Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 108749400 | 108755425 | chr3:108749400-108755425:+:L1HS:REF | L1HS | REF | full-length | RETNLB | 0.05 |
0.9 |
0.95 |
0.69 |
0.05 |
0.78 |
0.85 |
0.82 |
0.83 |
0.92 |
0.8 |
0.94 |
chr3 | 109199872 | 109205903 | chr3:109199872-109205903:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.92 |
0.96 |
0.68 |
0.15 |
0.86 |
0.87 |
0.89 |
0.94 |
0.9 |
0.9 |
0.98 |
chr3 | 109508196 | 109514400 | chr3:109508196-109514400:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.16 |
0.56 |
0.56 |
0.61 |
0.78 |
0.71 |
0.65 |
0.75 |
0.86 |
0.7 |
0.76 |
0.92 |
chr3 | 109527497 | 109529326 | chr3:109527497-109529326:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | 0.28 |
0.85 |
0.57 |
0.43 |
— | 1.0 |
0.62 |
0.71 |
0.94 |
chr3 | 109664743 | 109670946 | chr3:109664743-109670946:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | 0.09 |
0.19 |
0.26 |
0.94 |
0.45 |
0.1 |
0.57 |
0.95 |
0.29 |
0.84 |
0.99 |
chr3 | 110440086 | 110446113 | chr3:110440086-110446113:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.47 |
0.31 |
0.84 |
0.89 |
0.37 |
0.97 |
0.94 |
0.9 |
0.97 |
0.76 |
0.97 |
0.98 |
chr3 | 110632031 | 110638051 | chr3:110632031-110638051:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.57 |
0.78 |
0.59 |
0.76 |
0.85 |
0.64 |
0.91 |
— | 0.77 |
0.89 |
0.93 |
chr3 | 110768850 | 110769943 | chr3:110768850-110769943:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.35 |
0.93 |
0.2 |
0.97 |
0.95 |
0.95 |
0.93 |
0.97 |
0.73 |
0.98 |
0.96 |
chr3 | 110888814 | 110890548 | chr3:110888814-110890548:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.04 |
0.93 |
0.97 |
0.86 |
0.13 |
0.97 |
0.89 |
0.97 |
0.89 |
0.02 |
0.98 |
0.99 |
chr3 | 110911437 | 110917460 | chr3:110911437-110917460:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.58 |
0.8 |
0.56 |
0.91 |
0.92 |
0.82 |
0.91 |
0.98 |
0.67 |
0.95 |
0.97 |
chr3 | 111018716 | 111024745 | chr3:111018716-111024745:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.79 |
0.81 |
0.81 |
0.6 |
0.86 |
0.84 |
0.88 |
0.9 |
0.82 |
0.87 |
0.88 |
chr3 | 111556203 | 111562234 | chr3:111556203-111562234:-:L1PA2:REF | L1PA2 | REF | full-length | CD96 | 0.01 |
0.56 |
0.97 |
0.9 |
0.1 |
0.91 |
0.85 |
0.96 |
0.97 |
0.55 |
0.96 |
0.98 |
chr3 | 112211221 | 112217359 | chr3:112211221-112217359:+:L1PA5:REF | L1PA5 | REF | full-length | SLC9C1 | 0.03 |
0.2 |
— | 0.35 |
0.81 |
0.6 |
0.08 |
0.74 |
— | 0.55 |
0.65 |
— |
chr3 | 112233483 | 112239593 | chr3:112233483-112239593:-:L1PA5:REF | L1PA5 | REF | full-length | SLC9C1 | 0.01 |
0.7 |
0.35 |
0.43 |
0.9 |
— | 0.31 |
0.56 |
0.68 |
0.32 |
0.62 |
0.73 |
chr3 | 112659127 | 112665164 | chr3:112659127-112665164:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.13 |
0.87 |
0.72 |
0.06 |
0.97 |
0.44 |
0.88 |
0.92 |
0.55 |
0.98 |
0.99 |
chr3 | 112724116 | 112730267 | chr3:112724116-112730267:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02042 | 0.46 |
0.92 |
0.8 |
0.65 |
0.86 |
0.91 |
0.67 |
0.91 |
0.96 |
0.82 |
0.96 |
0.97 |
chr3 | 113366591 | 113372740 | chr3:113366591-113372740:+:L1PA6:REF | L1PA6 | REF | full-length | CFAP44 | 0.21 |
