read count
chr8:135875862-135881890:+:L1HS:REF
chr8 135875883:135876068
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
135875883
135875899
135875922
135875925
135875934
135875965
135876000
135876018
135876023
135876027
135876029
135876034
135876044
135876068
1
2
3
4
5
read count
chr8:136438074-136444105:-:L1HS:REF
chr8 136443900:136444085
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
136443900
136443924
136443934
136443939
136443941
136443945
136443950
136443968
136444034
136444043
136444046
136444052
136444069
136444085
1
2
3
4
5
6
7
read count
chr9:20655632-20658802:-:L1HS:REF
chr9 20658600:20658784
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
20658600
20658624
20658634
20658639
20658641
20658645
20658668
20658703
20658733
20658745
20658751
20658768
20658784
5
10
15
read count
chr9:28111895-28117865:-:L1HS:REF
chr9 28117732:28117835
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
28117732
28117766
28117771
28117773
28117777
28117782
28117800
28117835
2
4
6
8
10
read count
chr9:63913382-63916426:+:L1HS:REF
chr9 63913400:63913578
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
63913400
63913439
63913442
63913517
63913544
63913578
1
2
3
4
5
read count
chr9:83049539-83055571:-:L1HS:REF
chr9 83055366:83055551
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
83055366
83055390
83055400
83055405
83055407
83055411
83055416
83055418
83055434
83055446
83055453
83055469
83055500
83055509
83055512
83055518
83055535
83055551
5
10
15
20
read count
chr9:90149604-90155634:+:L1HS:REF
chr9 90149624:90149809
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
90149624
90149640
90149657
90149663
90149666
90149675
90149706
90149741
90149759
90149764
90149770
90149775
90149785
90149809
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr9:94113535-94119565:-:L1HS:REF
chr9 94119361:94119546
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
94119361
94119385
94119395
94119400
94119402
94119406
94119411
94119429
94119464
94119495
94119504
94119507
94119513
94119530
94119546
10
20
30
read count
chr9:95697585-95703604:+:L1HS:REF
chr9 95697600:95697785
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
95697600
95697616
95697633
95697639
95697642
95697651
95697682
95697717
95697735
95697740
95697746
95697751
95697761
95697785
5
10
15
read count
chr9:99498741-99500000:+:L1HS:REF
chr9 99498761:99498946
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
99498761
99498794
99498800
99498803
99498812
99498843
99498878
99498894
99498896
99498901
99498905
99498907
99498912
99498922
99498946
1
2
3
4
5
read count
chr9:103237485-103241471:+:L1HS:REF
chr9 103237538:103237690
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
103237538
103237547
103237556
103237638
103237649
103237651
103237656
103237684
103237688
103237690
2
4
6
8
10
12
read count
chr9:108802688-108802690:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
read count
chr9:110417102-110423126:+:L1HS:REF
chr9 110417123:110417308
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
110417123
110417139
110417156
110417162
110417165
110417174
110417205
110417233
110417240
110417258
110417263
110417267
110417269
110417274
110417284
110417308
2
4
6
8
10
read count
chr9:110791097-110797129:+:L1HS:REF
chr9 110791118:110791303
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
110791118
110791134
110791151
110791157
110791160
110791169
110791200
110791235
110791253
110791258
110791262
110791264
110791269
110791279
110791303
10
20
30
40
50
60
read count
chr9:112798107-112804159:-:L1HS:REF
chr9 112803958:112804142
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
112803958
112803982
112803992
112803997
112803999
112804003
112804008
112804026
112804061
112804091
112804100
112804103
112804109
112804126
112804142
5
10
15
20
read count
chr10:5245354-5251383:+:L1HS:REF
chr10 5245374:5245559
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
5245374
5245390
5245407
5245413
5245416
5245425
5245456
5245491
5245509
5245514
5245518
5245520
5245525
5245535
5245559
1
2
3
4
5
6
7
read count
chr10:19088601-19094618:-:L1HS:REF
chr10 19094413:19094582
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
19094413
19094437
19094447
19094452
19094454
19094458
19094481
19094516
19094547
19094556
19094559
19094565
19094582
10
20
30
40
read count
chr10:25418756-25418758:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
read count
chr10:33510845-33516876:-:L1HS:REF
chr10 33516672:33516857
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
33516672
33516696
33516706
33516711
33516713
33516717
33516722
33516740
33516775
33516806
33516815
33516818
33516824
33516841
33516857
5
10
15
20
25
read count
chr10:37995443-38000000:+:L1HS:REF
chr10 37995478:37995634
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
37995478
37995495
37995501
37995504
37995513
37995544
37995579
37995595
37995600
37995634
2
4
6
8
10
12
read count
chr10:81441665-81441975:-:L1HS:REF
chr10 81441782:81441967
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
81441782
81441806
81441816
81441827
81441832
81441834
81441850
81441861
81441885
81441916
81441928
81441934
81441967
5
10
15
20
read count
chr10:85355506-85361538:+:L1HS:REF
chr10 85355527:85355712
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
85355527
85355543
85355560
85355566
85355569
85355578
85355609
85355644
85355662
85355667
85355671
85355678
85355688
