Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 74874868 | 74880901 | chr12:74874868-74880901:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.98 |
0.92 |
0.92 |
0.05 |
0.83 |
0.42 |
0.64 |
0.96 |
0.88 |
0.9 |
0.98 |
chr12 | 75517430 | 75523582 | chr12:75517430-75523582:-:L1PA4:REF | L1PA4 | REF | full-length | KRR1 | 0.21 |
0.92 |
0.93 |
0.85 |
0.91 |
0.9 |
0.71 |
0.93 |
0.97 |
0.95 |
0.96 |
0.98 |
chr12 | 76319624 | 76325685 | chr12:76319624-76325685:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.01 |
0.85 |
0.09 |
0.21 |
0.97 |
0.01 |
0.93 |
0.76 |
0.03 |
0.9 |
0.98 |
chr12 | 77459286 | 77464442 | chr12:77459286-77464442:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.12 |
0.28 |
0.11 |
0.86 |
0.67 |
0.26 |
0.58 |
0.89 |
0.32 |
0.61 |
0.88 |
chr12 | 77653964 | 77660122 | chr12:77653964-77660122:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.66 |
0.84 |
0.4 |
0.88 |
0.91 |
0.32 |
0.86 |
0.93 |
0.89 |
0.9 |
0.98 |
chr12 | 78506430 | 78512587 | chr12:78506430-78512587:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.68 |
0.36 |
0.77 |
0.7 |
0.47 |
0.8 |
0.96 |
0.87 |
0.9 |
0.98 |
chr12 | 78608485 | 78609976 | chr12:78608485-78609976:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.74 |
0.75 |
0.46 |
0.88 |
0.7 |
0.34 |
0.75 |
0.98 |
0.78 |
0.9 |
0.97 |
chr12 | 79039621 | 79045645 | chr12:79039621-79045645:-:L1PA2:REF | L1PA2 | REF | full-length | SYT1 | 0.11 |
0.01 |
0.95 |
0.87 |
0.07 |
0.92 |
0.94 |
0.98 |
0.65 |
0.01 |
0.98 |
0.98 |
chr12 | 79861341 | 79867483 | chr12:79861341-79867483:+:L1PA7:REF | L1PA7 | REF | full-length | PPP1R12A | — | — | — | 0.96 |
0.94 |
0.97 |
0.96 |
— | — | 0.99 |
0.99 |
1.0 |
chr12 | 80074669 | 80080828 | chr12:80074669-80080828:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.78 |
0.88 |
0.8 |
0.81 |
0.78 |
0.75 |
— | 0.92 |
0.83 |
0.9 |
0.82 |
chr12 | 80080827 | 80084722 | chr12:80080827-80084722:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.09 |
0.92 |
0.75 |
0.16 |
0.86 |
0.64 |
0.0 |
0.92 |
— | 0.65 |
0.87 |
0.91 |
chr12 | 80144055 | 80150076 | chr12:80144055-80150076:-:L1PA3:REF | L1PA3 | REF | full-length | OTOGL | 0.05 |
0.57 |
0.79 |
0.79 |
0.13 |
0.94 |
0.46 |
0.98 |
0.96 |
0.59 |
0.97 |
0.98 |
chr12 | 80244169 | 80250184 | chr12:80244169-80250184:-:L1PA2:REF | L1PA2 | REF | full-length | OTOGL | 0.02 |
0.93 |
0.95 |
0.77 |
0.05 |
0.87 |
0.75 |
0.97 |
0.81 |
0.97 |
0.97 |
0.98 |
chr12 | 80283863 | 80290348 | chr12:80283863-80290348:-:L1PA8:REF | L1PA8 | REF | full-length | OTOGL | 0.02 |
0.84 |
0.69 |
0.07 |
0.87 |
0.51 |
0.31 |
0.61 |
0.85 |
0.8 |
0.72 |
0.92 |
chr12 | 80448375 | 80454445 | chr12:80448375-80454445:-:L1PA3:REF | L1PA3 | REF | full-length | PTPRQ | — | 0.46 |
0.38 |
— | 0.42 |
0.41 |
0.35 |
0.46 |
0.49 |
0.41 |
0.41 |
0.46 |
chr12 | 80461876 | 80468017 | chr12:80461876-80468017:+:L1PA3:REF | L1PA3 | REF | full-length | PTPRQ | 0.01 |
0.61 |
0.66 |
0.55 |
0.64 |
0.68 |
0.37 |
0.67 |
0.69 |
0.65 |
0.64 |
0.66 |
chr12 | 80477525 | 80483539 | chr12:80477525-80483539:+:L1PA3:REF | L1PA3 | REF | full-length | PTPRQ | 0.01 |
