Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 33170013 | 33176199 | chr2:33170013-33176199:+:L1PA3:REF | L1PA3 | REF | full-length | LTBP1 | 0.63 |
0.96 |
0.97 |
0.4 |
0.83 |
0.92 |
0.68 |
0.98 |
0.97 |
0.96 |
0.99 |
0.97 |
chr2 | 34558063 | 34561457 | chr2:34558063-34561457:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.65 |
0.15 |
0.12 |
0.88 |
0.3 |
0.13 |
0.31 |
0.92 |
0.02 |
0.31 |
0.6 |
chr2 | 35106860 | 35113009 | chr2:35106860-35113009:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.02 |
0.54 |
0.33 |
0.87 |
0.61 |
0.33 |
0.65 |
0.97 |
0.09 |
0.73 |
0.75 |
chr2 | 35319757 | 35325900 | chr2:35319757-35325900:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.94 |
0.4 |
0.32 |
0.9 |
0.5 |
0.45 |
0.65 |
0.76 |
0.1 |
0.53 |
0.71 |
chr2 | 35563061 | 35569205 | chr2:35563061-35569205:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.52 |
0.13 |
0.02 |
0.81 |
0.23 |
0.2 |
0.48 |
0.62 |
0.01 |
0.34 |
0.56 |
chr2 | 36112506 | 36118537 | chr2:36112506-36118537:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.83 |
0.81 |
0.68 |
0.07 |
0.77 |
0.81 |
0.84 |
0.95 |
0.62 |
0.84 |
0.89 |
chr2 | 36343098 | 36343100 | chr2:36343098-36343100:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.97 |
— | 0.21 |
0.94 |
0.97 |
— | 0.93 |
0.95 |
0.97 |
0.97 |
chr2 | 37956656 | 37963165 | chr2:37956656-37963165:-:L1PA7:REF | L1PA7 | REF | full-length | RMDN2 | 0.11 |
0.67 |
0.74 |
0.53 |
0.86 |
0.71 |
0.66 |
0.8 |
— | 0.68 |
0.73 |
1.0 |
chr2 | 38132407 | 38138592 | chr2:38132407-38138592:-:L1PA4:REF | L1PA4 | REF | full-length | CYP1B1-AS1 | 0.04 |
0.92 |
0.9 |
0.93 |
0.91 |
0.81 |
0.7 |
0.96 |
0.96 |
0.85 |
0.88 |
0.89 |
chr2 | 39575018 | 39581152 | chr2:39575018-39581152:-:L1PA5:REF | L1PA5 | REF | full-length | MAP4K3-DT | 0.52 |
0.94 |
0.92 |
0.92 |
0.93 |
0.96 |
0.98 |
0.93 |
0.99 |
0.87 |
0.97 |
0.98 |
chr2 | 40008598 | 40014619 | chr2:40008598-40014619:-:L1PA2:REF | L1PA2 | REF | full-length | SLC8A1-AS1 | 0.03 |
0.76 |
0.75 |
0.67 |
0.54 |
0.79 |
0.64 |
0.8 |
0.82 |
0.8 |
0.83 |
0.74 |
chr2 | 40232600 | 40238627 | chr2:40232600-40238627:-:L1PA2:REF | L1PA2 | REF | full-length | SLC8A1-AS1 | 0.02 |
0.42 |
0.95 |
0.68 |
0.26 |
0.99 |
0.77 |
0.99 |
0.94 |
0.89 |
0.98 |
0.94 |
chr2 | 40710866 | 40713411 | chr2:40710866-40713411:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.77 |
0.77 |
0.68 |
0.93 |
0.92 |
0.35 |
0.94 |
0.94 |
0.81 |
0.87 |
0.58 |
chr2 | 41824275 | 41824277 | chr2:41824275-41824277:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.82 |
0.96 |
— | — | — | — | — |
chr2 | 43542869 | 43549021 | chr2:43542869-43549021:-:L1PA3:REF | L1PA3 | REF | full-length | THADA | 0.97 |
0.98 |
0.98 |
0.98 |
0.94 |
0.99 |
0.98 |
0.98 |
0.99 |
0.98 |
0.98 |
0.98 |
chr2 | 43660471 | 43666500 | chr2:43660471-43666500:-:L1PA2:REF | L1PA2 | REF | full-length | PLEKHH2 | 0.79 |
0.4 |
0.9 |
0.89 |
0.05 |
0.88 |
0.93 |
0.88 |
0.92 |
0.63 |
0.9 |
0.98 |
chr2 | 45059559 | 45065587 | chr2:45059559-45065587:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.18 |
0.8 |
0.85 |
0.75 |
0.31 |
0.67 |
0.86 |
0.78 |
— | 0.88 |
0.9 |
0.86 |
chr2 | 45075744 | 45081776 | chr2:45075744-45081776:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.93 |
0.96 |
0.83 |
0.23 |
0.89 |
0.91 |
0.94 |
0.9 |
0.96 |
0.91 |
0.97 |
chr2 | 46418469 | 46418952 | chr2:46418469-46418952:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.88 |
0.98 |
0.94 |
0.97 |
0.93 |
0.94 |
0.89 |
0.96 |
0.97 |
0.85 |
0.96 |
0.98 |