85355712
2
4
6
8
10
read count
chr10:98782941-98788971:-:L1HS:REF
chr10 98788766:98788951
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
98788766
98788790
98788800
98788805
98788811
98788816
98788869
98788900
98788909
98788912
98788918
98788935
98788951
10
20
30
40
read count
chr10:105377346-105383377:-:L1HS:REF
chr10 105383173:105383357
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
105383173
105383197
105383207
105383212
105383214
105383218
105383223
105383241
105383306
105383315
105383318
105383324
105383341
105383357
1
2
3
4
5
6
7
read count
chr10:105775520-105781551:-:L1HS:REF
chr10 105781346:105781531
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
105781346
105781370
105781380
105781387
105781391
105781414
105781449
105781480
105781489
105781492
105781498
105781515
105781531
2
4
6
8
10
12
read count
chr10:108310130-108316139:-:L1HS:REF
chr10 108315955:108316124
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
108315955
108315979
108315989
108315994
108315996
108316000
108316007
108316023
108316058
108316098
108316101
108316107
108316124
5
10
15
20
25
read count
chr10:120902678-120902680:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
5
10
15
20
25
read count
chr10:122695714-122695716:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr11:5914493-5918448:+:L1HS:REF
chr11 5914502:5914688
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
5914502
5914535
5914584
5914638
5914643
5914647
5914688
1
2
3
4
5
read count
chr11:24327951-24334001:+:L1HS:REF
chr11 24327971:24328155
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
24327971
24327987
24328004
24328010
24328013
24328022
24328052
24328087
24328105
24328110
24328114
24328116
24328121
24328131
24328155
10
20
30
40
read count
chr11:25500009-25502139:-:L1HS:REF
chr11 25501955:25502103
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
25501955
25501958
25501968
25501973
25501975
25501979
25501986
25502002
25502037
25502068
25502086
25502103
1.0
1.5
2.0
2.5
3.0
read count
chr11:31315654-31321680:-:L1HS:REF
chr11 31321476:31321661
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
31321476
31321500
31321510
31321515
31321517
31321521
31321544
31321579
31321610
31321619
31321622
31321628
31321645
31321661
5
10
15
read count
chr11:36551606-36557636:-:L1HS:REF
chr11 36557432:36557617
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
36557432
36557456
36557466
36557471
36557473
36557477
36557482
36557484
36557500
36557535
36557566
36557575
36557578
36557584
36557601
36557617
2
4
6
8
10
12
read count
chr11:48847694-48853724:-:L1HS:REF
chr11 48853519:48853704
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
48853519
48853553
48853558
48853564
48853569
48853622
48853653
48853671
48853688
48853704
2
4
6
8
10
12
read count
chr11:54849946-54851079:+:L1HS:REF
chr11 54849960:54850145
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
54849960
54849993
54849999
54850002
54850042
54850077
54850100
54850104
54850111
54850121
54850145
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr11:78677772-78683802:-:L1HS:REF
chr11 78683599:78683784
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
78683599
78683623
78683633
78683638
78683640
78683644
78683649
78683651
78683667
78683702
78683742
78683745
78683751
78683768
78683784
5
10
15
read count
chr11:82155865-82161891:+:L1HS:REF
chr11 82155865:82156064
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
82155865
82155879
82155895
82155912
82155918
82155921
82155930
82155961
82155996
82156014
82156019
82156023
82156025
82156030
82156040
82156064
2
4
6
8
read count
chr11:85324758-85330821:+:L1HS:REF
chr11 85324779:85324964
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
85324779
85324795
85324812
85324818
85324821
85324830
85324861
85324896
85324914
85324919
85324923
85324925
85324930
85324940
85324964
2
4
6
8
read count
chr11:87340031-87346061:-:L1HS:REF
chr11 87345856:87346041
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
87345856
87345880
87345890
87345895
87345897
87345901
87345906
87345924
87345959
87345990
87345999
87346002
87346008
87346025
87346041
2
4
6
8
10
12
14
read count
chr11:90400067-90406098:-:L1HS:REF
chr11 90405894:90406079
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
90405894
90405918
90405928
90405935
90405939
90405944
90405962
90405997
90406028
90406037
90406040
90406046
90406063
90406079
1
2
3
4
5
6
read count
chr11:90966271-90972302:-:L1HS:REF
chr11 90972097:90972282
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
90972097
90972121
90972131
90972136
90972138
90972142
90972165
90972200
90972231
90972240
90972243
90972249
90972282
1
2
3
4
5
6
read count
chr11:93136638-93142673:+:L1HS:REF
chr11 93136659:93136843
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
93136659
93136675
93136692
93136698
93136701
93136710
93136740
93136775
93136793
93136798
93136802
93136804
93136809
93136819
93136843
5
10
15
20
25
30
read count
chr11:95436216-95442246:+:L1HS:REF
chr11 95436236:95436420
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
95436236
95436252
95436269
95436275
95436278
95436287
95436317
95436352
95436370
95436375
95436379
95436381
95436386
95436396
95436420
5
10
15
read count
chr11:108685166-108685556:-:L1HS:REF
chr11 108685353:108685538
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
108685353
108685377
108685387
108685392
108685394
108685398