0.01 |
0.96 |
0.76 |
0.06 |
0.97 |
0.81 |
0.99 |
0.9 |
0.95 |
0.98 |
0.99 |
chr12 | 81056342 | 81062394 | chr12:81056342-81062394:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.62 |
0.59 |
0.14 |
0.83 |
0.62 |
0.66 |
0.63 |
0.93 |
0.79 |
0.69 |
0.95 |
chr12 | 83299449 | 83305871 | chr12:83299449-83305871:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.12 |
0.49 |
0.55 |
0.14 |
0.85 |
0.36 |
0.02 |
0.5 |
1.0 |
— | 0.29 |
0.9 |
chr12 | 83549114 | 83555262 | chr12:83549114-83555262:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.55 |
0.52 |
0.25 |
0.9 |
0.65 |
0.06 |
0.64 |
0.92 |
0.68 |
0.58 |
0.97 |
chr12 | 83584266 | 83590245 | chr12:83584266-83590245:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.33 |
0.39 |
0.08 |
0.79 |
0.62 |
0.34 |
0.66 |
0.92 |
0.35 |
0.6 |
0.95 |
chr12 | 83870970 | 83874655 | chr12:83870970-83874655:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.0 |
0.82 |
0.67 |
0.93 |
0.95 |
0.73 |
0.95 |
— | 0.79 |
0.92 |
0.99 |
chr12 | 84005904 | 84011930 | chr12:84005904-84011930:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.74 |
0.72 |
0.67 |
0.8 |
0.87 |
0.56 |
0.82 |
0.92 |
0.65 |
0.84 |
0.89 |
chr12 | 85312419 | 85318459 | chr12:85312419-85318459:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.57 |
0.97 |
0.96 |
0.04 |
0.78 |
0.81 |
0.83 |
0.88 |
0.63 |
0.77 |
0.98 |
chr12 | 85785425 | 85791541 | chr12:85785425-85791541:+:L1PA5:REF | L1PA5 | REF | full-length | RASSF9 | 0.0 |
0.68 |
0.97 |
0.97 |
0.88 |
0.74 |
0.33 |
0.84 |
0.93 |
0.96 |
0.75 |
0.98 |
chr12 | 86061070 | 86064253 | chr12:86061070-86064253:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MGAT4C | 0.0 |
— | 0.56 |
— | 0.89 |
0.45 |
0.03 |
— | — | 0.79 |
0.69 |
0.73 |
chr12 | 86686177 | 86690757 | chr12:86686177-86690757:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | MGAT4C | 0.01 |
0.69 |
0.93 |
0.96 |
0.82 |
0.62 |
0.09 |
0.94 |
0.95 |
0.75 |
0.95 |
0.98 |
chr12 | 86763875 | 86770022 | chr12:86763875-86770022:+:L1PA3:REF | L1PA3 | REF | full-length | MGAT4C | 0.01 |
0.49 |
0.84 |
0.92 |
0.91 |
0.63 |
0.4 |
0.88 |
0.95 |
0.77 |
0.9 |
0.98 |
chr12 | 86970395 | 86976516 | chr12:86970395-86976516:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.56 |
0.95 |
0.89 |
0.36 |
0.1 |
0.66 |
0.94 |
0.66 |
0.85 |
0.96 |
chr12 | 87098406 | 87104423 | chr12:87098406-87104423:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.69 |
0.88 |
0.96 |
0.91 |
0.74 |
0.74 |
0.94 |
0.96 |
0.9 |
0.96 |
0.99 |
chr12 | 87393951 | 87400055 | chr12:87393951-87400055:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.97 |
0.83 |
0.96 |
0.94 |
0.62 |
0.37 |
0.85 |
0.96 |
0.76 |
0.94 |
0.97 |
chr12 | 87700677 | 87700894 | chr12:87700677-87700894:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.81 |
0.72 |
— | 0.49 |
0.6 |
0.41 |
— | — | 0.58 |
0.85 |
— |
chr12 | 88465064 | 88467375 | chr12:88465064-88467375:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.12 |
0.83 |
0.83 |
0.62 |
0.79 |
0.85 |
0.75 |
0.91 |
0.9 |
0.81 |
0.85 |
0.85 |
chr12 | 88708857 | 88714885 | chr12:88708857-88714885:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.97 |