0.96 |
0.96 |
0.98 |
0.91 |
0.87 |
0.87 |
0.93 |
0.97 |
0.94 |
0.92 |
0.99 |
chr3 | 113471798 | 113477946 | chr3:113471798-113477946:+:L1PA3:REF | L1PA3 | REF | full-length | SPICE1 | — | — | — | — | 0.57 |
— | — | — | — | 0.7 |
0.99 |
— |
chr3 | 114276891 | 114282906 | chr3:114276891-114282906:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.19 |
0.87 |
0.94 |
0.85 |
0.93 |
0.92 |
0.75 |
0.93 |
0.91 |
0.89 |
0.94 |
0.97 |
chr3 | 115312305 | 115318470 | chr3:115312305-115318470:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.38 |
0.95 |
0.96 |
0.09 |
0.98 |
0.64 |
0.94 |
0.97 |
0.72 |
0.97 |
0.98 |
chr3 | 115737165 | 115738630 | chr3:115737165-115738630:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.17 |
0.67 |
0.45 |
0.84 |
0.56 |
0.96 |
0.68 |
0.87 |
0.26 |
0.57 |
0.98 |
chr3 | 116203398 | 116209426 | chr3:116203398-116209426:-:L1PA2:REF | L1PA2 | REF | full-length | LSAMP | 0.44 |
0.74 |
0.89 |
0.95 |
0.89 |
0.91 |
0.71 |
0.97 |
0.97 |
0.96 |
0.82 |
0.88 |
chr3 | 116359999 | 116366026 | chr3:116359999-116366026:+:L1HS:REF | L1HS | REF | full-length | LSAMP | 0.1 |
0.59 |
0.8 |
0.89 |
0.13 |
0.9 |
0.63 |
0.73 |
0.92 |
0.92 |
0.94 |
0.87 |
chr3 | 116455196 | 116461295 | chr3:116455196-116461295:+:L1PA4:REF | L1PA4 | REF | full-length | LSAMP | 0.0 |
0.43 |
0.67 |
0.47 |
0.84 |
0.8 |
0.4 |
0.91 |
0.95 |
0.85 |
0.88 |
0.66 |
chr3 | 118162603 | 118163477 | chr3:118162603-118163477:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.57 |
0.67 |
0.58 |
0.91 |
0.61 |
0.65 |
0.8 |
0.93 |
0.42 |
0.61 |
0.97 |
chr3 | 118914243 | 118920271 | chr3:118914243-118920271:+:L1PA2:REF | L1PA2 | REF | full-length | IGSF11 | 0.38 |
0.66 |
0.97 |
0.83 |
0.05 |
0.86 |
0.88 |
0.85 |
0.91 |
0.83 |
0.87 |
0.96 |
chr3 | 119001470 | 119007490 | chr3:119001470-119007490:-:L1PA2:REF | L1PA2 | REF | full-length | IGSF11 | 0.54 |
0.91 |
0.77 |
0.83 |
0.15 |
0.86 |
0.92 |
0.71 |
0.87 |
0.78 |
0.87 |
0.94 |
chr3 | 119045132 | 119051153 | chr3:119045132-119051153:+:L1PA3:REF | L1PA3 | REF | full-length | IGSF11 | — | 0.96 |
0.85 |
— | 0.66 |
0.77 |
0.69 |
0.75 |
0.77 |
0.77 |
0.76 |
0.96 |
chr3 | 119106586 | 119112745 | chr3:119106586-119112745:-:L1PA3:REF | L1PA3 | REF | full-length | IGSF11 | 0.01 |
0.8 |
0.81 |
0.33 |
0.85 |
0.66 |
0.45 |
0.76 |
0.8 |
0.48 |
0.72 |
0.91 |
chr3 | 119563180 | 119569317 | chr3:119563180-119569317:-:L1PA5:REF | L1PA5 | REF | full-length | CD80 | 0.48 |
0.69 |
0.84 |
0.39 |
0.91 |
0.81 |
0.45 |
0.77 |
0.96 |
0.82 |
0.8 |
0.88 |
chr3 | 120372615 | 120378640 | chr3:120372615-120378640:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.65 |
0.95 |
0.01 |
0.22 |
0.89 |
0.15 |
0.89 |
0.92 |
0.37 |
0.9 |
0.96 |
chr3 | 120573021 | 120579186 | chr3:120573021-120579186:+:L1HS:REF | L1HS | REF | full-length | — | — | 0.94 |
0.94 |
0.92 |
0.94 |
0.9 |
0.81 |
0.87 |
0.89 |
0.92 |
0.9 |
0.95 |
chr3 | 120973554 | 120979692 | chr3:120973554-120979692:-:L1PA3:REF | L1PA3 | REF | full-length | STXBP5L | — | 0.39 |
0.69 |
0.67 |
0.9 |
0.6 |
0.34 |
— | 0.95 |
0.47 |
0.67 |
0.99 |
chr3 | 121351482 | 121356825 | chr3:121351482-121356825:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | STXBP5L | 0.0 |