108685403
108685421
108685456
108685487
108685496
108685505
108685522
108685538
5
10
15
20
25
30
read count
chr11:109177494-109183526:-:L1HS:REF
chr11 109183321:109183506
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
109183321
109183345
109183355
109183360
109183362
109183371
109183389
109183396
109183424
109183455
109183464
109183467
109183473
109183506
1
2
3
4
5
read count
chr11:125536609-125542640:+:L1HS:REF
chr11 125536628:125536813
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
125536628
125536644
125536661
125536667
125536670
125536679
125536710
125536745
125536761
125536768
125536772
125536779
125536789
125536813
2
4
6
8
10
read count
chr12:3500000-3505228:-:L1HS:REF
chr12 3505023:3505208
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
3505023
3505047
3505057
3505062
3505064
3505068
3505073
3505091
3505126
3505157
3505166
3505175
3505192
3505208
1
2
3
4
5
read count
chr12:28073477-28073479:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
22
38
55
61
64
73
104
139
157
166
168
173
183
207
5
10
15
20
read count
chr12:38799646-38805673:+:L1HS:REF
chr12 38799664:38799849
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
38799664
38799680
38799697
38799703
38799706
38799715
38799746
38799781
38799797
38799799
38799804
38799808
38799810
38799815
38799825
38799849
1
2
3
4
5
read count
chr12:44108220-44114234:-:L1HS:REF
chr12 44114029:44114214
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
44114029
44114053
44114063
44114068
44114070
44114074
44114079
44114097
44114132
44114163
44114172
44114175
44114181
44114198
44114214
10
20
30
40
50
read count
chr12:51562631-51568657:-:L1HS:REF
chr12 51568456:51568637
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
51568456
51568476
51568486
51568491
51568493
51568497
51568502
51568520
51568555
51568586
51568595
51568598
51568604
51568621
51568637
5
10
15
read count
chr12:54788573-54794627:+:L1HS:REF
chr12 54788573:54788776
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
54788573
54788591
54788607
54788624
54788630
54788633
54788642
54788673
54788708
54788726
54788731
54788735
54788737
54788742
54788752
54788776
1.0
1.5
2.0
2.5
3.0
read count
chr12:55096256-55102283:-:L1HS:REF
chr12 55102078:55102263
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
55102078
55102102
55102117
55102119
55102123
55102146
55102181
55102212
55102221
55102224
55102230
55102247
55102263
2
4
6
8
read count
chr12:69773410-69779441:-:L1HS:REF
chr12 69779236:69779421
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
69779236
69779260
69779270
69779275
69779277
69779281
69779286
69779304
69779339
69779370
69779379
69779382
69779388
69779405
69779421
5
10
15
20
25
read count
chr12:73283667-73289668:-:L1HS:REF
chr12 73289487:73289648
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
73289487
73289497
73289502
73289504
73289513
73289531
73289566
73289597
73289606
73289609
73289632
73289648
1
2
3
4
5
read count
chr12:74874868-74880901:+:L1HS:REF
chr12 74874889:74875074
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
74874889
74874922
74874928
74874931
74874940
74874971
74875006
74875024
74875029
74875033
74875035
74875040
74875050
74875074
5
10
15
20
read count
chr12:101146043-101152064:+:L1HS:REF
chr12 101146043:101146249
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
101146043
101146080
101146097
101146103
101146106
101146146
101146181
101146183
101146197
101146208
101146215
101146225
101146249
2
4
6
8
read count
chr12:108996947-109000000:+:L1HS:REF
chr12 108996968:108997153
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
108996968
108996984
108997001
108997007
108997019
108997050
108997085
108997101
108997108
108997112
108997114
108997119
108997129
108997153
2
4
6
8
10
read count
chr12:126299023-126305038:-:L1HS:REF
chr12 126304837:126305021
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
126304837
126304861
126304871
126304876
126304878
126304882
126304887
126304905
126304940
126304970
126304979
126304982
126304988
126305005
126305021
1
2
3
4
5
read count
chr13:19496786-19500000:+:L1HS:REF
chr13 19496786:19496967
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
19496786
19496807
19496823
19496840
19496846
19496849
19496851
19496923
19496939
19496941
19496946
19496950
19496952
19496957
19496967
1
2
3
4
5
read count
chr13:29641706-29647706:-:L1HS:REF
chr13 29647533:29647701
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
29647533
29647557
29647567
29647572
29647574
29647578
29647583
29647601
29647636
29647666
29647675
29647678
29647684
29647701
1
2
3
4
5
6
read count
chr13:31302314-31308370:+:L1HS:REF
chr13 31302314:31302519
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
31302314
31302334
31302350
31302367
31302373
31302376
31302385
31302416
31302451
31302469
31302474
31302478
31302480
31302485
31302495
31302519
5
10
15
read count
chr13:34480262-34486294:-:L1HS:REF
chr13 34486089:34486274
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
34486089
34486113
34486128
34486130
34486134
34486139
34486157
34486192
34486223
34486232
34486235
34486241
34486258
34486274
5
10
15
read count
chr13:48465555-48471566:+:L1HS:REF
chr13 48465565:48465750
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
48465565
48465581
48465598
48465604
48465607
48465616
48465647
48465682
48465700
48465705
48465711
48465716
48465726
48465750
10
20
30
40
read count
