Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 50223304 | 50229465 | chr6:50223304-50229465:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
— | 0.32 |
0.05 |
0.8 |
0.27 |
0.08 |
0.43 |
0.89 |
0.02 |
0.3 |
0.32 |
chr6 | 50343727 | 50349871 | chr6:50343727-50349871:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.24 |
0.35 |
0.05 |
0.89 |
0.4 |
0.17 |
0.47 |
0.84 |
0.19 |
0.37 |
0.48 |
chr6 | 50619864 | 50626003 | chr6:50619864-50626003:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.66 |
0.78 |
0.51 |
0.88 |
0.74 |
0.7 |
0.76 |
0.95 |
0.24 |
0.78 |
0.91 |
chr6 | 51121435 | 51127584 | chr6:51121435-51127584:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.79 |
— | 0.79 |
0.59 |
0.68 |
— | — | 0.27 |
0.39 |
0.6 |
chr6 | 51187669 | 51193819 | chr6:51187669-51193819:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.63 |
0.94 |
0.73 |
0.17 |
0.86 |
0.65 |
0.77 |
0.63 |
0.93 |
0.38 |
0.69 |
0.5 |
chr6 | 51224349 | 51230496 | chr6:51224349-51230496:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.6 |
0.86 |
0.66 |
— | 0.8 |
0.55 |
0.84 |
0.52 |
0.84 |
0.43 |
0.44 |
0.49 |
chr6 | 51874783 | 51880802 | chr6:51874783-51880802:+:L1HS:REF | L1HS | REF | full-length | PKHD1 | 0.01 |
0.28 |
0.93 |
0.62 |
0.13 |
0.63 |
0.66 |
— | 0.31 |
— | — | 0.92 |
chr6 | 51895656 | 51901683 | chr6:51895656-51901683:+:L1PA3:REF | L1PA3 | REF | full-length | PKHD1 | 0.02 |
0.93 |
0.77 |
— | 0.4 |
0.68 |
0.67 |
0.64 |
0.92 |
0.57 |
0.62 |
0.74 |
chr6 | 52090943 | 52097103 | chr6:52090943-52097103:-:L1PA3:REF | L1PA3 | REF | full-length | PKHD1 | 0.01 |
0.94 |
0.89 |
0.43 |
0.92 |
0.7 |
0.73 |
0.71 |
0.94 |
0.65 |
0.72 |
0.79 |
chr6 | 52771227 | 52777614 | chr6:52771227-52777614:-:L1PA2:REF | L1PA2 | REF | full-length | GSTA2 | 0.0 |
0.89 |
0.86 |
0.1 |
0.79 |
0.54 |
0.39 |
0.64 |
0.85 |
0.61 |
0.55 |
0.95 |
chr6 | 53400050 | 53406226 | chr6:53400050-53406226:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.24 |
0.95 |
0.97 |
0.81 |
0.9 |
0.83 |
0.75 |
0.77 |
0.94 |
0.93 |
0.84 |
0.95 |
chr6 | 53774041 | 53780171 | chr6:53774041-53780171:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.94 |
0.96 |
— | 0.94 |
0.92 |
0.94 |
0.92 |
0.98 |
0.92 |
0.95 |
0.98 |
chr6 | 54961429 | 54967437 | chr6:54961429-54967437:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.94 |
0.89 |
0.93 |
0.15 |
0.81 |
0.77 |
0.91 |
0.95 |
0.81 |
0.96 |
0.98 |
chr6 | 55123170 | 55127526 | chr6:55123170-55127526:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | HCRTR2 | 0.01 |
0.9 |
0.51 |
0.11 |
0.84 |
0.23 |
0.01 |
0.5 |
0.83 |
0.2 |
0.77 |
0.96 |
chr6 | 55363436 | 55369467 | chr6:55363436-55369467:-:L1PA2:REF | L1PA2 | REF | full-length | GFRAL | 0.01 |
0.9 |
0.84 |
0.68 |
0.13 |
0.76 |
0.81 |
0.85 |
0.96 |
0.83 |
0.9 |
0.86 |
chr6 | 55684657 | 55690687 | chr6:55684657-55690687:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.34 |
0.97 |
0.87 |
0.91 |
0.85 |
0.55 |
0.93 |
0.97 |
0.96 |
0.97 |
0.98 |
chr6 | 56203672 | 56206697 | chr6:56203672-56206697:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | COL21A1 | 0.0 |
