Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19 | 23890445 | 23896455 | chr19:23890445-23896455:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.95 |
0.77 |
0.67 |
0.83 |
0.8 |
0.32 |
0.82 |
0.79 |
0.55 |
0.68 |
0.77 |
chr19 | 24013378 | 24019477 | chr19:24013378-24019477:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.78 |
0.71 |
0.61 |
0.85 |
0.72 |
0.55 |
0.7 |
0.78 |
0.36 |
0.73 |
0.59 |
chr19 | 24115697 | 24117843 | chr19:24115697-24117843:-:L1P1:REF | L1P1 | REF | 3prime-truncated | ZNF254 | 0.77 |
0.98 |
0.97 |
0.98 |
0.91 |
0.98 |
0.98 |
0.98 |
0.92 |
0.93 |
0.98 |
0.78 |
chr19 | 28050235 | 28050565 | chr19:28050235-28050565:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.05 |
0.95 |
0.79 |
0.1 |
0.82 |
0.31 |
0.14 |
0.19 |
0.86 |
0.18 |
0.27 |
0.25 |
chr19 | 28087649 | 28092997 | chr19:28087649-28092997:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.08 |
0.75 |
0.11 |
0.84 |
0.52 |
0.15 |
0.51 |
0.88 |
0.24 |
0.49 |
0.32 |
chr19 | 28177582 | 28183612 | chr19:28177582-28183612:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.77 |
0.73 |
0.21 |
0.9 |
0.59 |
0.31 |
0.59 |
0.92 |
0.29 |
0.64 |
0.63 |
chr19 | 28269706 | 28275728 | chr19:28269706-28275728:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.08 |
0.72 |
0.19 |
0.7 |
0.56 |
0.2 |
0.53 |
0.72 |
0.13 |
0.47 |
0.58 |
chr19 | 29132609 | 29138743 | chr19:29132609-29138743:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.78 |
0.58 |
0.38 |
0.85 |
0.54 |
0.59 |
0.65 |
0.83 |
0.36 |
0.62 |
0.66 |
chr19 | 29225779 | 29231807 | chr19:29225779-29231807:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.89 |
0.84 |
0.35 |
0.85 |
0.75 |
0.49 |
0.83 |
0.89 |
0.66 |
0.74 |
0.75 |
chr19 | 29348349 | 29354473 | chr19:29348349-29354473:+:L1PA4:REF | L1PA4 | REF | full-length | LOC284395 | 0.01 |
0.28 |
0.08 |
0.01 |
0.75 |
0.12 |
0.01 |
0.09 |
0.59 |
0.01 |
0.09 |
0.03 |
chr19 | 29459290 | 29465188 | chr19:29459290-29465188:+:L1PA2:REF | L1PA2 | REF | full-length | LOC284395 | 0.03 |
0.92 |
— | — | 0.48 |
0.85 |
0.74 |
0.84 |
0.92 |
— | 0.84 |
0.93 |
chr19 | 32587512 | 32593595 | chr19:32587512-32593595:-:L1PA3:REF | L1PA3 | REF | full-length | PDCD5 | — | — | — | — | 0.65 |
— | 0.98 |
— | — | 0.99 |
0.89 |
0.89 |
chr19 | 32846037 | 32852182 | chr19:32846037-32852182:+:L1PA4:REF | L1PA4 | REF | full-length | SLC7A9 | — | 0.37 |
0.82 |
— | 0.69 |
0.88 |
0.96 |
— | — | 0.71 |
0.81 |
0.94 |
chr19 | 34617843 | 34618159 | chr19:34617843-34618159:-:L1P1:REF | L1P1 | REF | 3prime-truncated | SCGB1B2P | 0.01 |
0.89 |
0.71 |
0.59 |
0.85 |
0.7 |
0.56 |
0.62 |
0.84 |
0.35 |
0.74 |
0.86 |
chr19 | 34700381 | 34706494 | chr19:34700381-34706494:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.4 |
0.37 |
0.04 |
0.78 |
0.54 |
0.39 |
0.48 |
0.72 |
0.04 |
0.55 |
0.72 |
chr19 | 34860177 | 34866213 | chr19:34860177-34866213:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.01 |
0.16 |
0.74 |
0.03 |
0.06 |
0.01 |
0.05 |
0.03 |
0.05 |
0.03 |
0.38 |
chr19 | 36697923 | 36704066 | chr19:36697923-36704066:-:L1PA3:REF | L1PA3 | REF | full-length | ZNF567 | 0.63 |
