Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 158511108 | 158517123 | chr3:158511108-158517123:-:L1PA3:REF | L1PA3 | REF | full-length | RSRC1 | — | 0.91 |
0.96 |
0.88 |
0.8 |
0.91 |
0.88 |
0.88 |
0.98 |
0.96 |
0.97 |
0.87 |
chr3 | 158634523 | 158640540 | chr3:158634523-158640540:+:L1PA2:REF | L1PA2 | REF | full-length | GFM1 | 0.67 |
0.82 |
0.84 |
0.69 |
0.2 |
0.46 |
0.39 |
0.76 |
0.58 |
0.85 |
0.61 |
0.94 |
chr3 | 159095379 | 159101394 | chr3:159095379-159101394:-:L1HS:REF | L1HS | REF | full-length | IQCJ | 0.01 |
0.89 |
0.95 |
0.7 |
0.17 |
0.86 |
0.83 |
0.84 |
0.92 |
0.81 |
0.86 |
0.98 |
chr3 | 159392310 | 159398352 | chr3:159392310-159398352:-:L1PA3:REF | L1PA3 | REF | full-length | IQCJ-SCHIP1 | 0.04 |
0.75 |
0.69 |
0.34 |
0.81 |
0.66 |
0.44 |
0.65 |
0.92 |
0.43 |
0.58 |
0.94 |
chr3 | 159505478 | 159511616 | chr3:159505478-159511616:-:L1PA5:REF | L1PA5 | REF | full-length | IQCJ-SCHIP1 | 0.01 |
0.64 |
0.75 |
0.35 |
0.82 |
0.8 |
0.49 |
0.67 |
0.93 |
0.63 |
0.63 |
0.95 |
chr3 | 161706794 | 161713195 | chr3:161706794-161713195:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.82 |
0.0 |
0.04 |
0.67 |
0.14 |
0.07 |
0.0 |
0.84 |
0.86 |
0.03 |
0.92 |
chr3 | 162405866 | 162411893 | chr3:162405866-162411893:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.46 |
0.78 |
0.63 |
0.13 |
0.89 |
0.82 |
0.9 |
0.88 |
0.14 |
0.87 |
0.94 |
chr3 | 163236941 | 163242962 | chr3:163236941-163242962:+:L1HS:REF | L1HS | REF | full-length | LINC01192 | 0.02 |
0.84 |
0.64 |
0.62 |
0.09 |
0.76 |
0.59 |
0.67 |
0.74 |
0.45 |
0.62 |
0.91 |
chr3 | 164291525 | 164296426 | chr3:164291525-164296426:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.19 |
0.97 |
0.87 |
0.85 |
0.45 |
0.85 |
0.9 |
0.85 |
0.96 |
0.93 |
0.89 |
0.98 |
chr3 | 164786818 | 164788008 | chr3:164786818-164788008:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC01324 | 0.01 |
0.76 |
0.55 |
0.68 |
0.81 |
0.44 |
0.52 |
0.55 |
0.93 |
0.79 |
0.65 |
0.96 |
chr3 | 165572331 | 165578354 | chr3:165572331-165578354:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.72 |
0.79 |
0.74 |
0.07 |
0.67 |
0.58 |
0.79 |
0.94 |
— | 0.76 |
0.98 |
chr3 | 165655169 | 165657114 | chr3:165655169-165657114:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.34 |
0.39 |
0.22 |
0.74 |
0.22 |
0.2 |
0.74 |
— | 0.65 |
0.27 |
— |
chr3 | 166021102 | 166027124 | chr3:166021102-166027124:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.88 |
0.73 |
0.86 |
0.82 |
0.64 |
0.67 |
— | — | 0.69 |
0.78 |
0.93 |
chr3 | 166617451 | 166623581 | chr3:166617451-166623581:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.78 |
0.28 |
0.79 |
0.76 |
0.47 |
0.02 |
0.66 |
0.98 |
0.54 |
0.55 |
0.99 |
chr3 | 167129352 | 167135528 | chr3:167129352-167135528:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.66 |
0.63 |
0.5 |
0.87 |
0.54 |
0.4 |
0.61 |
0.93 |
0.86 |
0.59 |
0.98 |
chr3 | 167275267 | 167281266 | chr3:167275267-167281266:+:L1PA3:REF | L1PA3 | REF | full-length | ZBBX | 0.04 |
0.86 |
0.81 |
0.76 |
0.94 |
0.73 |
0.83 |
0.82 |
— | 0.9 |
0.8 |
0.96 |
chr3 | 168128296 | 168134440 | chr3:168128296-168134440:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.47 |