0.94 |
0.91 |
0.06 |
0.96 |
0.8 |
0.9 |
0.95 |
0.82 |
0.9 |
0.98 |
chr12 | 90536603 | 90542635 | chr12:90536603-90542635:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.9 |
0.88 |
0.85 |
0.09 |
0.91 |
0.76 |
0.96 |
0.93 |
0.85 |
0.98 |
0.98 |
chr12 | 92313998 | 92320023 | chr12:92313998-92320023:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.82 |
0.94 |
0.92 |
0.84 |
0.63 |
0.9 |
0.78 |
0.94 |
0.94 |
0.85 |
0.86 |
0.97 |
chr12 | 92678206 | 92684347 | chr12:92678206-92684347:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.79 |
0.72 |
0.56 |
0.76 |
0.67 |
0.63 |
0.74 |
0.76 |
0.75 |
0.76 |
0.8 |
chr12 | 95923545 | 95929565 | chr12:95923545-95929565:-:L1PA3:REF | L1PA3 | REF | full-length | CCDC38 | 0.01 |
0.89 |
0.89 |
0.75 |
0.9 |
0.69 |
0.79 |
0.82 |
0.92 |
0.74 |
0.84 |
0.96 |
chr12 | 96315942 | 96321971 | chr12:96315942-96321971:+:L1PA2:REF | L1PA2 | REF | full-length | CDK17 | 0.01 |
0.01 |
0.02 |
0.33 |
0.07 |
0.87 |
0.94 |
0.73 |
0.26 |
0.01 |
0.85 |
0.01 |
chr12 | 96723682 | 96729837 | chr12:96723682-96729837:-:L1PA3:REF | L1PA3 | REF | full-length | CFAP54 | 0.01 |
0.93 |
0.93 |
0.76 |
0.51 |
0.85 |
0.87 |
0.91 |
0.86 |
0.62 |
0.88 |
0.92 |
chr12 | 97349408 | 97355558 | chr12:97349408-97355558:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.97 |
0.7 |
0.16 |
0.92 |
0.55 |
0.73 |
0.71 |
0.87 |
0.37 |
0.61 |
0.33 |
chr12 | 97603217 | 97609364 | chr12:97603217-97609364:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.67 |
0.68 |
0.57 |
0.79 |
0.54 |
0.63 |
0.64 |
0.83 |
0.58 |
0.62 |
0.65 |
chr12 | 97651133 | 97657167 | chr12:97651133-97657167:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.54 |
0.61 |
0.26 |
0.67 |
0.55 |
0.62 |
0.52 |
0.94 |
0.18 |
0.62 |
0.42 |
chr12 | 97723839 | 97729872 | chr12:97723839-97729872:+:L1PA3:REF | L1PA3 | REF | full-length | LOC643711 | 0.04 |
0.93 |
0.79 |
0.69 |
0.71 |
0.71 |
0.85 |
0.85 |
0.85 |
0.54 |
0.81 |
0.83 |
chr12 | 99185443 | 99191844 | chr12:99185443-99191844:+:L1PA7:REF | L1PA7 | REF | full-length | ANKS1B | 0.0 |
— | 0.34 |
0.0 |
0.4 |
0.4 |
0.02 |
0.42 |
— | 0.01 |
0.21 |
0.1 |
chr12 | 99237939 | 99244029 | chr12:99237939-99244029:+:L1PA6:REF | L1PA6 | REF | full-length | ANKS1B | 0.02 |
0.67 |
0.16 |
0.03 |
0.53 |
0.18 |
0.01 |
0.04 |
0.85 |
0.0 |
0.17 |
0.05 |
chr12 | 99315677 | 99321808 | chr12:99315677-99321808:-:L1PA5:REF | L1PA5 | REF | full-length | ANKS1B | 0.03 |
0.7 |
0.55 |
0.12 |
0.62 |
0.49 |
0.05 |
0.46 |
0.86 |
0.18 |
0.38 |
0.55 |
chr12 | 99463307 | 99469450 | chr12:99463307-99469450:+:L1PA3:REF | L1PA3 | REF | full-length | ANKS1B | 0.01 |
0.95 |
0.95 |
0.6 |
0.86 |
0.75 |
0.44 |
0.7 |
0.9 |
0.59 |
0.67 |
0.72 |
chr12 | 100636823 | 100642967 | chr12:100636823-100642967:-:L1PA4:REF | L1PA4 | REF | full-length | GAS2L3 | 0.07 |
0.96 |
0.88 |
0.66 |
0.88 |
0.95 |
0.91 |
0.97 |
0.95 |
0.71 |
0.97 |
0.98 |
chr12 | 101146043 | 101152064 | chr12:101146043-101152064:+:L1HS:REF | L1HS | REF | full-length | SLC5A8 | 0.01 |
0.95 |
0.95 |
0.76 |
0.04 |
0.84 |
0.87 |
0.87 |
0.78 |
0.79 |
0.94 |
0.97 |