Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9 | 29450392 | 29451920 | chr9:29450392-29451920:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | 0.68 |
0.92 |
0.89 |
0.03 |
0.81 |
0.83 |
0.84 |
0.67 |
0.63 |
0.81 |
0.98 |
chr9 | 30106864 | 30112891 | chr9:30106864-30112891:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.41 |
0.58 |
0.47 |
0.88 |
0.64 |
0.62 |
0.69 |
0.94 |
0.39 |
0.67 |
0.97 |
chr9 | 30539475 | 30545465 | chr9:30539475-30545465:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.5 |
0.83 |
0.52 |
0.91 |
0.69 |
0.74 |
0.72 |
0.97 |
0.45 |
0.72 |
0.93 |
chr9 | 31002347 | 31003432 | chr9:31002347-31003432:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.49 |
0.42 |
0.21 |
0.71 |
0.42 |
0.16 |
0.38 |
0.73 |
0.07 |
0.55 |
0.91 |
chr9 | 31056094 | 31062222 | chr9:31056094-31062222:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.81 |
0.71 |
0.34 |
0.89 |
0.63 |
0.6 |
0.7 |
0.96 |
0.21 |
0.69 |
0.98 |
chr9 | 31224956 | 31230636 | chr9:31224956-31230636:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.67 |
0.64 |
0.26 |
0.65 |
0.52 |
0.16 |
0.64 |
0.64 |
0.07 |
0.53 |
0.84 |
chr9 | 31294065 | 31300087 | chr9:31294065-31300087:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.79 |
0.78 |
0.67 |
0.79 |
0.81 |
0.58 |
0.66 |
0.98 |
0.45 |
0.74 |
0.89 |
chr9 | 31883172 | 31889274 | chr9:31883172-31889274:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.94 |
0.62 |
0.57 |
0.87 |
0.92 |
0.67 |
0.98 |
0.75 |
0.93 |
0.55 |
0.67 |
0.97 |
chr9 | 31932203 | 31938375 | chr9:31932203-31938375:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.67 |
— | 0.86 |
0.69 |
0.99 |
0.6 |
— | 0.56 |
0.7 |
0.98 |
chr9 | 32149073 | 32155113 | chr9:32149073-32155113:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.25 |
0.69 |
0.87 |
0.87 |
0.79 |
0.86 |
0.96 |
0.84 |
0.87 |
0.75 |
0.85 |
0.94 |
chr9 | 32225047 | 32231059 | chr9:32225047-32231059:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.76 |
0.54 |
0.75 |
0.89 |
0.64 |
0.82 |
0.62 |
0.92 |
0.41 |
0.64 |
0.95 |
chr9 | 32710379 | 32716388 | chr9:32710379-32716388:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.98 |
0.94 |
0.79 |
0.92 |
0.81 |
0.85 |
0.82 |
0.97 |
0.78 |
0.8 |
0.95 |
chr9 | 32729016 | 32735047 | chr9:32729016-32735047:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.13 |
0.82 |
0.8 |
0.8 |
0.77 |
0.67 |
0.71 |
0.78 |
0.95 |
0.64 |
0.76 |
0.79 |
chr9 | 34526550 | 34532701 | chr9:34526550-34532701:-:L1PA5:REF | L1PA5 | REF | full-length | ENHO | 0.09 |
0.93 |
0.87 |
0.71 |
0.87 |
0.79 |
0.85 |
0.79 |
0.97 |
0.82 |
0.82 |
0.9 |
chr9 | 34761698 | 34767854 | chr9:34761698-34767854:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.23 |
0.93 |
0.98 |
0.99 |
0.71 |
0.82 |
0.92 |
0.87 |
0.86 |
0.94 |
0.88 |
0.93 |
chr9 | 34845598 | 34851753 | chr9:34845598-34851753:-:L1PA3:REF | L1PA3 | REF | full-length | FAM205BP | 0.01 |
0.02 |
0.87 |
0.96 |
0.89 |
0.76 |
0.67 |
0.74 |
0.94 |
0.63 |
0.81 |
0.93 |
chr9 | 40915781 | 40921920 | chr9:40915781-40921920:+:L1PA3:REF | L1PA3 | REF | full-length | MIR1299 | 0.07 |