0.8 |
0.93 |
0.22 |
0.86 |
0.65 |
0.03 |
0.74 |
0.93 |
0.72 |
0.85 |
0.97 |
chr6 | 56301711 | 56307870 | chr6:56301711-56307870:-:L1PA4:REF | L1PA4 | REF | full-length | COL21A1 | 0.01 |
0.8 |
0.61 |
0.74 |
0.76 |
0.61 |
0.26 |
0.78 |
0.8 |
0.55 |
0.73 |
0.84 |
chr6 | 57334868 | 57340871 | chr6:57334868-57340871:+:L1PA3:REF | L1PA3 | REF | full-length | PRIM2 | 0.97 |
0.97 |
0.97 |
0.98 |
0.95 |
0.99 |
0.97 |
0.98 |
0.95 |
0.97 |
0.98 |
0.94 |
chr6 | 57451781 | 57457923 | chr6:57451781-57457923:-:L1PA4:REF | L1PA4 | REF | full-length | PRIM2 | 0.86 |
0.9 |
0.84 |
0.98 |
0.81 |
0.92 |
0.97 |
0.91 |
0.85 |
0.81 |
0.87 |
0.93 |
chr6 | 57700427 | 57706542 | chr6:57700427-57706542:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.77 |
0.72 |
0.03 |
0.9 |
0.54 |
0.15 |
0.6 |
0.71 |
0.64 |
0.68 |
0.94 |
chr6 | 58226623 | 58232747 | chr6:58226623-58232747:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.29 |
0.45 |
0.17 |
0.74 |
0.45 |
0.21 |
— | — | 0.5 |
0.63 |
0.85 |
chr6 | 58393798 | 58399940 | chr6:58393798-58399940:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.78 |
0.55 |
0.51 |
0.85 |
0.67 |
0.21 |
0.74 |
0.74 |
0.13 |
0.73 |
0.95 |
chr6 | 60344718 | 60350882 | chr6:60344718-60350882:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.52 |
0.78 |
0.23 |
0.92 |
0.55 |
— | 0.64 |
0.93 |
0.51 |
0.59 |
0.85 |
chr6 | 60599849 | 60605969 | chr6:60599849-60605969:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.18 |
0.08 |
0.06 |
0.85 |
0.3 |
0.03 |
0.23 |
0.8 |
0.03 |
0.36 |
0.86 |
chr6 | 60616507 | 60622518 | chr6:60616507-60622518:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.39 |
0.48 |
0.57 |
0.77 |
0.61 |
0.49 |
0.68 |
0.78 |
0.41 |
0.58 |
0.86 |
chr6 | 60629792 | 60635918 | chr6:60629792-60635918:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.12 |
0.07 |
0.07 |
0.69 |
0.27 |
0.17 |
0.35 |
0.77 |
0.05 |
0.27 |
0.75 |
chr6 | 60980953 | 60987074 | chr6:60980953-60987074:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.2 |
0.17 |
0.27 |
0.82 |
0.41 |
0.13 |
— | — | 0.08 |
0.39 |
0.93 |
chr6 | 61047402 | 61053558 | chr6:61047402-61053558:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.2 |
0.05 |
0.16 |
0.71 |
0.44 |
0.03 |
0.51 |
0.85 |
0.02 |
0.4 |
0.92 |
chr6 | 61160548 | 61163754 | chr6:61160548-61163754:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.03 |
0.15 |
0.17 |
0.19 |
0.68 |
0.41 |
0.04 |
0.52 |
0.83 |
0.02 |
0.37 |
0.87 |
chr6 | 62087592 | 62089684 | chr6:62087592-62089684:-:L1P3:REF | L1P3 | REF | 3prime-truncated | KHDRBS2 | 0.0 |
0.09 |
0.31 |
0.06 |
0.84 |
0.16 |
0.01 |
0.22 |
0.8 |
0.03 |
0.11 |
0.95 |
chr6 | 62555076 | 62555453 | chr6:62555076-62555453:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.51 |
0.67 |
0.28 |
0.87 |
0.66 |
0.27 |
0.68 |
0.96 |
0.27 |
0.72 |
0.97 |
chr6 | 62817772 | 62818916 | chr6:62817772-62818916:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.28 |
0.14 |
0.03 |
0.84 |
0.47 |
0.23 |
0.5 |
0.95 |
0.09 |
0.48 |
0.99 |
chr6 | 63052978 | 63054313 | chr6:63052978-63054313:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.0 |
