Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 152078502 | 152083797 | chr6:152078502-152083797:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | ESR1 | — | — | — | — | — | 0.57 |
0.09 |
— | — | 0.41 |
0.58 |
0.79 |
chr6 | 152608998 | 152615129 | chr6:152608998-152615129:+:L1PA6:REF | L1PA6 | REF | full-length | SYNE1 | 0.03 |
0.17 |
0.88 |
0.91 |
0.86 |
0.93 |
0.21 |
0.96 |
0.9 |
0.6 |
0.89 |
0.92 |
chr6 | 152712429 | 152712656 | chr6:152712429-152712656:-:L1HS:REF | L1HS | REF | 3prime-truncated | MYCT1 | — | 0.93 |
— | — | 0.94 |
0.86 |
0.57 |
0.96 |
— | — | 0.94 |
— |
chr6 | 156034135 | 156040165 | chr6:156034135-156040165:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.75 |
0.69 |
0.43 |
0.87 |
0.76 |
0.76 |
0.82 |
0.95 |
0.77 |
0.86 |
0.74 |
chr6 | 156324980 | 156331010 | chr6:156324980-156331010:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.72 |
0.28 |
0.87 |
0.8 |
0.85 |
0.96 |
0.92 |
0.84 |
0.92 |
chr6 | 156361254 | 156367276 | chr6:156361254-156367276:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.81 |
0.78 |
0.63 |
0.86 |
0.79 |
0.76 |
0.81 |
0.92 |
0.91 |
0.82 |
0.84 |
chr6 | 157547703 | 157547705 | chr6:157547703-157547705:-:L1HS:NONREF | L1HS | KNR | — | ZDHHC14 | 0.96 |
0.96 |
— | 0.96 |
0.17 |
0.96 |
0.98 |
0.94 |
0.9 |
— | 0.93 |
0.98 |
chr6 | 158178477 | 158184036 | chr6:158178477-158184036:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | GTF2H5 | 0.83 |
0.85 |
0.93 |
0.97 |
0.93 |
0.97 |
0.66 |
0.99 |
0.96 |
0.84 |
0.98 |
0.97 |
chr6 | 159670614 | 159676755 | chr6:159670614-159676755:+:L1PA5:REF | L1PA5 | REF | full-length | SOD2 | 0.93 |
0.97 |
0.94 |
0.98 |
0.83 |
0.97 |
0.97 |
0.96 |
0.97 |
0.93 |
0.8 |
0.97 |
chr6 | 160564531 | 160570646 | chr6:160564531-160570646:+:L1PA5:REF | L1PA5 | REF | full-length | LPA | 0.02 |
0.06 |
0.57 |
— | 0.84 |
0.39 |
0.28 |
0.49 |
0.81 |
0.06 |
0.45 |
— |
chr6 | 160570644 | 160572338 | chr6:160570644-160572338:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LPA | — | — | 0.69 |
— | — | 0.82 |
— | — | — | — | 0.79 |
— |
chr6 | 160679719 | 160685751 | chr6:160679719-160685751:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.15 |
0.04 |
0.89 |
0.34 |
0.14 |
0.76 |
0.91 |
0.77 |
0.92 |
0.65 |
0.78 |
0.89 |
chr6 | 162838592 | 162844620 | chr6:162838592-162844620:-:L1PA2:REF | L1PA2 | REF | full-length | PACRG | 0.02 |
0.92 |
0.97 |
0.8 |
0.85 |
0.91 |
0.89 |
0.84 |
0.98 |
0.97 |
0.89 |
0.97 |
chr6 | 162989737 | 162995762 | chr6:162989737-162995762:-:L1PA2:REF | L1PA2 | REF | full-length | PACRG | 0.01 |
0.93 |
0.94 |
0.47 |
0.68 |
0.91 |
0.87 |
0.85 |
0.96 |
0.93 |
0.92 |
0.98 |
chr6 | 164702727 | 164708899 | chr6:164702727-164708899:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.03 |
0.62 |
0.2 |
0.82 |
0.53 |
0.17 |
0.48 |
0.89 |
0.03 |
0.63 |
0.31 |
chr6 | 164781960 | 164787983 | chr6:164781960-164787983:-:L1PA2:REF | L1PA2 | REF | full-length | MEAT6 | 0.02 |
0.02 |
0.81 |
0.21 |
0.46 |
0.58 |
0.54 |
0.67 |
0.91 |
0.25 |
0.66 |
0.7 |
chr6 | 166788874 | 166795015 | chr6:166788874-166795015:+:L1PA4:REF | L1PA4 | REF | full-length | RPS6KA2 | 0.44 |