0.99 |
0.99 |
0.98 |
0.96 |
0.98 |
0.97 |
0.98 |
— | 0.96 |
0.98 |
— |
chr19 | 37048721 | 37054503 | chr19:37048721-37054503:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.65 |
0.21 |
0.06 |
0.88 |
0.55 |
0.08 |
0.62 |
0.65 |
0.06 |
0.59 |
0.08 |
chr19 | 37116469 | 37122625 | chr19:37116469-37122625:+:L1PA4:REF | L1PA4 | REF | full-length | ZNF420 | 0.46 |
0.96 |
0.95 |
0.99 |
0.87 |
0.98 |
0.99 |
0.99 |
0.94 |
0.96 |
0.97 |
0.68 |
chr19 | 37837502 | 37843533 | chr19:37837502-37843533:+:L1PA2:REF | L1PA2 | REF | full-length | LOC100631378 | 0.04 |
0.89 |
0.78 |
0.83 |
0.15 |
0.76 |
0.8 |
0.75 |
0.86 |
0.73 |
0.87 |
0.89 |
chr19 | 39649212 | 39655243 | chr19:39649212-39655243:+:L1PA6:REF | L1PA6 | REF | full-length | LGALS16 | 0.0 |
0.08 |
0.12 |
0.02 |
0.5 |
0.04 |
0.03 |
0.1 |
— | 0.01 |
0.06 |
0.0 |
chr19 | 40037915 | 40044054 | chr19:40037915-40044054:-:L1PA4:REF | L1PA4 | REF | full-length | ZNF780B | 0.73 |
0.96 |
0.96 |
0.82 |
0.94 |
0.97 |
0.98 |
0.99 |
0.97 |
0.75 |
0.97 |
0.96 |
chr19 | 41033056 | 41036044 | chr19:41033056-41036044:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.93 |
0.91 |
0.42 |
0.85 |
0.49 |
0.2 |
0.6 |
0.84 |
0.45 |
0.53 |
0.92 |
chr19 | 41098534 | 41102820 | chr19:41098534-41102820:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CYP2A13 | 0.02 |
0.74 |
0.68 |
0.02 |
0.89 |
0.37 |
0.01 |
0.44 |
0.79 |
0.05 |
0.49 |
0.43 |
chr19 | 42769102 | 42775111 | chr19:42769102-42775111:-:L1PA3:REF | L1PA3 | REF | full-length | PSG8 | 0.01 |
0.74 |
0.9 |
0.59 |
0.35 |
0.89 |
0.34 |
0.88 |
0.69 |
0.43 |
0.89 |
0.76 |
chr19 | 43864494 | 43867300 | chr19:43864494-43867300:-:L1HS:REF | L1HS | REF | 3prime-truncated | ZNF404 | 0.03 |
0.93 |
0.86 |
0.85 |
0.45 |
0.86 |
0.83 |
0.91 |
0.96 |
0.73 |
0.92 |
0.93 |
chr19 | 53205936 | 53210763 | chr19:53205936-53210763:-:L1PA7:REF | L1PA7 | REF | full-length | ZNF818P | — | 0.95 |
0.24 |
— | 0.98 |
0.94 |
0.45 |
0.96 |
— | 0.01 |
0.94 |
0.63 |
chr19 | 55822401 | 55828429 | chr19:55822401-55828429:+:L1PA2:REF | L1PA2 | REF | full-length | NLRP11 | 0.02 |
0.81 |
0.84 |
— | 0.1 |
0.79 |
— | 0.71 |
— | 0.51 |
0.74 |
— |
chr20 | 129964 | 135977 | chr20:129964-135977:+:L1PA2:REF | L1PA2 | REF | full-length | DEFB126 | 0.6 |
0.95 |
0.84 |
0.74 |
0.05 |
0.81 |
0.91 |
0.82 |
0.94 |
0.79 |
0.86 |
0.93 |
chr20 | 2500825 | 2506958 | chr20:2500825-2506958:+:L1PA4:REF | L1PA4 | REF | full-length | ZNF343 | 0.96 |
0.97 |
0.98 |
0.98 |
0.92 |
0.98 |
0.98 |
0.99 |
0.97 |
0.97 |
0.99 |
0.98 |
chr20 | 4283734 | 4289881 | chr20:4283734-4289881:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.23 |
0.02 |
0.93 |
0.84 |
0.87 |
0.91 |
0.78 |
0.88 |
0.87 |
0.66 |
0.88 |
0.66 |
chr20 | 4500000 | 4501964 | chr20:4500000-4501964:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
— | 0.82 |
0.16 |
0.83 |
0.92 |
0.14 |
0.87 |
— | 0.08 |
0.93 |
0.97 |
chr20 | 5235769 | 5242179 | chr20:5235769-5242179:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.04 |
0.38 |
0.61 |
0.12 |
0.83 |
0.37 |
0.09 |
0.38 |
0.82 |
0.05 |
0.31 |
0.36 |
