Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 33930454 | 33936566 | chr12:33930454-33936566:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.44 |
0.97 |
0.35 |
0.22 |
0.87 |
0.56 |
0.45 |
0.53 |
0.9 |
0.07 |
0.53 |
0.55 |
chr12 | 34066822 | 34072846 | chr12:34066822-34072846:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.93 |
0.49 |
0.37 |
0.84 |
0.53 |
0.61 |
0.44 |
0.78 |
0.32 |
0.68 |
0.72 |
chr12 | 34133333 | 34136632 | chr12:34133333-34136632:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.47 |
0.35 |
0.36 |
0.32 |
0.86 |
0.48 |
0.42 |
0.53 |
0.78 |
0.2 |
0.58 |
0.91 |
chr12 | 34464049 | 34470194 | chr12:34464049-34470194:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.5 |
0.09 |
0.22 |
0.59 |
0.26 |
0.05 |
0.3 |
0.6 |
0.08 |
0.26 |
0.36 |
chr12 | 34608506 | 34614654 | chr12:34608506-34614654:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.53 |
0.23 |
0.04 |
0.64 |
0.2 |
0.02 |
0.3 |
0.52 |
0.02 |
0.22 |
0.15 |
chr12 | 37681608 | 37687760 | chr12:37681608-37687760:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.93 |
0.9 |
0.15 |
0.89 |
0.53 |
0.28 |
0.61 |
0.74 |
0.72 |
0.41 |
0.83 |
chr12 | 37786910 | 37793054 | chr12:37786910-37793054:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.14 |
0.09 |
0.05 |
0.76 |
0.2 |
0.02 |
0.22 |
0.59 |
0.01 |
0.24 |
0.25 |
chr12 | 38031433 | 38037568 | chr12:38031433-38037568:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.36 |
0.14 |
0.66 |
0.29 |
0.18 |
0.4 |
0.6 |
0.05 |
0.72 |
0.68 |
chr12 | 38507885 | 38510299 | chr12:38507885-38510299:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.04 |
0.5 |
0.67 |
0.5 |
0.18 |
0.0 |
0.16 |
— | 0.48 |
0.08 |
0.88 |
chr12 | 38656903 | 38659786 | chr12:38656903-38659786:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CPNE8 | 0.49 |
0.17 |
0.96 |
0.97 |
0.96 |
0.71 |
0.61 |
0.61 |
— | 0.92 |
0.55 |
1.0 |
chr12 | 38799646 | 38805673 | chr12:38799646-38805673:+:L1HS:REF | L1HS | REF | full-length | CPNE8 | 0.12 |
0.52 |
0.74 |
0.84 |
0.09 |
0.76 |
0.75 |
0.8 |
0.83 |
0.63 |
0.61 |
0.75 |
chr12 | 38963466 | 38969603 | chr12:38963466-38969603:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.51 |
0.73 |
0.56 |
0.68 |
0.66 |
0.29 |
0.78 |
0.66 |
0.64 |
0.59 |
0.89 |
chr12 | 38987676 | 38992577 | chr12:38987676-38992577:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.23 |
0.69 |
0.57 |
0.75 |
0.51 |
0.24 |
0.62 |
0.78 |
0.55 |
0.59 |
0.96 |
chr12 | 39469654 | 39475805 | chr12:39469654-39475805:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.56 |
0.23 |
0.81 |
0.74 |
0.9 |
0.55 |
0.33 |
0.51 |
0.94 |
0.83 |
0.63 |
0.97 |
chr12 | 39699134 | 39705085 | chr12:39699134-39705085:+:L1PA3:REF | L1PA3 | REF | full-length | C12orf40 | 0.09 |
0.89 |
0.92 |
0.92 |
0.92 |
0.79 |
0.36 |
0.78 |
0.96 |
0.88 |
0.8 |
0.98 |
chr12 | 39745958 | 39752060 | chr12:39745958-39752060:+:L1PA5:REF | L1PA5 | REF | full-length | C12orf40 | 0.15 |
0.91 |
0.87 |
0.89 |
0.87 |
0.81 |
0.41 |
0.73 |
0.97 |
0.93 |
0.93 |
0.99 |
chr12 | 39978316 | 39984339 | chr12:39978316-39984339:+:L1PA2:REF | L1PA2 | REF | full-length | SLC2A13 | 0.59 |