chr13:54572234-54573121:+:L1HS:REF
chr13 54572254:54572443
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
54572254
54572270
54572287
54572293
54572296
54572305
54572336
54572371
54572375
54572391
54572402
54572404
54572419
54572443
1.0
1.5
2.0
2.5
3.0
read count
chr13:74426326-74432354:+:L1HS:REF
chr13 74426341:74426526
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
74426341
74426357
74426374
74426380
74426383
74426423
74426458
74426466
74426476
74426481
74426485
74426487
74426492
74426502
74426526
1
2
3
4
5
6
read count
chr13:76612823-76618851:-:L1HS:REF
chr13 76618646:76618831
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
76618646
76618670
76618685
76618687
76618691
76618696
76618714
76618749
76618780
76618789
76618792
76618798
76618814
76618831
5
10
15
20
25
read count
chr13:92685561-92691592:-:L1HS:REF
chr13 92691387:92691572
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
92691387
92691411
92691421
92691426
92691428
92691432
92691437
92691455
92691490
92691521
92691530
92691533
92691539
92691556
92691572
5
10
15
read count
chr13:97667408-97673440:-:L1HS:REF
chr13 97673235:97673420
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
97673235
97673259
97673269
97673274
97673276
97673280
97673285
97673287
97673303
97673338
97673369
97673378
97673381
97673387
97673420
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr13:105382665-105383251:-:L1HS:REF
chr13 105383056:105383234
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
105383056
105383073
105383083
105383088
105383090
105383117
105383152
105383192
105383195
105383201
105383234
5
10
15
read count
chr13:108510472-108516495:-:L1HS:REF
chr13 108516297:108516482
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
108516297
108516321
108516331
108516336
108516338
108516342
108516347
108516349
108516365
108516431
108516440
108516443
108516449
108516466
108516482
2
4
6
8
10
read count
chr14:30681601-30681603:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
14
read count
chr14:30684809-30690837:-:L1HS:REF
chr14 30690632:30690834
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
30690632
30690656
30690666
30690671
30690673
30690677
30690682
30690700
30690714
30690735
30690766
30690775
30690778
30690784
30690801
30690817
30690834
5
10
15
20
read count
chr14:44705080-44711104:-:L1HS:REF
chr14 44710899:44711084
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
44710899
44710933
44710938
44710940
44710944
44710949
44710951
44710967
44711002
44711032
44711042
44711045
44711068
44711084
5
10
15
20
read count
chr14:45477110-45483169:-:L1HS:REF
chr14 45482988:45483149
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
45482988
45482998
45483003
45483009
45483014
45483032
45483067
45483107
45483110
45483116
45483133
45483149
2
4
6
8
read count
chr14:46727484-46727758:-:L1HS:REF
chr14 46727554:46727739
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
46727554
46727578
46727588
46727593
46727595
46727599
46727604
46727622
46727657
46727688
46727697
46727700
46727706
46727723
46727739
2
4
6
8
10
read count
chr14:48187082-48193113:+:L1HS:REF
chr14 48187103:48187288
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
48187103
48187119
48187136
48187142
48187145
48187154
48187185
48187220
48187238
48187243
48187247
48187254
48187264
48187288
2
4
6
8
10
read count
chr14:51794601-51800632:-:L1HS:REF
chr14 51800428:51800613
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
51800428
51800452
51800462
51800467
51800469
51800473
51800478
51800496
51800562
51800571
51800574
51800580
51800597
51800613
10
20
30
40
read count
chr14:61055116-61061148:-:L1HS:REF
chr14 61060943:61061128
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
61060943
61060967
61060977
61060982
61060984
61060988
61060993
61060995
61061011
61061046
61061077
61061086
61061089
61061095
61061112
61061128
10
20
30
40
50
read count
chr14:62535851-62541882:+:L1HS:REF
chr14 62535870:62536055
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
62535870
62535886
62535903
62535909
62535912
62535921
62535952
62535987
62536005
62536010
62536014
62536016
62536021
62536031
62536055
2
4
6
8
10
12
read count
chr14:63116706-63122735:-:L1HS:REF
chr14 63122530:63122715
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
63122530
63122554
63122564
63122569
63122571
63122575
63122580
63122598
63122633
63122664
63122673
63122676
63122682
63122699
63122715
5
10
15
20
25
read count
chr14:66953145-66953147:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
2
4
6
8
10
12
read count
chr14:70547290-70553322:+:L1HS:REF
chr14 70547311:70547496
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
70547311
70547327
70547344
70547350
70547353
70547362
70547393
70547428
70547446
70547451
70547455
70547457
70547462
70547472
70547496
5
10
15
20
read count
chr14:79314060-79314943:+:L1HS:REF
chr14 79314072:79314257
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
79314072
79314088
79314105
79314111
79314114
79314123
79314154
79314189
79314205
79314207
79314212
79314216
79314218
79314223
79314233
79314257
2
4
6
8
10
12
14
read count
chr15:47215130-47215132:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
7
read count
chr15:51417216-51423246:-:L1HS:REF
chr15 51423042:51423227
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
51423042
51423066
51423076
51423081
51423083
51423087
51423092
51423110
51423145
51423176
51423185
51423188
