Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 80976869 | 80982806 | chrX:80976869-80982806:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.15 |
0.62 |
0.65 |
0.41 |
0.7 |
0.78 |
0.78 |
0.61 |
0.91 |
0.57 |
0.84 |
0.98 |
chrX | 81026834 | 81032986 | chrX:81026834-81032986:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.19 |
0.52 |
0.43 |
0.28 |
0.65 |
0.62 |
0.72 |
0.86 |
0.25 |
0.74 |
0.97 |
chrX | 81143378 | 81149629 | chrX:81143378-81149629:+:L1PA7:REF | L1PA7 | REF | full-length | HMGN5 | 0.01 |
0.43 |
0.01 |
0.0 |
0.83 |
0.13 |
0.01 |
0.08 |
0.44 |
0.01 |
0.15 |
0.89 |
chrX | 81339892 | 81345906 | chrX:81339892-81345906:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.31 |
0.92 |
0.67 |
0.65 |
0.91 |
0.98 |
0.78 |
0.83 |
0.97 |
0.7 |
0.98 |
0.98 |
chrX | 81683940 | 81688835 | chrX:81683940-81688835:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.17 |
0.36 |
0.27 |
0.88 |
0.44 |
0.16 |
0.71 |
0.67 |
0.26 |
0.52 |
0.75 |
chrX | 81841153 | 81847184 | chrX:81841153-81847184:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.49 |
0.68 |
— | 0.83 |
0.74 |
0.72 |
— | 0.92 |
0.44 |
0.82 |
0.98 |
chrX | 81981453 | 81987740 | chrX:81981453-81987740:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.41 |
0.19 |
0.02 |
0.88 |
0.2 |
0.01 |
0.21 |
0.74 |
0.01 |
0.09 |
0.99 |
chrX | 82788276 | 82794455 | chrX:82788276-82794455:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.03 |
0.85 |
0.21 |
0.33 |
0.9 |
0.67 |
0.41 |
0.67 |
— | 0.03 |
0.61 |
0.96 |
chrX | 82802801 | 82808940 | chrX:82802801-82808940:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.69 |
0.2 |
— | 0.85 |
0.27 |
0.04 |
0.43 |
0.91 |
0.08 |
0.5 |
0.93 |
chrX | 82852260 | 82853243 | chrX:82852260-82853243:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
— | 0.01 |
0.03 |
0.72 |
0.0 |
0.03 |
0.03 |
— | 0.01 |
0.11 |
0.84 |
chrX | 83059584 | 83065637 | chrX:83059584-83065637:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.9 |
0.7 |
0.66 |
0.74 |
0.78 |
0.71 |
0.83 |
0.91 |
0.58 |
0.84 |
0.97 |
chrX | 83284220 | 83285979 | chrX:83284220-83285979:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.17 |
0.3 |
0.23 |
0.87 |
0.75 |
0.45 |
0.79 |
0.95 |
0.15 |
0.79 |
0.97 |
chrX | 83407135 | 83413200 | chrX:83407135-83413200:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.56 |
0.54 |
0.39 |
0.83 |
0.56 |
0.08 |
0.69 |
0.93 |
0.27 |
0.62 |
0.98 |
chrX | 83542396 | 83548420 | chrX:83542396-83548420:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.7 |
0.72 |
0.68 |
0.12 |
0.78 |
0.88 |
0.72 |
0.9 |
0.59 |
0.82 |
0.98 |
chrX | 83648724 | 83655748 | chrX:83648724-83655748:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.54 |
0.4 |
0.5 |
0.84 |
0.56 |
0.32 |
0.55 |
0.92 |
0.03 |
0.58 |
0.99 |
chrX | 83750500 | 83756648 | chrX:83750500-83756648:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.42 |
0.52 |
0.53 |
0.94 |
0.67 |
0.65 |
0.82 |
— | 0.38 |
0.76 |
0.96 |
chrX | 83838051 | 83839860 | chrX:83838051-83839860:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.64 |