0.72 |
0.73 |
0.2 |
0.85 |
0.48 |
0.07 |
0.52 |
0.84 |
0.77 |
0.74 |
0.94 |
chr3 | 168772345 | 168772668 | chr3:168772345-168772668:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | EGFEM1P | 0.02 |
0.09 |
0.8 |
0.2 |
0.89 |
0.66 |
0.07 |
0.83 |
0.95 |
0.7 |
0.91 |
0.72 |
chr3 | 169413059 | 169413467 | chr3:169413059-169413467:+:L1P3:REF | L1P3 | REF | 3prime-truncated | MECOM | — | 0.79 |
0.96 |
0.82 |
0.92 |
0.16 |
0.11 |
0.74 |
0.91 |
0.96 |
0.85 |
0.62 |
chr3 | 169552175 | 169552177 | chr3:169552175-169552177:+:L1HS:NONREF | L1HS | KNR | — | MECOM | — | 0.91 |
0.9 |
— | — | 0.73 |
— | — | — | 0.9 |
— | 0.79 |
chr3 | 169567925 | 169568732 | chr3:169567925-169568732:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MECOM | 0.0 |
— | — | 0.86 |
— | 0.29 |
0.66 |
— | — | — | 0.6 |
0.45 |
chr3 | 169679487 | 169685517 | chr3:169679487-169685517:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.39 |
0.91 |
0.92 |
0.89 |
0.1 |
0.83 |
0.94 |
0.92 |
0.85 |
0.93 |
0.95 |
0.93 |
chr3 | 170662387 | 170668526 | chr3:170662387-170668526:-:L1PA4:REF | L1PA4 | REF | full-length | SLC7A14-AS1 | 0.79 |
0.96 |
0.88 |
0.61 |
0.95 |
0.89 |
0.57 |
0.94 |
0.97 |
0.68 |
0.94 |
0.96 |
chr3 | 170932917 | 170939072 | chr3:170932917-170939072:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.14 |
0.93 |
0.83 |
0.51 |
0.88 |
0.8 |
0.71 |
0.87 |
0.93 |
0.73 |
0.88 |
0.97 |
chr3 | 174259685 | 174265694 | chr3:174259685-174265694:-:L1PA2:REF | L1PA2 | REF | full-length | NLGN1 | 0.02 |
0.91 |
0.97 |
0.72 |
0.14 |
0.97 |
0.51 |
0.99 |
0.94 |
0.96 |
0.97 |
0.93 |
chr3 | 174605174 | 174611325 | chr3:174605174-174611325:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | 0.52 |
0.82 |
0.91 |
0.67 |
0.96 |
— | 0.86 |
0.94 |
0.95 |
chr3 | 175781710 | 175787737 | chr3:175781710-175787737:-:L1PA2:REF | L1PA2 | REF | full-length | NAALADL2 | 0.03 |
0.98 |
0.93 |
0.8 |
0.13 |
0.97 |
0.84 |
0.97 |
0.96 |
0.94 |
0.98 |
0.98 |
chr3 | 176016123 | 176022184 | chr3:176016123-176022184:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.87 |
0.71 |
0.57 |
0.44 |
0.88 |
0.56 |
0.92 |
0.95 |
0.04 |
0.87 |
0.9 |
chr3 | 176705531 | 176711710 | chr3:176705531-176711710:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.62 |
0.65 |
0.33 |
0.88 |
0.65 |
0.61 |
0.61 |
0.94 |
0.68 |
0.7 |
0.98 |
chr3 | 177388770 | 177394751 | chr3:177388770-177394751:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.91 |
0.57 |
0.94 |
0.47 |
0.1 |
0.94 |
0.92 |
0.85 |
— | 0.02 |
0.94 |
1.0 |
chr3 | 177659339 | 177665319 | chr3:177659339-177665319:-:L1PA4:REF | L1PA4 | REF | full-length | LINC00578 | 0.83 |
0.12 |
0.95 |
— | 0.9 |
0.93 |
0.87 |
0.98 |
0.92 |
0.93 |
0.97 |
0.02 |
chr3 | 178859948 | 178865979 | chr3:178859948-178865979:+:L1PA2:REF | L1PA2 | REF | full-length | KCNMB2-AS1 | 0.01 |
0.19 |
0.81 |
0.41 |
0.13 |
0.76 |
0.55 |
0.76 |
0.89 |
0.06 |
0.94 |
0.01 |
chr3 | 180367353 | 180373522 | chr3:180367353-180373522:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.79 |
0.2 |
0.15 |
0.81 |
0.48 |
0.05 |
0.74 |
0.96 |
0.1 |
0.52 |
0.63 |