0.14 |
— | 0.26 |
0.48 |
0.47 |
0.01 |
0.49 |
0.81 |
0.22 |
0.46 |
0.89 |
chr6 | 64389760 | 64395796 | chr6:64389760-64395796:+:L1PA2:REF | L1PA2 | REF | full-length | EYS | 0.02 |
0.2 |
0.88 |
0.69 |
0.17 |
0.67 |
0.65 |
0.76 |
0.89 |
0.94 |
0.88 |
0.99 |
chr6 | 64896140 | 64899388 | chr6:64896140-64899388:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | EYS | 0.0 |
0.77 |
0.54 |
0.49 |
0.57 |
0.22 |
0.01 |
0.66 |
0.77 |
0.86 |
0.38 |
0.98 |
chr6 | 66540927 | 66547077 | chr6:66540927-66547077:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
— | 0.37 |
0.12 |
— | 0.32 |
0.14 |
0.25 |
— | 0.37 |
0.21 |
— |
chr6 | 66630834 | 66636983 | chr6:66630834-66636983:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.44 |
0.18 |
0.53 |
0.55 |
0.57 |
0.69 |
0.57 |
0.56 |
0.73 |
0.58 |
chr6 | 67095414 | 67101549 | chr6:67095414-67101549:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.16 |
0.56 |
0.09 |
0.09 |
0.26 |
0.14 |
0.03 |
0.22 |
0.61 |
0.12 |
0.44 |
0.63 |
chr6 | 68283873 | 68290045 | chr6:68283873-68290045:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02549 | 0.29 |
0.77 |
0.45 |
0.22 |
0.85 |
0.54 |
0.18 |
0.57 |
0.79 |
0.47 |
0.45 |
0.97 |
chr6 | 69439539 | 69445568 | chr6:69439539-69445568:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.53 |
0.68 |
0.6 |
0.83 |
0.71 |
0.31 |
0.73 |
0.85 |
0.65 |
0.66 |
0.96 |
chr6 | 69495362 | 69500000 | chr6:69495362-69500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.45 |
0.66 |
0.3 |
0.58 |
0.6 |
0.36 |
0.62 |
0.93 |
0.69 |
0.69 |
0.97 |
chr6 | 69515143 | 69521169 | chr6:69515143-69521169:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.76 |
0.65 |
0.57 |
0.24 |
0.68 |
0.45 |
0.72 |
0.84 |
0.34 |
0.75 |
0.93 |
chr6 | 70010347 | 70016552 | chr6:70010347-70016552:+:L1HS:REF | L1HS | REF | full-length | COL19A1 | 0.02 |
0.63 |
0.94 |
0.63 |
0.09 |
0.87 |
0.8 |
0.83 |
0.95 |
0.92 |
0.8 |
0.98 |
chr6 | 70317563 | 70323719 | chr6:70317563-70323719:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.62 |
0.36 |
0.96 |
0.49 |
0.9 |
0.78 |
0.71 |
0.75 |
0.96 |
0.92 |
0.81 |
0.83 |
chr6 | 70914791 | 70920557 | chr6:70914791-70920557:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | B3GAT2 | 0.01 |
0.06 |
0.84 |
0.05 |
0.81 |
0.42 |
0.02 |
0.49 |
0.82 |
0.72 |
0.22 |
0.94 |
chr6 | 70944092 | 70950217 | chr6:70944092-70950217:+:L1PA3:REF | L1PA3 | REF | full-length | B3GAT2 | 0.02 |
0.74 |
0.92 |
0.7 |
0.93 |
0.76 |
0.72 |
0.83 |
0.93 |
0.94 |
0.83 |
0.98 |
chr6 | 71270514 | 71276665 | chr6:71270514-71276665:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.83 |
0.96 |
0.88 |
0.91 |
0.94 |
— | 0.96 |
0.98 |
0.92 |
0.96 |
0.97 |
chr6 | 72122505 | 72126122 | chr6:72122505-72126122:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | RIMS1 | 0.0 |
0.12 |
0.52 |
0.07 |
0.73 |
0.39 |
0.03 |
0.71 |
0.86 |
0.24 |
0.6 |
0.73 |
chr6 | 72469432 | 72475586 | chr6:72469432-72475586:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.9 |
0.32 |
0.85 |
0.51 |
0.89 |
0.95 |
0.39 |
0.95 |
0.96 |
0.81 |
0.92 |
0.84 |