0.58 |
0.63 |
0.84 |
0.75 |
0.73 |
0.78 |
0.95 |
0.47 |
0.7 |
0.96 |
chrX | 84079011 | 84080387 | chrX:84079011-84080387:+:L1P3:REF | L1P3 | REF | 3prime-truncated | RPS6KA6 | 0.02 |
0.39 |
0.35 |
0.09 |
0.63 |
0.84 |
0.03 |
0.54 |
0.84 |
0.31 |
0.83 |
0.88 |
chrX | 85529213 | 85535230 | chrX:85529213-85535230:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.76 |
0.4 |
0.46 |
0.12 |
— | 0.01 |
— | — | 0.14 |
0.35 |
0.98 |
chrX | 85733685 | 85734499 | chrX:85733685-85734499:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.73 |
0.16 |
0.04 |
0.87 |
0.38 |
0.54 |
0.71 |
0.93 |
0.16 |
0.64 |
0.93 |
chrX | 85751722 | 85757867 | chrX:85751722-85757867:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.89 |
0.68 |
0.06 |
0.93 |
0.5 |
0.06 |
0.57 |
0.87 |
0.29 |
0.51 |
0.98 |
chrX | 86054298 | 86054856 | chrX:86054298-86054856:-:L1P2:REF | L1P2 | REF | 3prime-truncated | CHM | 0.11 |
0.88 |
0.37 |
0.56 |
0.85 |
0.72 |
0.68 |
0.71 |
0.92 |
0.44 |
0.72 |
0.98 |
chrX | 86113292 | 86119348 | chrX:86113292-86119348:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.86 |
0.71 |
0.73 |
0.83 |
0.72 |
0.78 |
0.79 |
0.94 |
0.57 |
0.73 |
0.94 |
chrX | 86289420 | 86295425 | chrX:86289420-86295425:-:L1PA3:REF | L1PA3 | REF | full-length | DACH2 | — | — | — | — | 0.1 |
— | — | — | — | — | 0.83 |
0.88 |
chrX | 86969631 | 86975651 | chrX:86969631-86975651:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.72 |
0.65 |
0.62 |
0.63 |
0.79 |
0.65 |
0.78 |
0.94 |
0.44 |
0.8 |
0.98 |
chrX | 87116306 | 87122337 | chrX:87116306-87122337:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.53 |
0.38 |
0.24 |
0.87 |
0.5 |
0.06 |
0.47 |
0.78 |
0.09 |
0.41 |
0.81 |
chrX | 87443100 | 87449269 | chrX:87443100-87449269:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.52 |
0.84 |
0.63 |
0.42 |
0.89 |
0.66 |
0.71 |
0.8 |
0.93 |
0.17 |
0.78 |
0.98 |
chrX | 87821407 | 87827419 | chrX:87821407-87827419:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.9 |
0.75 |
0.64 |
0.39 |
0.81 |
0.85 |
0.75 |
0.91 |
0.61 |
0.86 |
0.98 |
chrX | 88207885 | 88213919 | chrX:88207885-88213919:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.7 |
0.72 |
0.79 |
0.51 |
0.84 |
0.82 |
0.76 |
0.92 |
0.55 |
0.83 |
0.92 |
chrX | 88781409 | 88787562 | chrX:88781409-88787562:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.8 |
0.67 |
0.73 |
0.92 |
0.77 |
0.71 |
0.64 |
0.95 |
0.42 |
0.8 |
0.85 |
chrX | 89292629 | 89298657 | chrX:89292629-89298657:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.77 |
0.55 |
0.63 |
0.9 |
0.69 |
0.62 |
0.79 |
0.84 |
— | 0.63 |
0.99 |
chrX | 91627096 | 91633253 | chrX:91627096-91633253:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.88 |
0.72 |
0.82 |
0.91 |
0.75 |
0.77 |
0.84 |
— | 0.48 |
0.85 |
0.97 |
chrX | 91752800 | 91758828 | chrX:91752800-91758828:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.01 |
0.62 |
0.47 |
0.05 |
0.74 |
0.74 |
0.77 |
0.95 |
0.35 |
0.71 |
0.99 |