51423194
51423211
51423227
10
20
30
read count
chr15:51551621-51551623:+:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
read count
chr15:54926081-54932099:-:L1HS:REF
chr15 54931895:54932080
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
54931895
54931919
54931929
54931934
54931936
54931940
54931945
54931963
54931998
54932029
54932038
54932041
54932047
54932064
54932080
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr15:82882881-82888919:-:L1HS:REF
chr15 82888716:82888900
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
82888716
82888740
82888755
82888757
82888761
82888766
82888784
82888819
82888849
82888858
82888861
82888867
82888884
82888900
1
2
3
4
5
6
read count
chr15:83450804-83456834:-:L1HS:REF
chr15 83456630:83456815
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
83456630
83456654
83456664
83456669
83456671
83456675
83456680
83456698
83456733
83456764
83456773
83456776
83456782
83456799
83456815
2
4
6
8
10
12
14
read count
chr15:87509891-87515920:+:L1HS:REF
chr15 87509909:87510094
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
87509909
87509925
87509942
87509948
87509951
87509960
87509991
87510026
87510044
87510049
87510053
87510055
87510060
87510070
87510094
2
4
6
8
10
read count
chr16:9584490-9590522:-:L1HS:REF
chr16 9590317:9590502
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
9590317
9590341
9590351
9590356
9590358
9590362
9590367
9590385
9590420
9590451
9590460
9590463
9590469
9590486
9590502
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr16:16840517-16846556:-:L1HS:REF
chr16 16846363:16846548
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
16846363
16846387
16846397
16846402
16846404
16846408
16846413
16846431
16846466
16846497
16846506
16846509
16846515
16846532
16846548
1
2
3
4
5
read count
chr16:32587481-32588397:-:L1HS:REF
chr16 32588216:32588377
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
32588216
32588226
32588242
32588326
32588338
32588344
32588361
32588377
1
2
3
4
5
6
read count
chr16:33952564-33958612:-:L1HS:REF
chr16 33958408:33958592
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
33958408
33958432
33958442
33958447
33958449
33958453
33958458
33958476
33958511
33958541
33958550
33958553
33958559
33958576
33958592
1.0
1.5
2.0
2.5
3.0
read count
chr16:34118474-34119193:+:L1HS:REF
chr16 34118489:34118635
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
34118489
34118540
34118635
2
4
6
8
read count
chr16:54042096-54048145:+:L1HS:REF
chr16 54042114:54042299
methylated
unmethylated
unknown
position
proportion
patterns
1
2
54042114
54042130
54042147
54042156
54042165
54042196
54042231
54042249
54042254
54042258
54042260
54042265
54042275
54042299
10
20
30
40
read count
chr16:65690011-65696020:+:L1HS:REF
chr16 65690019:65690170
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
65690019
65690035
65690052
65690058
65690061
65690070
65690101
65690154
65690159
65690163
65690170
10
20
30
40
read count
chr16:68583448-68589505:-:L1HS:REF
chr16 68589300:68589485
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
68589300
68589324
68589334
68589339
68589341
68589345
68589350
68589368
68589403
68589434
68589443
68589452
68589469
68589485
1
2
3
4
5
6
7
read count
chr16:80727089-80730717:+:L1HS:REF
chr16 80727137:80727289
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
80727137
80727146
80727155
80727186
80727239
80727244
80727250
80727265
80727282
80727289
5
10
15
20
read count
chr16:83637252-83643296:+:L1HS:REF
chr16 83637252:83637470
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
83637252
83637271
83637287
83637304
83637310
83637319
83637328
83637337
83637367
83637402
83637420
83637425
83637429
83637431
83637436
83637446
83637470
2
4
6
8
10
12
14
read count
chr17:9615985-9622015:+:L1HS:REF
chr17 9616006:9616191
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
9616006
9616022
9616039
9616045
9616048
9616057
9616088
9616123
9616139
9616141
9616146
9616150
9616152
9616157
9616167
9616191
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr17:34808392-34808394:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
read count
chr17:66596579-66602595:-:L1HS:REF
chr17 66602390:66602575
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
66602390
66602414
66602424
66602429
66602431
66602435
66602440
66602458
66602493
66602524
66602533
66602536
66602542
66602559
66602575
5
10
15
20
25
30
read count
chr17:69000000-69005148:-:L1HS:REF
chr17 69004943:69005142
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
69004943
69004950
69004967
69004977
69004982
69004993
69004995
69005011
69005046
69005077
69005086
69005089
69005112
69005128
69005142
2
4
6
8
10
read count
chr17:70458956-70464987:+:L1HS:REF
chr17 70458977:70459161
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
70458977
70458993
70459010
70459016
70459019
70459028
70459058
70459093
70459111
70459116
70459120
70459122
70459127
70459137
70459161
2
4
6
8
10
12
14
read count
chr17:70544788-70550795:-:L1HS:REF
chr17 70550645:70550790
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
70550645
70550662
70550672
70550677
70550679
70550683
70550688
70550690
70550706
70550741
70550772
70550781
70550784
70550790
1
2
3
4
5
read count
chr18:535701-541755:+:L1HS:REF
chr18 535721:535905
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
535721
535737
535754
535760
535763
535772
535801
535837
535853