0.02 |
0.92 |
0.53 |
0.92 |
0.83 |
0.88 |
0.89 |
0.97 |
0.79 |
0.89 |
0.94 |
chr6 | 166884811 | 166890997 | chr6:166884811-166890997:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.48 |
— | 0.92 |
0.81 |
0.89 |
0.81 |
0.96 |
0.78 |
0.92 |
0.89 |
0.76 |
0.93 |
chr7 | 2743552 | 2749674 | chr7:2743552-2749674:+:L1PA4:REF | L1PA4 | REF | full-length | AMZ1 | 0.89 |
0.9 |
0.99 |
0.98 |
0.86 |
0.94 |
0.93 |
0.96 |
0.94 |
0.92 |
0.93 |
0.98 |
chr7 | 3121545 | 3127690 | chr7:3121545-3127690:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.89 |
0.89 |
0.77 |
0.82 |
0.76 |
0.82 |
0.85 |
0.87 |
0.76 |
0.78 |
0.87 |
chr7 | 7465092 | 7471120 | chr7:7465092-7471120:+:L1HS:REF | L1HS | REF | full-length | COL28A1 | 0.33 |
0.96 |
0.94 |
0.93 |
0.05 |
0.96 |
0.91 |
0.92 |
0.96 |
0.9 |
0.97 |
0.92 |
chr7 | 8239428 | 8245573 | chr7:8239428-8245573:+:L1PA6:REF | L1PA6 | REF | full-length | ICA1 | 0.86 |
0.7 |
— | 0.67 |
— | 0.58 |
0.37 |
0.56 |
— | — | 0.67 |
— |
chr7 | 8298113 | 8304140 | chr7:8298113-8304140:-:L1PA3:REF | L1PA3 | REF | full-length | LOC100505938 | 0.01 |
0.76 |
0.97 |
0.85 |
0.04 |
0.82 |
0.9 |
0.78 |
0.91 |
0.01 |
0.77 |
0.0 |
chr7 | 8351723 | 8353975 | chr7:8351723-8353975:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC100505938 | 0.32 |
0.02 |
0.86 |
0.77 |
0.04 |
0.77 |
0.85 |
0.75 |
0.94 |
0.95 |
0.79 |
0.98 |
chr7 | 8726340 | 8732368 | chr7:8726340-8732368:-:L1PA3:REF | L1PA3 | REF | full-length | NXPH1 | 0.82 |
0.82 |
0.78 |
0.86 |
0.9 |
0.74 |
0.7 |
0.82 |
0.93 |
0.68 |
0.78 |
0.99 |
chr7 | 8847084 | 8847086 | chr7:8847084-8847086:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.8 |
— | — | 0.78 |
— | 0.85 |
— | 0.58 |
0.85 |
— |
chr7 | 9398757 | 9404781 | chr7:9398757-9404781:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.81 |
0.89 |
0.77 |
0.82 |
0.84 |
0.76 |
0.92 |
0.94 |
0.71 |
0.87 |
0.99 |
chr7 | 9436392 | 9442524 | chr7:9436392-9442524:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.2 |
0.31 |
0.29 |
0.86 |
0.5 |
0.28 |
0.6 |
0.85 |
0.3 |
0.59 |
0.96 |
chr7 | 10625076 | 10626565 | chr7:10625076-10626565:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MGC4859 | — | — | 0.46 |
0.05 |
— | 0.3 |
0.05 |
— | — | 0.55 |
0.4 |
— |
chr7 | 10695593 | 10702015 | chr7:10695593-10702015:+:L1PA7:REF | L1PA7 | REF | full-length | MGC4859 | 0.56 |
0.67 |
0.33 |
0.07 |
0.85 |
0.51 |
0.34 |
0.64 |
0.71 |
0.22 |
0.62 |
0.97 |
chr7 | 11389460 | 11392052 | chr7:11389460-11392052:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | THSD7A | 0.01 |
0.65 |
0.44 |
0.12 |
0.81 |
0.29 |
0.08 |
0.27 |
0.97 |
0.82 |
0.56 |
0.94 |
chr7 | 11674973 | 11681399 | chr7:11674973-11681399:+:L1PA7:REF | L1PA7 | REF | full-length | THSD7A | 0.01 |
0.09 |
0.7 |
0.53 |
0.88 |
0.52 |
0.41 |
0.56 |
0.94 |
0.82 |
0.66 |
0.96 |
chr7 | 12497211 | 12500000 | chr7:12497211-12500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC102725191 | 0.01 |
0.07 |
0.78 |
0.01 |
0.03 |
0.84 |
0.01 |
0.87 |
0.88 |
0.01 |
0.87 |
0.6 |
chr7 | 13765644 | 13767081 | chr7:13765644-13767081:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.04 |