chrX | 91819650 | 91825702 | chrX:91819650-91825702:-:L1PA3:REF | L1PA3 | REF | full-length | PCDH11X | 0.02 |
0.8 |
0.77 |
0.89 |
0.7 |
0.8 |
0.85 |
0.81 |
0.96 |
0.64 |
0.79 |
0.98 |
chrX | 92215061 | 92221212 | chrX:92215061-92221212:+:L1PA3:REF | L1PA3 | REF | full-length | PCDH11X | 0.02 |
0.8 |
0.64 |
0.9 |
0.86 |
0.76 |
0.74 |
0.86 |
0.89 |
0.53 |
0.75 |
0.92 |
chrX | 92254241 | 92256469 | chrX:92254241-92256469:-:L1HS:REF | L1HS | REF | 3prime-truncated | PCDH11X | 0.03 |
0.86 |
0.59 |
0.91 |
0.91 |
0.72 |
0.78 |
0.82 |
0.94 |
0.38 |
0.74 |
0.95 |
chrX | 93060238 | 93066331 | chrX:93060238-93066331:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.52 |
0.46 |
0.8 |
0.91 |
0.58 |
0.6 |
0.67 |
0.92 |
0.55 |
0.68 |
0.97 |
chrX | 93627330 | 93633481 | chrX:93627330-93633481:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.34 |
0.16 |
0.77 |
— | 0.6 |
0.5 |
— | 0.14 |
0.53 |
— |
chrX | 93939741 | 93945900 | chrX:93939741-93945900:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.81 |
0.73 |
0.66 |
0.44 |
0.73 |
— | 0.74 |
0.81 |
0.61 |
0.72 |
0.87 |
chrX | 94862375 | 94868400 | chrX:94862375-94868400:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.01 |
0.57 |
0.38 |
0.42 |
0.62 |
0.22 |
0.67 |
0.97 |
0.34 |
0.67 |
0.97 |
chrX | 96057824 | 96063842 | chrX:96057824-96063842:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.47 |
0.93 |
0.68 |
0.04 |
0.88 |
0.82 |
0.79 |
0.88 |
0.6 |
0.83 |
0.53 |
chrX | 96269391 | 96275726 | chrX:96269391-96275726:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.8 |
0.4 |
0.45 |
0.76 |
0.66 |
0.63 |
0.68 |
0.84 |
0.29 |
0.65 |
0.87 |
chrX | 96427606 | 96430043 | chrX:96427606-96430043:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.64 |
0.03 |
0.47 |
0.95 |
— | 0.73 |
— | 0.72 |
— | — |
chrX | 96597640 | 96603783 | chrX:96597640-96603783:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | 0.77 |
0.46 |
0.89 |
— | — | — | — | 0.44 |
0.81 |
— |
chrX | 97509510 | 97515511 | chrX:97509510-97515511:-:L1PA3:REF | L1PA3 | REF | full-length | DIAPH2 | 0.17 |
0.93 |
0.81 |
0.94 |
0.75 |
0.98 |
0.97 |
0.91 |
0.99 |
0.74 |
0.97 |
0.98 |
chrX | 98300352 | 98306364 | chrX:98300352-98306364:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.09 |
0.72 |
0.5 |
0.9 |
0.7 |
0.75 |
0.81 |
0.96 |
0.39 |
0.76 |
0.96 |
chrX | 98424325 | 98430357 | chrX:98424325-98430357:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
— | 0.82 |
0.64 |
0.91 |
0.82 |
0.69 |
0.84 |
0.94 |
0.65 |
0.78 |
0.97 |
chrX | 98687494 | 98693514 | chrX:98687494-98693514:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | 0.8 |
— | 0.74 |
— | — | — | — | 0.66 |
0.71 |
— |
chrX | 99234633 | 99240760 | chrX:99234633-99240760:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.1 |
0.28 |
0.1 |
0.94 |
0.52 |
0.21 |
0.47 |
— | 0.08 |
0.61 |
0.94 |
chrX | 100236224 | 100236943 | chrX:100236224-100236943:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | 0.4 |
0.12 |
0.23 |
— | 0.27 |
0.43 |
— | 0.17 |
0.52 |
— |