Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 138073442 | 138079552 | chrX:138073442-138079552:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.63 |
0.19 |
0.13 |
0.86 |
0.34 |
0.02 |
0.28 |
0.96 |
0.15 |
0.54 |
0.11 |
chrX | 138105302 | 138111440 | chrX:138105302-138111440:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.15 |
0.26 |
0.07 |
0.86 |
0.32 |
0.02 |
0.4 |
0.84 |
0.07 |
0.38 |
0.41 |
chrX | 138778307 | 138784350 | chrX:138778307-138784350:+:L1PA3:REF | L1PA3 | REF | full-length | FGF13 | 0.11 |
0.56 |
0.56 |
0.43 |
0.34 |
0.58 |
0.44 |
0.54 |
0.6 |
0.5 |
0.59 |
0.62 |
chrX | 139259549 | 139265701 | chrX:139259549-139265701:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.09 |
0.7 |
0.28 |
0.14 |
0.9 |
0.34 |
0.33 |
0.35 |
0.89 |
0.08 |
0.45 |
0.12 |
chrX | 139989004 | 139995163 | chrX:139989004-139995163:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.87 |
0.86 |
0.31 |
0.82 |
0.87 |
0.45 |
0.79 |
— | 0.74 |
0.86 |
0.9 |
chrX | 140000618 | 140002873 | chrX:140000618-140002873:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.75 |
0.48 |
0.12 |
0.85 |
0.3 |
0.09 |
0.44 |
— | 0.28 |
0.23 |
0.48 |
chrX | 140632924 | 140639082 | chrX:140632924-140639082:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.2 |
0.49 |
0.0 |
0.88 |
0.64 |
0.01 |
0.63 |
0.89 |
0.12 |
0.7 |
0.03 |
chrX | 142338123 | 142344150 | chrX:142338123-142344150:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.94 |
0.79 |
0.81 |
0.7 |
0.79 |
0.49 |
0.7 |
0.96 |
0.5 |
0.63 |
0.98 |
chrX | 142385590 | 142391622 | chrX:142385590-142391622:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.08 |
0.9 |
0.76 |
0.81 |
0.07 |
0.79 |
0.69 |
0.71 |
0.91 |
0.62 |
0.74 |
0.96 |
chrX | 142477849 | 142483853 | chrX:142477849-142483853:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.95 |
0.81 |
0.87 |
0.26 |
0.88 |
0.81 |
0.75 |
0.97 |
0.62 |
0.89 |
0.91 |
chrX | 146118862 | 146123734 | chrX:146118862-146123734:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.08 |
0.28 |
0.21 |
0.92 |
0.45 |
0.64 |
0.65 |
0.8 |
0.02 |
0.64 |
0.22 |
chrX | 146227925 | 146234095 | chrX:146227925-146234095:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.23 |
0.42 |
0.06 |
0.79 |
0.41 |
0.17 |
0.38 |
0.75 |
0.14 |
0.43 |
0.11 |
chrX | 147142048 | 147148161 | chrX:147142048-147148161:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.01 |
0.31 |
0.13 |
0.87 |
0.63 |
0.34 |
0.65 |
0.95 |
0.14 |
0.64 |
0.69 |
chrX | 147653734 | 147659767 | chrX:147653734-147659767:+:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.67 |
0.78 |
0.72 |
0.1 |
0.63 |
0.63 |
0.75 |
0.77 |
0.66 |
0.83 |
0.9 |
chrX | 148123449 | 148129475 | chrX:148123449-148129475:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.88 |
0.7 |
0.77 |
0.09 |
0.84 |
0.91 |
0.72 |
0.91 |
0.36 |
0.82 |
0.93 |
chrX | 148346941 | 148353036 | chrX:148346941-148353036:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.13 |