chr20 | 6315821 | 6321844 | chr20:6315821-6321844:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.94 |
0.74 |
0.72 |
0.02 |
0.76 |
0.84 |
0.67 |
0.77 |
0.49 |
0.81 |
0.8 |
chr20 | 7116194 | 7122199 | chr20:7116194-7122199:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.9 |
0.94 |
0.9 |
0.16 |
0.86 |
0.87 |
0.87 |
0.97 |
0.78 |
0.93 |
0.87 |
chr20 | 7957165 | 7958671 | chr20:7957165-7958671:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.66 |
0.58 |
0.17 |
0.87 |
0.59 |
0.17 |
0.59 |
0.86 |
0.24 |
0.71 |
0.87 |
chr20 | 8108866 | 8114917 | chr20:8108866-8114917:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.29 |
0.93 |
0.01 |
0.05 |
0.9 |
0.01 |
0.95 |
0.73 |
0.1 |
0.89 |
0.01 |
chr20 | 8595101 | 8601127 | chr20:8595101-8601127:-:L1PA2:REF | L1PA2 | REF | full-length | PLCB1 | 0.05 |
0.96 |
0.91 |
0.29 |
0.04 |
0.87 |
0.98 |
0.91 |
0.65 |
0.01 |
0.98 |
0.01 |
chr20 | 11632779 | 11638837 | chr20:11632779-11638837:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.91 |
0.92 |
0.91 |
0.11 |
0.79 |
0.74 |
0.83 |
0.91 |
0.71 |
0.85 |
0.9 |
chr20 | 12123711 | 12129700 | chr20:12123711-12129700:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.93 |
— | 0.42 |
0.7 |
0.54 |
— | — | 0.29 |
0.62 |
0.76 |
chr20 | 12443116 | 12449140 | chr20:12443116-12449140:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.69 |
0.76 |
0.85 |
0.77 |
0.82 |
0.68 |
0.85 |
0.93 |
0.39 |
0.78 |
0.85 |
chr20 | 12582507 | 12588531 | chr20:12582507-12588531:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.86 |
0.86 |
0.74 |
0.75 |
0.7 |
0.7 |
0.7 |
0.9 |
0.54 |
0.74 |
0.76 |
chr20 | 12801017 | 12807044 | chr20:12801017-12807044:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.73 |
0.8 |
0.74 |
0.45 |
0.75 |
0.67 |
0.7 |
0.87 |
0.63 |
0.69 |
0.69 |
chr20 | 13052072 | 13053986 | chr20:13052072-13053986:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SPTLC3 | — | 0.98 |
0.93 |
— | 0.91 |
0.68 |
0.98 |
0.82 |
— | 0.33 |
0.88 |
— |
chr20 | 16519714 | 16522903 | chr20:16519714-16522903:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | KIF16B | 0.89 |
0.64 |
0.98 |
0.86 |
0.68 |
0.82 |
0.8 |
0.78 |
0.77 |
0.91 |
0.9 |
0.8 |
chr20 | 17114790 | 17120918 | chr20:17114790-17120918:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.67 |
0.74 |
0.44 |
0.78 |
0.58 |
0.38 |
0.63 |
0.79 |
0.39 |
0.61 |
0.81 |
chr20 | 18332912 | 18339088 | chr20:18332912-18339088:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.25 |
0.9 |
0.98 |
0.77 |
0.81 |
0.94 |
0.86 |
0.8 |
0.9 |
— | 0.83 |
0.9 |
chr20 | 18755270 | 18761370 | chr20:18755270-18761370:-:L1PA4:REF | L1PA4 | REF | full-length | DTD1 | 0.33 |
0.97 |
0.96 |
0.94 |
0.93 |
0.96 |
0.96 |
0.97 |
0.95 |
0.93 |
0.97 |
0.99 |
chr20 | 18935844 | 18942312 | chr20:18935844-18942312:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.05 |
0.9 |
0.8 |
0.0 |
0.88 |
0.62 |
0.05 |
0.64 |
0.91 |
0.05 |
0.38 |
0.82 |
chr20 | 21887655 | 21893685 | chr20:21887655-21893685:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.56 |
0.7 |
0.5 |
0.6 |
0.68 |
0.69 |
0.76 |
0.79 |
0.39 |
0.5 |
0.72 |