0.56 |
0.43 |
0.26 |
0.9 |
0.28 |
0.01 |
0.37 |
0.79 |
0.07 |
0.37 |
0.94 |
chr3 | 121810991 | 121817438 | chr3:121810991-121817438:+:L1PA8:REF | L1PA8 | REF | full-length | IQCB1 | — | 1.0 |
0.91 |
— | 0.96 |
1.0 |
1.0 |
1.0 |
0.92 |
0.9 |
0.97 |
0.97 |
chr3 | 121932760 | 121938786 | chr3:121932760-121938786:-:L1PA3:REF | L1PA3 | REF | full-length | SLC15A2 | 0.25 |
0.02 |
— | 0.26 |
0.12 |
0.66 |
— | — | — | — | 0.73 |
— |
chr3 | 122041911 | 122047938 | chr3:122041911-122047938:-:L1PA2:REF | L1PA2 | REF | full-length | CD86 | 0.01 |
0.95 |
0.89 |
0.7 |
0.2 |
0.74 |
0.65 |
0.74 |
0.92 |
0.85 |
0.78 |
0.97 |
chr3 | 122137076 | 122143228 | chr3:122137076-122143228:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.82 |
0.71 |
0.34 |
0.89 |
0.52 |
0.45 |
0.55 |
0.91 |
0.35 |
0.64 |
— |
chr3 | 122732871 | 122739022 | chr3:122732871-122739022:+:L1PA4:REF | L1PA4 | REF | full-length | HSPBAP1 | 0.88 |
0.95 |
0.96 |
0.01 |
0.87 |
0.96 |
0.88 |
0.99 |
0.97 |
0.96 |
0.98 |
0.94 |
chr3 | 123871878 | 123871880 | chr3:123871878-123871880:+:L1HS:NONREF | L1HS | KNR | — | MYLK | 0.16 |
0.98 |
0.97 |
0.75 |
0.13 |
0.99 |
0.96 |
0.99 |
0.89 |
0.95 |
0.99 |
0.98 |
chr3 | 125936638 | 125942696 | chr3:125936638-125942696:+:L1PA2:REF | L1PA2 | REF | full-length | ALG1L | 0.24 |
0.01 |
0.97 |
0.83 |
0.69 |
0.89 |
0.82 |
0.93 |
0.97 |
0.59 |
0.93 |
0.94 |
chr3 | 126331604 | 126337586 | chr3:126331604-126337586:+:L1PA2:REF | L1PA2 | REF | full-length | KLF15 | 0.1 |
0.85 |
0.65 |
0.37 |
0.68 |
0.61 |
0.8 |
0.72 |
0.91 |
0.61 |
0.71 |
0.71 |
chr3 | 126801074 | 126807208 | chr3:126801074-126807208:+:L1PA4:REF | L1PA4 | REF | full-length | CHCHD6 | 0.94 |
0.96 |
0.98 |
0.96 |
0.93 |
0.99 |
0.98 |
0.97 |
0.98 |
0.97 |
0.98 |
0.98 |
chr3 | 131041808 | 131045185 | chr3:131041808-131045185:+:L1P3:REF | L1P3 | REF | 3prime-truncated | NEK11 | 0.52 |
0.98 |
0.95 |
0.95 |
0.87 |
0.96 |
0.94 |
0.96 |
0.94 |
0.96 |
0.86 |
0.96 |
chr3 | 131115989 | 131122113 | chr3:131115989-131122113:-:L1PA5:REF | L1PA5 | REF | full-length | NEK11 | 0.01 |
0.85 |
0.76 |
— | 0.89 |
0.76 |
0.35 |
0.56 |
0.92 |
0.63 |
0.53 |
0.85 |
chr3 | 131331470 | 131337625 | chr3:131331470-131337625:+:L1PA3:REF | L1PA3 | REF | full-length | NEK11 | 0.25 |
0.03 |
0.94 |
0.83 |
0.37 |
0.93 |
0.16 |
0.88 |
0.65 |
0.03 |
0.93 |
0.98 |
chr3 | 132136909 | 132141753 | chr3:132136909-132141753:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.02 |
0.94 |
0.96 |
0.88 |
0.27 |
0.93 |
0.46 |
0.71 |
0.64 |
0.87 |
0.93 |
0.95 |
chr3 | 132371232 | 132377261 | chr3:132371232-132377261:-:L1PA2:REF | L1PA2 | REF | full-length | ACPP | 0.24 |
0.94 |
0.96 |
0.88 |
0.08 |
0.85 |
0.86 |
0.88 |
0.81 |
0.01 |
0.97 |
0.95 |
chr3 | 132741144 | 132747312 | chr3:132741144-132747312:-:L1PA6:REF | L1PA6 | REF | full-length | NPHP3-AS1 | 0.56 |
0.97 |
0.97 |
0.11 |
0.93 |
0.89 |
0.74 |
0.82 |
0.96 |
0.96 |
0.92 |
0.95 |
chr3 | 132760656 | 132766652 | chr3:132760656-132766652:-:L1PA2:REF | L1PA2 | REF | full-length | NPHP3-AS1 | 0.66 |
0.9 |
0.92 |
0.75 |
0.18 |
0.86 |
0.77 |
0.77 |
0.92 |
0.88 |
0.87 |
0.88 |