535855
535860
535866
535871
535881
535898
535905
2
4
6
8
10
read count
chr18:4477329-4478177:+:L1HS:REF
chr18 4477348:4477533
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
4477348
4477364
4477381
4477387
4477390
4477399
4477430
4477451
4477481
4477483
4477488
4477492
4477494
4477499
4477509
4477533
1
2
3
4
5
read count
chr18:5684668-5687891:+:L1HS:REF
chr18 5684688:5684873
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
5684688
5684704
5684721
5684727
5684730
5684739
5684770
5684805
5684821
5684828
5684832
5684839
5684849
5684873
1
2
3
4
5
6
read count
chr18:13975860-13981891:-:L1HS:REF
chr18 13981686:13981871
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
13981686
13981710
13981720
13981725
13981727
13981731
13981736
13981738
13981754
13981789
13981820
13981829
13981832
13981838
13981855
13981871
2
4
6
8
10
read count
chr18:37819737-37825798:+:L1HS:REF
chr18 37819758:37819943
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
37819758
37819774
37819791
37819797
37819800
37819840
37819875
37819893
37819898
37819902
37819904
37819909
37819919
37819943
5
10
15
read count
chr18:41775014-41781045:+:L1HS:REF
chr18 41775035:41775220
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
41775035
41775052
41775068
41775074
41775077
41775086
41775117
41775152
41775170
41775179
41775181
41775186
41775196
41775220
2
4
6
8
10
12
14
read count
chr18:42316969-42316971:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
read count
chr18:44021279-44024826:-:L1HS:REF
chr18 44024621:44024806
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
44024621
44024628
44024662
44024671
44024689
44024724
44024755
44024767
44024806
5
10
15
20
25
30
read count
chr18:47660373-47666427:+:L1HS:REF
chr18 47660391:47660576
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
47660391
47660407
47660424
47660430
47660433
47660442
47660473
47660508
47660526
47660531
47660535
47660537
47660542
47660552
47660576
1.0
1.5
2.0
2.5
3.0
read count
chr18:50343959-50349987:-:L1HS:REF
chr18 50349808:50349969
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
50349808
50349818
50349823
50349825
50349829
50349852
50349887
50349927
50349930
50349936
50349953
50349969
5
10
15
20
25
read count
chr18:62906292-62912314:+:L1HS:REF
chr18 62906313:62906498
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
62906313
62906329
62906346
62906352
62906355
62906364
62906395
62906430
62906457
62906459
62906464
62906474
62906498
10
20
30
read count
chr18:67603633-67605600:+:L1HS:REF
chr18 67603633:67603837
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
67603633
67603653
67603669
67603686
67603692
67603703
67603734
67603769
67603785
67603792
67603837
10
20
30
read count
chr18:70746549-70752581:-:L1HS:REF
chr18 70752376:70752561
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
70752376
70752400
70752410
70752417
70752421
70752426
70752444
70752479
70752510
70752519
70752522
70752528
70752545
70752561
1
2
3
4
5
read count
chr18:72966526-72972556:-:L1HS:REF
chr18 72972351:72972536
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
72972351
72972375
72972385
72972390
72972392
72972396
72972401
72972403
72972419
72972454
72972485
72972497
72972503
72972536
2
4
6
8
10
12
14
read count
chr18:75846851-75852883:+:L1HS:REF
chr18 75846872:75847057
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
75846872
75846888
75846905
75846911
75846914
75846923
75846954
75846989
75847007
75847012
75847016
75847018
75847023
75847033
75847057
1
2
3
4
5
6
7
read count
chr19:43864494-43867300:-:L1HS:REF
chr19 43867132:43867292
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
43867132
43867149
43867153
43867158
43867160
43867176
43867211
43867241
43867250
43867253
43867259
43867268
43867276
43867292
5
10
15
20
25
30
read count
chr20:7116194-7122199:-:L1HS:REF
chr20 7121995:7122180
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
7121995
7122019
7122029
7122034
7122036
7122045
7122063
7122098
7122129
7122138
7122141
7122147
7122164
7122180
1
2
3
4
5
6
7
read count
chr20:11632779-11638837:+:L1HS:REF
chr20 11632796:11632981
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
11632796
11632812
11632829
11632835
11632838
11632847
11632878
11632913
11632931
11632936
11632940
11632942
11632947
11632957
11632981
1
2
3
4
5
read count
chr20:12801017-12807044:-:L1HS:REF
chr20 12806842:12807027
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
12806842
12806866
12806876
12806881
12806883
12806887
12806892
12806910
12806945
12806976
12806985
12806988
12806994
12807011
12807027
1.0
1.5
2.0
2.5
3.0
read count
chr20:39977475-39977785:+:L1HS:REF
chr20 39977506:39977674
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
39977506
39977523
39977529
39977532
39977541
39977606
39977624
39977633
39977635
39977640
39977674
5
10
15
20
read count
chr20:55859566-55865521:+:L1HS:REF
chr20 55859584:55859769
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
55859584
55859600
55859617
55859623
55859635
55859666
55859701
55859719
55859724
55859728
55859730
55859735
55859745
55859769
2
4
6
8
read count
chr21:22253869-22253871:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
read count
chr22:15214621-15220667:-:L1HS:REF
chr22 15220462:15220647
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
15220462
15220486
15220501
15220503
15220507
15220512
15220530
15220565
15220596
15220605
15220608
15220614
