Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 370612 | 376718 | chr12:370612-376718:-:L1PA5:REF | L1PA5 | REF | full-length | KDM5A | 0.98 |
0.98 |
0.97 |
0.99 |
0.92 |
0.99 |
0.98 |
1.0 |
0.97 |
0.98 |
0.99 |
0.98 |
chr12 | 3392214 | 3398233 | chr12:3392214-3398233:-:L1PA3:REF | L1PA3 | REF | full-length | PRMT8 | 0.17 |
0.93 |
0.74 |
0.58 |
0.26 |
0.78 |
0.73 |
0.57 |
0.76 |
0.77 |
0.77 |
0.81 |
chr12 | 3500000 | 3505228 | chr12:3500000-3505228:-:L1HS:REF | L1HS | REF | 3prime-truncated | PRMT8 | 0.01 |
0.95 |
0.95 |
0.64 |
0.17 |
0.77 |
0.83 |
0.77 |
0.82 |
0.91 |
0.82 |
0.95 |
chr12 | 4508895 | 4514901 | chr12:4508895-4514901:+:L1PA2:REF | L1PA2 | REF | full-length | C12orf4 | 0.97 |
0.98 |
0.97 |
0.98 |
0.1 |
0.97 |
0.98 |
0.98 |
0.76 |
0.96 |
0.98 |
0.98 |
chr12 | 5116426 | 5122428 | chr12:5116426-5122428:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.01 |
0.95 |
0.7 |
0.15 |
0.95 |
0.67 |
0.97 |
0.81 |
0.7 |
0.95 |
0.01 |
chr12 | 5697472 | 5700760 | chr12:5697472-5700760:+:L1P1:REF | L1P1 | REF | 3prime-truncated | ANO2 | 0.11 |
0.82 |
0.78 |
0.23 |
0.88 |
0.64 |
0.64 |
0.78 |
0.94 |
0.36 |
0.76 |
0.89 |
chr12 | 7251131 | 7257263 | chr12:7251131-7257263:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.82 |
0.9 |
0.92 |
0.63 |
0.76 |
0.74 |
0.69 |
0.78 |
0.91 |
0.66 |
0.8 |
0.98 |
chr12 | 7508348 | 7510439 | chr12:7508348-7510439:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | CD163 | 0.01 |
0.94 |
0.8 |
0.32 |
0.89 |
0.93 |
0.8 |
0.78 |
0.95 |
0.48 |
0.7 |
0.98 |
chr12 | 9521530 | 9527573 | chr12:9521530-9527573:-:L1PA3:REF | L1PA3 | REF | full-length | OVOS | — | — | 0.98 |
0.96 |
0.92 |
0.94 |
0.98 |
0.94 |
— | 0.97 |
— | 0.99 |
chr12 | 9627298 | 9633386 | chr12:9627298-9633386:-:L1PA5:REF | L1PA5 | REF | full-length | LOC374443 | 0.41 |
0.92 |
0.6 |
0.4 |
0.84 |
0.59 |
0.71 |
0.63 |
— | 0.54 |
0.86 |
0.88 |
chr12 | 9845174 | 9850042 | chr12:9845174-9850042:-:L1P3:REF | L1P3 | REF | 3prime-truncated | KLRF1 | 0.15 |
0.77 |
0.62 |
0.44 |
0.89 |
0.33 |
0.01 |
0.39 |
0.89 |
0.63 |
0.67 |
0.04 |
chr12 | 11290236 | 11296361 | chr12:11290236-11296361:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.49 |
0.32 |
0.83 |
0.56 |
0.21 |
0.53 |
0.67 |
0.11 |
0.51 |
0.38 |
chr12 | 11297656 | 11303685 | chr12:11297656-11303685:+:L1PA2:REF | L1PA2 | REF | full-length | PRB4 | 0.15 |
0.65 |
0.67 |
0.84 |
0.03 |
0.57 |
0.42 |
0.54 |
0.39 |
0.62 |
0.61 |
0.51 |
chr12 | 11334413 | 11340550 | chr12:11334413-11340550:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.88 |
0.52 |
0.02 |
0.83 |
0.36 |
0.28 |
0.24 |
0.87 |
0.31 |
0.41 |
0.35 |
chr12 | 11377197 | 11383318 | chr12:11377197-11383318:+:L1PA4:REF | L1PA4 | REF | full-length | PRB1 | — | 0.59 |
0.56 |
0.06 |
0.92 |
0.53 |
0.35 |
0.64 |
0.89 |
0.04 |
0.63 |
0.07 |
chr12 | 11416212 | 11420885 | chr12:11416212-11420885:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LOC440084 | 0.0 |
0.89 |
0.77 |
0.08 |
0.94 |
0.75 |
0.25 |
0.7 |
0.96 |
0.63 |
0.79 |
0.77 |
chr12 | 14861686 | 14867484 | chr12:14861686-14867484:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.52 |