0.8 |
0.9 |
0.65 |
0.67 |
0.96 |
0.87 |
0.97 |
0.97 |
0.96 |
0.97 |
0.92 |
chr7 | 14278870 | 14285021 | chr7:14278870-14285021:+:L1PA3:REF | L1PA3 | REF | full-length | DGKB | 0.01 |
0.5 |
0.93 |
0.44 |
0.15 |
0.61 |
0.56 |
0.84 |
0.59 |
0.94 |
0.88 |
0.87 |
chr7 | 14313260 | 14319290 | chr7:14313260-14319290:+:L1PA3:REF | L1PA3 | REF | full-length | DGKB | 0.01 |
0.37 |
0.93 |
0.58 |
0.05 |
0.83 |
0.72 |
0.9 |
0.78 |
0.88 |
0.92 |
0.98 |
chr7 | 14647630 | 14653668 | chr7:14647630-14653668:+:L1PA2:REF | L1PA2 | REF | full-length | DGKB | 0.04 |
0.8 |
0.89 |
0.72 |
0.25 |
0.88 |
0.65 |
0.89 |
0.96 |
0.94 |
0.96 |
0.99 |
chr7 | 15547309 | 15553333 | chr7:15547309-15553333:+:L1PA2:REF | L1PA2 | REF | full-length | AGMO | 0.02 |
0.8 |
0.95 |
0.62 |
0.08 |
0.91 |
0.92 |
0.94 |
0.51 |
0.9 |
0.98 |
0.98 |
chr7 | 15940231 | 15946255 | chr7:15940231-15946255:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.72 |
0.97 |
0.73 |
0.1 |
0.96 |
0.8 |
0.98 |
0.98 |
0.92 |
0.97 |
0.98 |
chr7 | 16216428 | 16222457 | chr7:16216428-16222457:+:L1PA2:REF | L1PA2 | REF | full-length | CRPPA | 0.92 |
0.9 |
0.9 |
0.65 |
0.11 |
0.89 |
0.84 |
0.96 |
0.89 |
0.82 |
0.91 |
0.98 |
chr7 | 16248596 | 16252056 | chr7:16248596-16252056:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CRPPA | 0.93 |
0.96 |
0.95 |
0.24 |
0.91 |
0.8 |
0.7 |
0.92 |
0.93 |
0.86 |
0.94 |
0.98 |
chr7 | 17215217 | 17221355 | chr7:17215217-17221355:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.26 |
0.3 |
0.83 |
0.83 |
0.88 |
0.88 |
0.84 |
0.96 |
0.84 |
0.77 |
0.88 |
0.85 |
chr7 | 18985072 | 18991069 | chr7:18985072-18991069:-:L1PA3:REF | L1PA3 | REF | full-length | HDAC9 | 0.03 |
0.66 |
0.9 |
0.72 |
0.86 |
0.99 |
0.71 |
0.99 |
0.95 |
0.95 |
0.98 |
0.98 |
chr7 | 19877681 | 19883794 | chr7:19877681-19883794:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.9 |
0.82 |
0.85 |
0.84 |
0.76 |
0.41 |
0.71 |
0.97 |
0.67 |
0.83 |
0.9 |
chr7 | 19883968 | 19890109 | chr7:19883968-19890109:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.91 |
0.71 |
0.71 |
0.88 |
0.79 |
0.24 |
0.78 |
0.95 |
0.54 |
0.84 |
0.99 |
chr7 | 20067809 | 20073950 | chr7:20067809-20073950:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101927668 | 0.05 |
0.95 |
0.96 |
0.93 |
0.96 |
0.96 |
0.84 |
0.94 |
0.98 |
0.92 |
0.96 |
0.99 |
chr7 | 22528296 | 22534331 | chr7:22528296-22534331:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.87 |
0.95 |
0.96 |
0.86 |
0.62 |
0.9 |
0.86 |
0.91 |
0.92 |
0.94 |
0.95 |
0.98 |
chr7 | 23035734 | 23039855 | chr7:23035734-23039855:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.45 |
0.79 |
0.96 |
0.73 |
0.22 |
0.9 |
0.93 |
0.9 |
0.9 |
— | 0.94 |
0.97 |
chr7 | 23321058 | 23327074 | chr7:23321058-23327074:+:L1PA3:REF | L1PA3 | REF | full-length | IGF2BP3 | 0.84 |
0.48 |
0.98 |
0.87 |
0.93 |
0.83 |
0.92 |
0.99 |
0.99 |
0.98 |
0.98 |
0.97 |
chr7 | 23822602 | 23828742 | chr7:23822602-23828742:-:L1PA4:REF | L1PA4 | REF | full-length | STK31 | 0.62 |
0.6 |
0.79 |
0.77 |
0.76 |
0.71 |
0.64 |
0.79 |
0.86 |
0.74 |
0.7 |
0.83 |