15220631
15220647
1.0
1.2
1.4
1.6
1.8
2.0
read count
chr22:22131969-22131971:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr22:28059912-28059914:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chr22:28663283-28669315:+:L1HS:REF
chr22 28663304:28663489
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
28663304
28663320
28663337
28663343
28663355
28663386
28663421
28663439
28663444
28663448
28663450
28663455
28663465
28663489
10
20
30
40
50
read count
chr22:34549683-34555708:-:L1HS:REF
chr22 34555503:34555689
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
34555503
34555527
34555542
34555544
34555548
34555555
34555571
34555606
34555624
34555637
34555647
34555650
34555656
34555689
2
4
6
8
read count
chr22:48985761-48991792:-:L1HS:REF
chr22 48991587:48991772
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
48991587
48991611
48991621
48991626
48991628
48991632
48991637
48991639
48991655
48991690
48991721
48991730
48991733
48991739
48991756
48991772
1
2
3
4
5
6
read count
chrX:11707248-11713279:+:L1HS:REF
chrX 11707269:11707453
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
11707269
11707285
11707302
11707308
11707311
11707320
11707350
11707385
11707391
11707403
11707408
11707412
11707414
11707419
11707429
11707453
2
4
6
8
read count
chrX:11935296-11941314:-:L1HS:REF
chrX 11941110:11941294
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
11941110
11941134
11941144
11941149
11941151
11941155
11941160
11941178
11941213
11941243
11941252
11941255
11941261
11941278
11941294
2
4
6
8
read count
chrX:23238516-23244575:+:L1HS:REF
chrX 23238516:23238722
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
23238516
23238537
23238553
23238570
23238576
23238579
23238588
23238619
23238670
23238672
23238677
23238681
23238683
23238688
23238698
23238722
1
2
3
4
5
6
read count
chrX:26314417-26320446:-:L1HS:REF
chrX 26320243:26320428
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
26320243
26320267
26320277
26320282
26320284
26320293
26320311
26320346
26320377
26320386
26320389
26320395
26320412
26320428
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:50019456-50025505:-:L1HS:REF
chrX 50025300:50025485
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
50025300
50025324
50025334
50025339
50025341
50025345
50025350
50025352
50025368
50025403
50025434
50025443
50025446
50025452
50025469
50025485
2
4
6
8
10
read count
chrX:54118685-54124744:-:L1HS:REF
chrX 54124564:54124725
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
54124564
54124574
54124579
54124581
54124585
54124590
54124608
54124643
54124674
54124683
54124686
54124692
54124709
54124725
1.0
1.5
2.0
2.5
3.0
read count
chrX:56695884-56701916:+:L1HS:REF
chrX 56695905:56696090
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
56695905
56695921
56695938
56695944
56695947
56695956
56695987
56696022
56696040
56696045
56696049
56696056
56696066
56696090
1
2
3
4
5
6
read count
chrX:64013267-64019286:-:L1HS:REF
chrX 64019081:64019266
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
64019081
64019105
64019115
64019120
64019122
64019126
64019131
64019149
64019184
64019215
64019224
64019227
64019233
64019250
64019266
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:66180696-66186728:-:L1HS:REF
chrX 66186531:66186708
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
66186531
66186557
66186562
66186564
66186573
66186591
66186626
66186657
66186666
66186669
66186675
66186692
66186708
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:73106142-73112170:+:L1HS:REF
chrX 73106163:73106348
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
73106163
73106196
73106202
73106205
73106214
73106245
73106280
73106298
73106303
73106307
73106309
73106314
73106324
73106348
1
2
3
4
5
6
read count
chrX:73380991-73387013:+:L1HS:REF
chrX 73381003:73381188
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
73381003
73381019
73381036
73381042
73381045
73381085
73381120
73381138
73381143
73381147
73381149
73381154
73381188
2
4
6
8
10
read count
chrX:76233354-76239154:+:L1HS:REF
chrX 76233368:76233524
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
76233368
76233384
76233401
76233410
76233490
76233494
76233524
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:76322775-76328806:-:L1HS:REF
chrX 76328614:76328799
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
76328614
76328638
76328648
76328653
76328655
76328659
76328664
76328682
76328717
76328748
76328757
76328760
76328766
76328783
76328799
1
2
3
4
5
read count
chrX:80905077-80905430:-:L1HS:REF
chrX 80905251:80905396
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
80905251
80905266
80905277
80905295
80905330
80905361
80905370
80905373
80905396
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:83059584-83065637:-:L1HS:REF
chrX 83065432:83065617
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
83065432
83065456
83065466
83065471
83065473
83065477
83065482
83065500
83065535
83065566
83065575
83065578
83065584
83065601
83065617
1
2
3
4
5
6
read count
chrX:83542396-83548420:+:L1HS:REF
chrX 83542415:83542600
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
83542415
83542431
83542448
83542454
83542457
83542466
83542497
83542532
83542550
83542555
83542559
83542561
83542566
83542576
83542584
83542600
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:83838051-83839860:-:L1HS:REF
chrX 83839657:83839842