0.32 |
0.71 |
0.53 |
0.15 |
0.52 |
0.95 |
0.25 |
0.82 |
0.94 |
chr12 | 16377145 | 16383292 | chr12:16377145-16383292:-:L1PA4:REF | L1PA4 | REF | full-length | MGST1 | 0.04 |
0.37 |
0.72 |
0.41 |
0.48 |
0.79 |
0.9 |
0.94 |
0.92 |
0.63 |
0.96 |
0.97 |
chr12 | 16998314 | 17000000 | chr12:16998314-17000000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | SKP1P2 | 0.01 |
0.45 |
0.62 |
0.51 |
0.84 |
0.71 |
0.8 |
0.72 |
0.91 |
0.47 |
0.77 |
0.92 |
chr12 | 17699378 | 17705544 | chr12:17699378-17705544:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.51 |
0.66 |
0.5 |
0.88 |
0.62 |
0.71 |
0.68 |
0.94 |
0.42 |
0.62 |
0.98 |
chr12 | 17768360 | 17774389 | chr12:17768360-17774389:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.79 |
0.77 |
0.66 |
0.88 |
0.76 |
0.69 |
0.87 |
0.96 |
0.66 |
0.83 |
0.97 |
chr12 | 17855568 | 17861565 | chr12:17855568-17861565:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.81 |
0.67 |
0.74 |
0.7 |
0.75 |
0.58 |
0.79 |
0.94 |
0.5 |
0.81 |
0.98 |
chr12 | 18023799 | 18029914 | chr12:18023799-18029914:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.11 |
— | 0.76 |
0.69 |
0.73 |
0.73 |
0.56 |
0.67 |
— | 0.61 |
0.7 |
0.72 |
chr12 | 18785211 | 18791371 | chr12:18785211-18791371:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.77 |
0.86 |
0.83 |
0.73 |
0.9 |
0.81 |
0.72 |
0.88 |
0.93 |
0.8 |
0.94 |
0.98 |
chr12 | 19728689 | 19734844 | chr12:19728689-19734844:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.89 |
0.96 |
0.84 |
0.9 |
0.72 |
0.91 |
0.96 |
0.76 |
0.95 |
0.99 |
chr12 | 20667835 | 20673859 | chr12:20667835-20673859:+:L1PA3:REF | L1PA3 | REF | full-length | PDE3A | 0.02 |
0.7 |
0.58 |
0.94 |
0.74 |
0.71 |
0.59 |
0.77 |
0.89 |
0.58 |
0.8 |
0.81 |
chr12 | 21209060 | 21215087 | chr12:21209060-21215087:-:L1PA2:REF | L1PA2 | REF | full-length | SLCO1B1 | 0.12 |
0.83 |
0.73 |
0.8 |
0.03 |
0.77 |
0.71 |
0.82 |
0.79 |
0.8 |
0.83 |
0.98 |
chr12 | 21622800 | 21627711 | chr12:21622800-21627711:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LDHB | 0.77 |
0.54 |
0.96 |
0.85 |
0.93 |
0.87 |
0.11 |
0.9 |
0.95 |
0.93 |
0.73 |
0.98 |
chr12 | 22146187 | 22147432 | chr12:22146187-22147432:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
0.94 |
0.72 |
0.07 |
0.87 |
0.52 |
0.63 |
0.7 |
0.98 |
0.73 |
0.68 |
0.94 |
chr12 | 22400101 | 22406177 | chr12:22400101-22406177:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.88 |
0.23 |
0.1 |
0.83 |
0.38 |
0.12 |
0.58 |
0.94 |
0.05 |
0.47 |
0.93 |
chr12 | 23070636 | 23076652 | chr12:23070636-23076652:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.48 |
0.89 |
0.54 |
0.75 |
0.78 |
0.81 |
0.78 |
— | 0.84 |
0.88 |
0.85 |
chr12 | 23821799 | 23825530 | chr12:23821799-23825530:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SOX5 | 0.85 |
0.93 |
0.91 |
0.2 |
0.89 |
0.58 |
0.98 |
0.94 |
0.96 |
0.92 |
0.78 |
0.46 |
chr12 | 25486954 | 25489653 | chr12:25486954-25489653:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | LMNTD1 | 0.02 |
0.9 |
0.97 |
0.85 |
0.02 |
0.97 |
0.8 |
0.89 |
0.56 |
0.97 |
0.99 |
0.98 |