0.16 |
0.36 |
0.24 |
0.67 |
0.45 |
0.24 |
0.41 |
0.64 |
0.11 |
0.38 |
0.66 |
chr9 | 42437015 | 42438220 | chr9:42437015-42438220:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
— | 0.55 |
— | 0.81 |
0.44 |
0.04 |
0.33 |
— | 0.59 |
0.53 |
0.76 |
chr9 | 62822443 | 62828465 | chr9:62822443-62828465:-:L1PA6:REF | L1PA6 | REF | full-length | LOC100132249 | 0.0 |
0.86 |
0.78 |
0.36 |
0.78 |
0.48 |
0.2 |
0.21 |
0.57 |
0.89 |
0.33 |
0.83 |
chr9 | 63913382 | 63916426 | chr9:63913382-63916426:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.23 |
0.69 |
0.9 |
— | 0.88 |
0.63 |
0.52 |
0.62 |
0.79 |
0.37 |
0.68 |
0.79 |
chr9 | 65709351 | 65715424 | chr9:65709351-65715424:-:L1PA3:REF | L1PA3 | REF | full-length | CBWD5 | 0.76 |
0.82 |
0.91 |
0.88 |
0.28 |
0.94 |
0.92 |
0.87 |
— | 0.92 |
0.94 |
0.95 |
chr9 | 68593275 | 68594616 | chr9:68593275-68594616:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.21 |
— | 0.91 |
0.15 |
0.7 |
0.58 |
0.41 |
0.6 |
0.88 |
0.88 |
0.53 |
0.69 |
chr9 | 69434794 | 69440931 | chr9:69434794-69440931:-:L1PA4:REF | L1PA4 | REF | full-length | APBA1 | 0.01 |
0.93 |
0.97 |
0.55 |
0.9 |
0.97 |
0.76 |
0.93 |
0.98 |
0.88 |
0.98 |
0.86 |
chr9 | 69477107 | 69483129 | chr9:69477107-69483129:+:L1PA2:REF | L1PA2 | REF | full-length | APBA1 | 0.02 |
0.03 |
0.8 |
0.77 |
0.52 |
0.98 |
0.92 |
0.89 |
0.94 |
0.76 |
0.85 |
0.81 |
chr9 | 69506051 | 69512070 | chr9:69506051-69512070:+:L1PA2:REF | L1PA2 | REF | full-length | APBA1 | 0.03 |
0.09 |
0.97 |
0.84 |
0.61 |
0.98 |
0.96 |
0.98 |
0.95 |
0.78 |
0.98 |
0.94 |
chr9 | 70199056 | 70205081 | chr9:70199056-70205081:-:L1PA2:REF | L1PA2 | REF | full-length | MAMDC2 | — | — | 0.98 |
0.6 |
0.11 |
0.86 |
0.95 |
0.96 |
— | 0.28 |
0.94 |
0.94 |
chr9 | 70232212 | 70234017 | chr9:70232212-70234017:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SMC5-AS1 | 0.09 |
0.98 |
0.91 |
0.31 |
0.93 |
0.97 |
0.98 |
0.97 |
0.94 |
0.83 |
0.74 |
0.96 |
chr9 | 70240311 | 70246471 | chr9:70240311-70246471:+:L1PA6:REF | L1PA6 | REF | full-length | SMC5-AS1 | 0.12 |
0.95 |
0.93 |
0.14 |
0.85 |
0.82 |
0.95 |
0.86 |
0.98 |
0.88 |
0.94 |
0.96 |
chr9 | 72000000 | 72000629 | chr9:72000000-72000629:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.96 |
0.94 |
0.89 |
0.94 |
0.94 |
0.79 |
0.87 |
0.93 |
0.89 |
0.93 |
0.95 |
chr9 | 72072195 | 72076757 | chr9:72072195-72076757:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.48 |
0.39 |
0.83 |
0.6 |
0.21 |
0.14 |
0.35 |
0.48 |
0.42 |
0.31 |
0.66 |
chr9 | 74424274 | 74430304 | chr9:74424274-74430304:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.76 |
0.85 |
0.66 |
0.08 |
— | 0.81 |
0.75 |
0.94 |
0.9 |
0.81 |
0.76 |
chr9 | 75340569 | 75346725 | chr9:75340569-75346725:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | 0.81 |
0.63 |
0.34 |
— | — | 0.37 |
0.55 |
0.81 |
chr9 | 75701100 | 75707247 | chr9:75701100-75707247:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.44 |
0.8 |
0.2 |
0.89 |
0.12 |
0.43 |
0.6 |
0.84 |
0.39 |
0.66 |
0.76 |