0.62 |
0.14 |
0.82 |
0.67 |
0.15 |
0.67 |
0.94 |
0.43 |
0.7 |
0.72 |
chrX | 148775864 | 148782141 | chrX:148775864-148782141:-:L1PA7:REF | L1PA7 | REF | full-length | AFF2 | 0.0 |
0.26 |
0.49 |
0.04 |
0.87 |
0.65 |
0.03 |
0.38 |
0.89 |
0.42 |
0.28 |
0.52 |
chrX | 149178166 | 149184185 | chrX:149178166-149184185:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.8 |
0.83 |
0.5 |
0.13 |
0.74 |
0.74 |
0.62 |
0.51 |
0.67 |
0.71 |
— |
chrX | 149334009 | 149340027 | chrX:149334009-149340027:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.89 |
0.79 |
0.59 |
0.63 |
0.83 |
0.76 |
0.67 |
0.91 |
0.7 |
0.73 |
0.83 |
chrX | 149435837 | 149441830 | chrX:149435837-149441830:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.68 |
— | 0.51 |
0.75 |
0.6 |
— | 0.97 |
0.43 |
0.71 |
0.8 |
chrX | 150417926 | 150421451 | chrX:150417926-150421451:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | MAMLD1 | 0.14 |
0.75 |
0.81 |
0.97 |
0.16 |
0.97 |
0.94 |
0.83 |
— | 0.84 |
0.98 |
0.98 |
chrX | 151330320 | 151336351 | chrX:151330320-151336351:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.6 |
0.73 |
0.55 |
0.31 |
0.73 |
0.74 |
0.7 |
0.92 |
0.51 |
0.71 |
0.87 |
chrX | 152235997 | 152242028 | chrX:152235997-152242028:-:L1PA2:REF | L1PA2 | REF | full-length | GABRA3 | 0.9 |
0.58 |
0.74 |
0.97 |
0.31 |
0.7 |
0.41 |
0.71 |
0.9 |
0.53 |
0.74 |
0.78 |
chrX | 152289516 | 152295834 | chrX:152289516-152295834:-:L1PA6:REF | L1PA6 | REF | full-length | GABRA3 | — | — | 0.1 |
— | 0.96 |
— | 0.04 |
— | — | 0.01 |
0.17 |
— |
chrX | 152544525 | 152550550 | chrX:152544525-152550550:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.85 |
0.65 |
0.81 |
0.71 |
0.89 |
0.75 |
0.66 |
0.75 |
0.88 |
— | 0.83 |
0.87 |
chrX | 152581914 | 152588056 | chrX:152581914-152588056:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.68 |
0.2 |
0.6 |
0.78 |
0.84 |
0.62 |
0.36 |
0.71 |
0.89 |
0.28 |
0.65 |
0.59 |
chrX | 152610420 | 152612729 | chrX:152610420-152612729:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.88 |
0.83 |
0.61 |
0.56 |
0.5 |
0.6 |
0.49 |
0.63 |
0.9 |
0.19 |
0.64 |
0.72 |
chrX | 152835297 | 152841440 | chrX:152835297-152841440:-:L1PA6:REF | L1PA6 | REF | full-length | NSDHL | 0.92 |
0.96 |
0.69 |
0.97 |
0.91 |
0.84 |
0.95 |
0.79 |
— | 0.81 |
0.97 |
0.98 |
chrX | 155162775 | 155163333 | chrX:155162775-155163333:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.66 |
0.92 |
0.55 |
0.54 |
0.86 |
0.72 |
0.32 |
0.71 |
0.96 |
0.52 |
0.83 |
0.98 |
chrX | 155197626 | 155203769 | chrX:155197626-155203769:+:L1PA3:REF | L1PA3 | REF | full-length | VBP1 | 0.48 |
0.93 |
0.56 |
0.7 |
0.88 |
0.64 |
0.8 |
0.66 |
0.91 |
0.65 |
0.78 |
0.96 |
chrX | 155299575 | 155305601 | chrX:155299575-155305601:-:L1PA2:REF | L1PA2 | REF | full-length | CLIC2 | 0.98 |
0.97 |
0.8 |
0.72 |
0.33 |
0.82 |
0.89 |
0.74 |
0.94 |
0.77 |
0.93 |
0.97 |
chrX | 155421974 | 155428112 | chrX:155421974-155428112:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.61 |