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
83839657
83839664
83839681
83839691
83839698
83839702
83839709
83839725
83839760
83839800
83839803
83839842
1
2
3
4
5
6
read count
chrX:85733685-85734499:+:L1HS:REF
chrX 85733764:85733807
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
85733764
85733775
85733807
5
10
15
read count
chrX:87821407-87827419:+:L1HS:REF
chrX 87821428:87821613
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
87821428
87821444
87821461
87821467
87821470
87821479
87821510
87821545
87821563
87821568
87821572
87821574
87821579
87821589
87821613
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:92254241-92256469:-:L1HS:REF
chrX 92256271:92256449
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
92256271
92256303
92256305
92256309
92256367
92256410
92256433
92256449
2
4
6
8
10
12
14
read count
chrX:96057824-96063842:-:L1HS:REF
chrX 96063638:96063823
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
96063638
96063662
96063672
96063679
96063683
96063688
96063706
96063741
96063781
96063784
96063790
96063807
96063823
1.0
1.2
1.4
1.6
1.8
2.0
read count
chrX:106469285-106475319:+:L1HS:REF
chrX 106469305:106469490
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
106469305
106469321
106469338
106469344
106469347
106469356
106469387
106469422
106469440
106469445
106469449
106469451
106469456
106469466
106469490
1
2
3
4
5
read count
chrX:112314520-112314522:-:L1HS:NONREF
L1HS 22:207
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
22
38
55
61
64
73
104
139
157
162
166
168
173
183
207
1
2
3
4
5
6
7
read count
chrX:119435468-119441493:-:L1HS:REF
chrX 119441291:119441475
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
119441291
119441315
119441325
119441330
119441332
119441336
119441341
119441359
119441394
119441424
119441433
119441436
119441442
119441459
119441475
5
10
15
20
25
read count
chrX:127362223-127368248:+:L1HS:REF
chrX 127362243:127362428
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
127362243
127362259
127362276
127362282
127362285
127362325
127362360
127362378
127362387
127362389
127362394
127362404
127362428
1.0
1.5
2.0
2.5
3.0
read count
chrX:130517377-130523407:+:L1HS:REF
chrX 130517396:130517581
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
130517396
130517412
130517429
130517435
130517438
130517447
130517478
130517513
130517531
130517540
130517542
130517547
130517557
130517581
1
2
3
4
5
read count
chrX:142477849-142483853:+:L1HS:REF
chrX 142477865:142478050
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
142477865
142477881
142477898
142477904
142477907
142477916
142477982
142478000
142478005
142478009
142478011
142478016
142478026
142478050
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:147653734-147659767:+:L1HS:REF
chrX 147653734:147653940
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
147653734
147653755
147653771
147653788
147653794
147653797
147653806
147653837
147653872
147653890
147653895
147653899
147653906
147653916
147653940
1
2
3
4
5
read count
chrX:149178166-149184185:-:L1HS:REF
chrX 149183992:149184177
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
149183992
149184026
149184031
149184033
149184037
149184042
149184060
149184095
149184126
149184138
149184144
149184161
149184177
1
2
3
4
5
read count
chrX:151330320-151336351:+:L1HS:REF
chrX 151330341:151330525
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
151330341
151330357
151330374
151330383
151330392
151330423
151330458
151330474
151330481
151330485
151330487
151330491
151330501
151330525
1.0
1.5
2.0
2.5
3.0
3.5
4.0
read count
chrX:155516016-155522048:-:L1HS:REF
chrX 155521843:155522028
methylated
unmethylated
unknown
position
proportion
patterns
1
2
3
4
5
6
7
8
9
10
11
155521843
155521867
155521877
155521882
155521884
155521888
155521893
155521911
155521946
155521977
155521986
155521989
155521995
155522012
155522028
5
10
15
20
25
read count
Visualisation settings
Methylation patterns
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Show methylation site spacing
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epiallele frequency
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Amplicon order
Drag the amplicon names up or down to reorder their display.
↕ chr1:34566055-34572105:-:L1HS:REF
↕ chr1:67078891-67084915:-:L1HS:REF
↕ chr1:68736693-68740136:-:L1HS:REF
↕ chr1:77000000-77005515:-:L1HS:REF
↕ chr1:85748519-85754548:+:L1HS:REF
↕ chr1:85927067-85933100:+:L1HS:REF
↕ chr1:86679080-86685111:-:L1HS:REF
↕ chr1:104770247-104776278:-:L1HS:REF
↕ chr1:104843833-104849864:-:L1HS:REF
↕ chr1:105315153-105315155:-:L1HS:NONREF
↕ chr1:113497220-113500000:+:L1HS:REF
↕ chr1:118852351-118858380:+:L1HS:REF
↕ chr1:121532230-121538261:-:L1HS:REF
↕ chr1:146717192-146723218:-:L1HS:REF
↕ chr1:165583897-165583899:-:L1HS:NONREF
↕ chr1:166243053-166249084:-:L1HS:REF
↕ chr1:174590323-174596379:-:L1HS:REF
↕ chr1:180866811-180872843:-:L1HS:REF
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↕ chrX:112314520-112314522:-:L1HS:NONREF
↕ chrX:119435468-119441493:-:L1HS:REF
↕ chrX:127362223-127368248:+:L1HS:REF
↕ chrX:130517377-130523407:+:L1HS:REF
↕ chrX:142477849-142483853:+:L1HS:REF
↕ chrX:147653734-147659767:+:L1HS:REF
↕ chrX:149178166-149184185:-:L1HS:REF
↕ chrX:151330320-151336351:+:L1HS:REF
↕ chrX:155516016-155522048:-:L1HS:REF
Methylation pattern visualisation created with
methpat
version 2.1.0.