0.98 |
0.96 |
0.97 |
0.1 |
0.96 |
0.94 |
0.93 |
0.92 |
0.97 |
0.98 |
0.98 |
chr12 | 41081468 | 41087471 | chr12:41081468-41087471:-:L1PA3:REF | L1PA3 | REF | full-length | CNTN1 | — | 0.74 |
0.9 |
0.55 |
0.76 |
0.78 |
0.56 |
— | — | 0.85 |
0.67 |
0.9 |
chr12 | 41637415 | 41643440 | chr12:41637415-41643440:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.77 |
0.92 |
0.5 |
0.67 |
0.73 |
0.45 |
0.82 |
— | 0.94 |
0.78 |
0.99 |
chr12 | 41666304 | 41672330 | chr12:41666304-41672330:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.74 |
0.74 |
0.51 |
0.76 |
0.66 |
0.74 |
0.69 |
0.8 |
0.77 |
0.67 |
0.77 |
chr12 | 41672452 | 41678469 | chr12:41672452-41678469:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.89 |
0.91 |
0.64 |
0.9 |
0.8 |
0.84 |
0.78 |
0.94 |
0.92 |
0.7 |
0.96 |
chr12 | 41973167 | 41979337 | chr12:41973167-41979337:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.94 |
0.91 |
0.58 |
0.9 |
0.85 |
0.9 |
0.79 |
0.93 |
0.92 |
0.79 |
0.92 |
chr12 | 42043485 | 42049636 | chr12:42043485-42049636:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.1 |
— | 0.91 |
0.62 |
0.87 |
0.82 |
0.08 |
0.82 |
0.97 |
0.91 |
0.83 |
0.97 |
chr12 | 42062980 | 42069120 | chr12:42062980-42069120:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.96 |
0.88 |
0.63 |
0.89 |
0.75 |
0.55 |
0.84 |
0.96 |
0.85 |
0.72 |
0.96 |
chr12 | 42111145 | 42117288 | chr12:42111145-42117288:+:L1PA4:REF | L1PA4 | REF | full-length | GXYLT1 | 0.88 |
0.93 |
0.98 |
0.97 |
0.85 |
0.91 |
0.92 |
0.92 |
0.9 |
0.96 |
0.91 |
0.98 |
chr12 | 43227726 | 43233750 | chr12:43227726-43233750:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.16 |
0.85 |
0.96 |
0.77 |
0.23 |
0.93 |
0.85 |
0.96 |
0.96 |
0.94 |
0.92 |
0.99 |
chr12 | 43470973 | 43477008 | chr12:43470973-43477008:+:L1PA2:REF | L1PA2 | REF | full-length | ADAMTS20 | 0.02 |
0.83 |
0.79 |
0.63 |
0.13 |
0.82 |
0.8 |
0.76 |
0.93 |
0.83 |
0.83 |
0.91 |
chr12 | 43906481 | 43912505 | chr12:43906481-43912505:+:L1PA3:REF | L1PA3 | REF | full-length | TMEM117 | 0.05 |
0.16 |
0.96 |
0.91 |
0.9 |
0.97 |
0.97 |
0.95 |
0.97 |
0.94 |
0.95 |
0.98 |
chr12 | 44108220 | 44114234 | chr12:44108220-44114234:-:L1HS:REF | L1HS | REF | full-length | TMEM117 | 0.05 |
0.97 |
0.94 |
0.88 |
0.05 |
0.97 |
0.98 |
0.97 |
0.95 |
0.9 |
0.94 |
0.97 |
chr12 | 44558360 | 44559054 | chr12:44558360-44559054:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | NELL2 | 0.01 |
0.77 |
0.74 |
0.25 |
0.87 |
0.63 |
0.14 |
0.53 |
0.93 |
0.66 |
0.44 |
0.95 |
chr12 | 44681417 | 44687432 | chr12:44681417-44687432:-:L1PA3:REF | L1PA3 | REF | full-length | NELL2 | 0.01 |
0.88 |
0.95 |
0.63 |
0.74 |
0.76 |
0.61 |
0.71 |
0.96 |
0.82 |
0.7 |
0.97 |
chr12 | 44741317 | 44747454 | chr12:44741317-44747454:+:L1PA4:REF | L1PA4 | REF | full-length | NELL2 | 0.01 |
0.55 |
0.83 |
0.27 |
0.9 |
0.66 |
0.41 |
0.72 |
0.97 |
0.71 |
0.64 |
0.96 |
chr12 | 44897325 | 44900740 | chr12:44897325-44900740:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | NELL2 | 0.04 |
0.55 |
0.7 |
0.12 |
0.91 |
0.18 |
0.09 |
0.45 |
— | 0.54 |
0.25 |
0.94 |