0.95 |
0.62 |
0.8 |
0.86 |
0.85 |
0.93 |
0.8 |
0.96 |
0.67 |
0.96 |
0.98 |
chrX | 155516016 | 155522048 | chrX:155516016-155522048:-:L1HS:REF | L1HS | REF | full-length | TMLHE | 0.97 |
0.98 |
0.89 |
0.98 |
0.2 |
0.98 |
0.99 |
0.84 |
0.96 |
0.9 |
0.98 |
0.98 |
chrX | 155655706 | 155658058 | chrX:155655706-155658058:-:L1P3:REF | L1P3 | REF | 3prime-truncated | SPRY3 | 0.22 |
0.5 |
0.45 |
— | 0.51 |
0.41 |
0.45 |
0.4 |
— | 0.55 |
0.46 |
0.47 |
chrY | 3443550 | 3449565 | chrY:3443550-3449565:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.61 |
0.79 |
0.84 |
— | 0.95 |
— | 0.86 |
— |
chrY | 4948913 | 4954938 | chrY:4948913-4954938:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.39 |
0.81 |
0.77 |
— | 0.94 |
— | 0.71 |
— |
chrY | 4973238 | 4979397 | chrY:4973238-4979397:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.73 |
0.61 |
0.35 |
— | — | — | 0.58 |
— |
chrY | 5041086 | 5047139 | chrY:5041086-5047139:-:L1PA3:REF | L1PA3 | REF | full-length | PCDH11Y | — | — | — | — | 0.23 |
0.8 |
0.82 |
— | 0.94 |
— | 0.87 |
— |
chrY | 5606144 | 5612199 | chrY:5606144-5612199:-:L1HS:REF | L1HS | REF | full-length | PCDH11Y | — | — | — | — | 0.42 |
0.79 |
0.72 |
— | 0.97 |
— | 0.83 |
— |
chrY | 5998661 | 5999485 | chrY:5998661-5999485:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | 0.72 |
0.06 |
0.01 |
— | 0.76 |
— | 0.05 |
— |
chrY | 6626784 | 6632798 | chrY:6626784-6632798:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.53 |
— | 0.87 |
0.55 |
0.35 |
— | 0.91 |
0.46 |
0.71 |
— |
chrY | 6852433 | 6858448 | chrY:6852433-6858448:+:L1PA3:REF | L1PA3 | REF | full-length | AMELY | — | — | — | — | 0.92 |
0.73 |
0.74 |
— | 0.93 |
— | 0.72 |
— |
chrY | 7154111 | 7160133 | chrY:7154111-7160133:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.44 |
0.81 |
0.93 |
— | 0.9 |
— | 0.83 |
— |
chrY | 7249559 | 7255517 | chrY:7249559-7255517:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.46 |
0.68 |
0.73 |
— | 0.69 |
— | 0.74 |
— |
chrY | 7428008 | 7433810 | chrY:7428008-7433810:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | 0.95 |
— | 0.87 |
— | — | — | 0.98 |
— |
chrY | 8943046 | 8949182 | chrY:8943046-8949182:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | 0.78 |
0.33 |
0.12 |
— | 0.69 |
— | 0.1 |
— |
chrY | 9589714 | 9590560 | chrY:9589714-9590560:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | — | — | — | 0.34 |
0.66 |
0.79 |
— | 0.92 |
— | 0.64 |
— |
chrY | 9941130 | 9947151 | chrY:9941130-9947151:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.72 |
0.62 |
0.74 |
— | 0.9 |
— | 0.76 |
— |
chrY | 9961614 | 9967750 | chrY:9961614-9967750:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.88 |
0.69 |
0.73 |
— | 0.86 |
— | 0.72 |
— |
chrY | 11992980 | 11994466 | chrY:11992980-11994466:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | — | — | — | — | 0.75 |
0.63 |
0.76 |
— | 0.83 |
— | 0.71 |
— |