chr9 | 75762467 | 75763171 | chr9:75762467-75763171:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.43 |
0.68 |
0.24 |
0.84 |
0.67 |
0.36 |
0.71 |
0.9 |
0.36 |
0.64 |
0.87 |
chr9 | 77408305 | 77411381 | chr9:77408305-77411381:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | VPS13A | 0.97 |
0.89 |
0.94 |
0.98 |
0.92 |
0.97 |
0.91 |
0.98 |
0.96 |
0.97 |
0.9 |
0.98 |
chr9 | 77687672 | 77688390 | chr9:77687672-77688390:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.3 |
0.06 |
0.85 |
0.7 |
0.84 |
0.9 |
0.66 |
0.86 |
0.95 |
0.84 |
0.91 |
0.91 |
chr9 | 79097851 | 79103879 | chr9:79097851-79103879:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.44 |
0.91 |
0.88 |
0.21 |
0.96 |
0.62 |
0.95 |
0.95 |
0.84 |
0.96 |
0.96 |
chr9 | 79438972 | 79444977 | chr9:79438972-79444977:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.91 |
0.75 |
0.37 |
0.8 |
0.33 |
0.59 |
0.39 |
0.7 |
0.41 |
0.81 |
chr9 | 80300144 | 80301724 | chr9:80300144-80301724:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | 0.72 |
0.05 |
0.76 |
0.36 |
— | 0.46 |
— | 0.57 |
0.27 |
0.07 |
chr9 | 80344878 | 80345776 | chr9:80344878-80345776:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.72 |
0.55 |
0.24 |
0.75 |
0.47 |
0.42 |
0.68 |
0.72 |
0.59 |
0.44 |
0.59 |
chr9 | 80654116 | 80660135 | chr9:80654116-80660135:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.91 |
— | — | 0.72 |
— | 0.47 |
— | — | — | 0.86 |
0.75 |
chr9 | 80741662 | 80747689 | chr9:80741662-80747689:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.42 |
0.85 |
0.62 |
0.28 |
0.81 |
0.72 |
0.95 |
0.93 |
0.21 |
0.95 |
0.88 |
chr9 | 81217155 | 81223297 | chr9:81217155-81223297:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.73 |
0.92 |
0.46 |
0.92 |
0.79 |
0.66 |
0.93 |
0.98 |
0.88 |
0.91 |
0.62 |
chr9 | 82751810 | 82757866 | chr9:82751810-82757866:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.55 |
0.94 |
0.65 |
0.55 |
0.75 |
0.56 |
0.81 |
0.89 |
0.94 |
0.68 |
0.86 |
chr9 | 82769371 | 82775374 | chr9:82769371-82775374:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.53 |
0.93 |
0.29 |
0.76 |
0.7 |
0.75 |
0.81 |
0.95 |
0.14 |
0.74 |
0.73 |
chr9 | 83049539 | 83055571 | chr9:83049539-83055571:-:L1HS:REF | L1HS | REF | full-length | RASEF | 0.04 |
0.97 |
0.99 |
0.91 |
0.25 |
0.93 |
0.89 |
0.94 |
0.92 |
0.99 |
0.9 |
0.91 |
chr9 | 83222905 | 83228949 | chr9:83222905-83228949:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.96 |
0.97 |
0.78 |
0.26 |
0.86 |
0.92 |
0.78 |
0.77 |
0.93 |
0.75 |
— |
chr9 | 85071665 | 85077678 | chr9:85071665-85077678:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.85 |
0.96 |
0.7 |
0.2 |
0.71 |
0.77 |
0.55 |
0.57 |
0.92 |
0.47 |
0.86 |
chr9 | 85717679 | 85723818 | chr9:85717679-85723818:-:L1PA6:REF | L1PA6 | REF | full-length | AGTPBP1 | 0.78 |
0.97 |
0.96 |
0.97 |
0.59 |
0.97 |
0.98 |
0.95 |
0.88 |
0.98 |
0.93 |
0.99 |
chr9 | 86088457 | 86091219 | chr9:86088457-86091219:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | GOLM1 | 0.0 |
0.97 |
0.95 |
0.82 |
0.94 |
0.97 |
0.62 |
0.97 |
0.95 |
0.96 |
0.96 |
0.98 |