chr12 | 44931705 | 44937851 | chr12:44931705-44937851:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.14 |
0.46 |
0.83 |
0.6 |
0.85 |
0.8 |
0.49 |
0.77 |
0.93 |
0.74 |
0.79 |
0.87 |
chr12 | 44950958 | 44956988 | chr12:44950958-44956988:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.96 |
0.93 |
0.82 |
0.23 |
0.85 |
0.81 |
0.83 |
0.93 |
0.91 |
0.87 |
0.98 |
chr12 | 45370846 | 45376865 | chr12:45370846-45376865:+:L1PA3:REF | L1PA3 | REF | full-length | ANO6 | 0.98 |
0.96 |
0.98 |
0.97 |
0.94 |
0.98 |
0.98 |
0.98 |
0.97 |
0.97 |
0.98 |
0.98 |
chr12 | 46246032 | 46248874 | chr12:46246032-46248874:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | SLC38A1 | — | — | 0.94 |
— | 0.89 |
0.86 |
0.97 |
— | — | 1.0 |
0.97 |
0.98 |
chr12 | 46283516 | 46289653 | chr12:46283516-46289653:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.04 |
0.89 |
0.71 |
0.66 |
0.85 |
0.66 |
0.02 |
0.73 |
0.95 |
0.49 |
0.81 |
0.81 |
chr12 | 46307044 | 46313162 | chr12:46307044-46313162:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.04 |
0.94 |
0.57 |
0.58 |
0.84 |
0.56 |
0.16 |
0.65 |
— | 0.23 |
0.57 |
0.92 |
chr12 | 46420944 | 46427078 | chr12:46420944-46427078:-:L1PA2:REF | L1PA2 | REF | full-length | LOC100288798 | — | 0.91 |
— | — | 0.89 |
0.93 |
0.98 |
— | — | — | 0.97 |
0.99 |
chr12 | 46539930 | 46546054 | chr12:46539930-46546054:-:L1PA5:REF | L1PA5 | REF | full-length | LOC100288798 | 0.87 |
0.97 |
0.96 |
0.98 |
0.93 |
0.97 |
0.98 |
0.99 |
0.95 |
0.84 |
0.97 |
0.99 |
chr12 | 46991807 | 46997956 | chr12:46991807-46997956:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.52 |
0.86 |
0.94 |
0.87 |
0.9 |
0.58 |
0.92 |
0.94 |
0.45 |
0.86 |
0.97 |
chr12 | 47056718 | 47062860 | chr12:47056718-47062860:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.77 |
— | 0.74 |
0.84 |
0.87 |
0.84 |
— | 0.85 |
0.92 |
0.54 |
— | 0.94 |
chr12 | 47426904 | 47432928 | chr12:47426904-47432928:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02156 | 0.32 |
0.91 |
0.83 |
0.01 |
0.69 |
0.94 |
0.67 |
0.89 |
0.9 |
0.73 |
0.94 |
0.93 |
chr12 | 48320193 | 48326175 | chr12:48320193-48326175:-:L1PA3:REF | L1PA3 | REF | full-length | H1FNT | 0.6 |
0.82 |
0.91 |
0.74 |
0.92 |
0.8 |
0.82 |
0.87 |
0.92 |
0.87 |
0.83 |
0.97 |
chr12 | 48403176 | 48409317 | chr12:48403176-48409317:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.8 |
0.8 |
0.89 |
0.88 |
0.8 |
0.82 |
— | — | 0.79 |
0.75 |
0.86 |
chr12 | 48474255 | 48478717 | chr12:48474255-48478717:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | ANP32D | 0.01 |
0.27 |
0.51 |
0.32 |
0.73 |
0.26 |
0.17 |
0.22 |
0.5 |
0.5 |
0.26 |
0.79 |
chr12 | 48552504 | 48554329 | chr12:48552504-48554329:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.04 |
0.0 |
0.8 |
0.02 |
0.82 |
0.34 |
0.0 |
0.25 |
0.88 |
0.09 |
0.48 |
0.21 |
chr12 | 51562631 | 51568657 | chr12:51562631-51568657:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.27 |
0.97 |
0.75 |
0.06 |
0.92 |
0.91 |
0.91 |
0.87 |
0.5 |
0.9 |
0.14 |
chr12 | 51568648 | 51571798 | chr12:51568648-51571798:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.28 |
0.97 |
— | 0.71 |
0.95 |
0.98 |
0.83 |
0.95 |
0.97 |
0.95 |
0.93 |
0.99 |