chr3 | 180448471 | 180452905 | chr3:180448471-180452905:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.93 |
0.78 |
0.59 |
0.85 |
0.74 |
0.77 |
0.88 |
0.92 |
0.61 |
0.75 |
0.84 |
chr3 | 181041413 | 181046904 | chr3:181041413-181046904:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | SOX2-OT | 0.01 |
0.57 |
0.72 |
0.42 |
0.88 |
0.73 |
0.45 |
0.83 |
0.97 |
0.85 |
0.81 |
0.94 |
chr3 | 182426092 | 182432110 | chr3:182426092-182432110:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.15 |
0.1 |
0.94 |
0.7 |
0.13 |
0.75 |
0.81 |
0.83 |
0.9 |
0.2 |
0.75 |
0.98 |
chr3 | 186654351 | 186654353 | chr3:186654351-186654353:+:L1HS:NONREF | L1HS | KNR | — | FETUB | — | — | — | — | 0.43 |
0.92 |
— | — | — | — | 0.91 |
— |
chr3 | 187052299 | 187058423 | chr3:187052299-187058423:-:L1PA6:REF | L1PA6 | REF | full-length | ST6GAL1 | 0.98 |
0.97 |
0.92 |
0.65 |
0.81 |
0.72 |
0.98 |
0.88 |
0.9 |
0.96 |
0.85 |
0.89 |
chr3 | 187412123 | 187418152 | chr3:187412123-187418152:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.29 |
0.85 |
0.76 |
0.05 |
0.88 |
0.26 |
0.74 |
0.73 |
0.03 |
0.82 |
0.27 |
chr3 | 187512728 | 187514886 | chr3:187512728-187514886:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.92 |
0.65 |
0.0 |
0.72 |
0.64 |
0.14 |
0.28 |
— | 0.63 |
0.19 |
0.11 |
chr3 | 187862480 | 187868516 | chr3:187862480-187868516:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.5 |
0.97 |
0.97 |
0.07 |
0.78 |
0.95 |
0.94 |
0.86 |
0.95 |
0.98 |
0.98 |
chr3 | 187890220 | 187896214 | chr3:187890220-187896214:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.83 |
0.94 |
0.96 |
0.07 |
0.96 |
0.42 |
0.94 |
0.83 |
0.64 |
0.96 |
0.02 |
chr3 | 188372709 | 188378861 | chr3:188372709-188378861:-:L1PA4:REF | L1PA4 | REF | full-length | LPP | 0.01 |
0.96 |
0.96 |
0.98 |
0.93 |
0.97 |
0.97 |
0.99 |
0.97 |
0.95 |
0.99 |
0.97 |
chr3 | 190964647 | 190965526 | chr3:190964647-190965526:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.04 |
0.93 |
0.96 |
0.93 |
0.43 |
0.8 |
0.67 |
0.85 |
0.65 |
0.96 |
0.93 |
0.98 |
chr3 | 192149315 | 192155328 | chr3:192149315-192155328:-:L1PA2:REF | L1PA2 | REF | full-length | FGF12 | 0.01 |
0.01 |
0.05 |
0.48 |
— | 0.07 |
0.34 |
0.11 |
0.47 |
0.0 |
— | 0.49 |
chr3 | 192739213 | 192745242 | chr3:192739213-192745242:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.84 |
0.9 |
0.63 |
0.07 |
0.68 |
0.8 |
0.79 |
0.91 |
0.83 |
0.81 |
0.9 |
chr3 | 192961457 | 192965642 | chr3:192961457-192965642:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.2 |
0.97 |
0.52 |
0.85 |
0.91 |
0.43 |
0.92 |
0.97 |
— | 0.84 |
0.97 |
chr3 | 195087672 | 195093677 | chr3:195087672-195093677:+:L1PA2:REF | L1PA2 | REF | full-length | XXYLT1 | 0.87 |
0.97 |
0.98 |
0.99 |
0.29 |
0.76 |
0.97 |
0.78 |
0.35 |
0.82 |
0.9 |
0.98 |
chr4 | 4953897 | 4959919 | chr4:4953897-4959919:-:L1PA2:REF | L1PA2 | REF | full-length | LOC101928306 | 0.03 |
0.98 |
0.96 |
0.87 |
0.06 |
0.83 |
0.83 |
0.91 |
0.89 |
0.71 |
0.83 |
0.97 |
chr4 | 5241574 | 5247720 | chr4:5241574-5247720:-:L1PA4:REF | L1PA4 | REF | full-length | STK32B | 0.01 |
0.53 |
0.87 |
0.41 |
0.86 |
0.91 |
0.61 |
0.86 |
0.94 |
0.29 |
0.97 |
0.73 |