chr12 | 25536714 | 25542734 | chr12:25536714-25542734:+:L1PA3:REF | L1PA3 | REF | full-length | LMNTD1 | 0.0 |
0.97 |
0.93 |
0.96 |
0.68 |
0.88 |
0.69 |
0.97 |
0.9 |
0.91 |
0.93 |
0.87 |
chr12 | 26669557 | 26675709 | chr12:26669557-26675709:+:L1PA3:REF | L1PA3 | REF | full-length | ITPR2 | 0.76 |
0.97 |
0.96 |
0.98 |
0.87 |
0.96 |
0.98 |
0.97 |
0.97 |
0.95 |
0.97 |
0.98 |
chr12 | 27114232 | 27120439 | chr12:27114232-27120439:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
— | 0.94 |
0.9 |
0.83 |
0.84 |
0.65 |
0.85 |
0.96 |
0.95 |
0.94 |
0.97 |
chr12 | 27404617 | 27410753 | chr12:27404617-27410753:+:L1PA4:REF | L1PA4 | REF | full-length | ARNTL2 | 0.16 |
0.98 |
0.98 |
0.99 |
0.92 |
0.98 |
0.98 |
0.99 |
0.99 |
0.97 |
0.98 |
0.98 |
chr12 | 28760230 | 28761118 | chr12:28760230-28761118:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.11 |
0.53 |
0.93 |
0.89 |
0.63 |
0.89 |
0.68 |
0.94 |
0.97 |
0.86 |
0.94 |
0.97 |
chr12 | 29322812 | 29323063 | chr12:29322812-29323063:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | FAR2 | 0.97 |
0.94 |
0.94 |
0.98 |
0.91 |
0.94 |
0.98 |
0.99 |
0.9 |
0.91 |
0.97 |
0.97 |
chr12 | 29406310 | 29412472 | chr12:29406310-29412472:-:L1PA3:REF | L1PA3 | REF | full-length | OVCH1-AS1 | 0.19 |
0.79 |
0.84 |
0.87 |
0.82 |
0.79 |
0.75 |
0.79 |
0.8 |
0.75 |
0.86 |
0.85 |
chr12 | 29809726 | 29815750 | chr12:29809726-29815750:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.6 |
0.9 |
0.3 |
0.9 |
0.86 |
0.83 |
0.86 |
0.91 |
0.92 |
0.95 |
0.88 |
chr12 | 29909925 | 29916045 | chr12:29909925-29916045:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.66 |
0.52 |
0.6 |
0.93 |
0.48 |
0.03 |
0.64 |
0.93 |
0.3 |
0.87 |
0.91 |
chr12 | 30588353 | 30594511 | chr12:30588353-30594511:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.13 |
0.07 |
0.96 |
0.79 |
0.98 |
0.83 |
0.7 |
0.85 |
— | 0.72 |
0.97 |
0.97 |
chr12 | 30603853 | 30608559 | chr12:30603853-30608559:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.16 |
0.82 |
0.88 |
0.61 |
0.67 |
0.69 |
0.82 |
0.88 |
0.77 |
0.83 |
0.97 |
0.86 |
chr12 | 31163074 | 31169094 | chr12:31163074-31169094:+:L1PA3:REF | L1PA3 | REF | full-length | OVOS2 | 0.34 |
0.85 |
0.97 |
0.79 |
0.06 |
0.84 |
0.84 |
0.85 |
0.85 |
0.11 |
0.92 |
0.97 |
chr12 | 31550066 | 31556205 | chr12:31550066-31556205:-:L1PA4:REF | L1PA4 | REF | full-length | DENND5B | 0.2 |
0.87 |
0.9 |
0.89 |
0.94 |
0.87 |
0.87 |
0.93 |
0.93 |
0.94 |
0.92 |
0.92 |
chr12 | 33102281 | 33108456 | chr12:33102281-33108456:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.74 |
0.49 |
0.25 |
0.89 |
0.42 |
0.52 |
0.6 |
0.91 |
0.06 |
0.45 |
0.52 |
chr12 | 33141767 | 33147912 | chr12:33141767-33147912:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.97 |
0.69 |
0.06 |
0.86 |
0.78 |
0.05 |
0.79 |
0.97 |
0.32 |
0.8 |
0.87 |
chr12 | 33772866 | 33779014 | chr12:33772866-33779014:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.54 |
0.84 |
0.46 |
0.15 |
0.86 |
0.54 |
0.58 |
0.59 |
0.91 |
0.2 |
0.6 |
0.59 |
chr12 | 33864388 | 33864390 | chr12:33864388-33864390:-:L1HS:NONREF | L1HS | KNR | — | — | 0.68 |
0.98 |
0.88 |
— | — | 0.86 |
0.89 |
— | — | 0.61 |
0.79 |
0.88 |