chr2 | 48739839 | 48745890 | chr2:48739839-48745890:+:L1PA3:REF | L1PA3 | REF | full-length | STON1-GTF2A1L | 0.15 |
0.81 |
0.77 |
0.74 |
0.35 |
0.81 |
0.63 |
— | — | 0.73 |
0.88 |
— |
chr2 | 51312721 | 51318845 | chr2:51312721-51318845:-:L1PA4:REF | L1PA4 | REF | full-length | LOC730100 | 0.0 |
0.43 |
0.51 |
0.77 |
0.92 |
0.66 |
0.71 |
0.88 |
0.92 |
0.28 |
0.75 |
0.98 |
chr2 | 51391383 | 51397636 | chr2:51391383-51397636:+:L1PA7:REF | L1PA7 | REF | full-length | LOC730100 | 0.02 |
0.3 |
0.26 |
0.31 |
0.88 |
0.42 |
0.06 |
0.77 |
0.97 |
0.05 |
0.47 |
0.95 |
chr2 | 51769031 | 51775205 | chr2:51769031-51775205:-:L1PA5:REF | L1PA5 | REF | full-length | LOC730100 | — | — | 0.62 |
— | — | 0.58 |
0.66 |
— | — | — | 0.63 |
— |
chr2 | 52039405 | 52045552 | chr2:52039405-52045552:-:L1PA3:REF | L1PA3 | REF | full-length | LOC730100 | 0.01 |
0.44 |
0.64 |
0.83 |
0.93 |
0.76 |
0.63 |
0.98 |
0.91 |
0.65 |
0.8 |
0.95 |
chr2 | 52419719 | 52422901 | chr2:52419719-52422901:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
— | 0.76 |
0.95 |
0.92 |
0.7 |
0.69 |
0.98 |
— | 0.36 |
0.95 |
0.98 |
chr2 | 53587033 | 53593044 | chr2:53587033-53593044:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.95 |
0.14 |
0.94 |
0.12 |
0.82 |
0.83 |
0.85 |
0.88 |
0.12 |
0.87 |
0.98 |
chr2 | 55442106 | 55447873 | chr2:55442106-55447873:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.86 |
0.52 |
0.95 |
0.96 |
0.83 |
0.89 |
0.83 |
0.87 |
0.96 |
0.94 |
0.84 |
0.96 |
chr2 | 55736329 | 55742393 | chr2:55736329-55742393:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.32 |
0.86 |
0.97 |
0.96 |
0.11 |
0.95 |
0.89 |
0.95 |
0.93 |
0.77 |
0.91 |
0.91 |
chr2 | 55788120 | 55794261 | chr2:55788120-55794261:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.02 |
0.95 |
0.96 |
0.9 |
0.91 |
— | 0.93 |
0.88 |
0.91 |
0.9 |
0.95 |
chr2 | 55831543 | 55837683 | chr2:55831543-55837683:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.18 |
0.98 |
0.95 |
1.0 |
0.94 |
0.99 |
1.0 |
0.98 |
1.0 |
0.9 |
0.91 |
1.0 |
chr2 | 56551597 | 56557745 | chr2:56551597-56557745:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.92 |
0.75 |
0.1 |
0.9 |
0.74 |
0.2 |
0.68 |
0.88 |
0.54 |
0.63 |
0.37 |
chr2 | 57418710 | 57424719 | chr2:57418710-57424719:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.12 |
0.72 |
0.56 |
0.29 |
0.6 |
0.52 |
0.7 |
— | 0.34 |
0.65 |
0.96 |
chr2 | 57608847 | 57614848 | chr2:57608847-57614848:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.85 |
0.75 |
0.6 |
0.8 |
0.8 |
0.79 |
— | 0.96 |
0.54 |
0.72 |
0.98 |
chr2 | 58168158 | 58171615 | chr2:58168158-58171615:+:L1P2:REF | L1P2 | REF | 3prime-truncated | FANCL | 0.94 |
0.97 |
0.98 |
0.98 |
0.9 |
0.97 |
0.97 |
0.97 |
0.97 |
0.95 |
0.9 |
0.96 |
chr2 | 58171614 | 58177788 | chr2:58171614-58177788:+:L1PA3:REF | L1PA3 | REF | full-length | FANCL | 0.72 |
0.93 |
0.96 |
0.97 |
0.8 |
0.95 |
0.93 |
0.99 |
0.91 |
0.97 |
0.98 |
0.94 |
chr2 | 58325341 | 58329409 | chr2:58325341-58329409:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.55 |
0.9 |
0.77 |
0.88 |
0.76 |
0.44 |
0.78 |
0.96 |
0.87 |
0.79 |
0.98 |
chr2 | 58381542 | 58387566 | chr2:58381542-58387566:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.77 |
0.89 |
0.92 |
0.15 |
0.86 |
0.88 |
0.86 |
0.94 |
0.91 |
0.9 |
0.98 |
chr2 | 60034873 | 60039411 | chr2:60034873-60039411:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.68 |
0.67 |
0.28 |
0.85 |
0.58 |
0.48 |
0.58 |
0.91 |
0.64 |
0.54 |
0.66 |
chr2 | 60083662 | 60089694 | chr2:60083662-60089694:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.87 |
0.92 |
0.71 |
0.17 |
0.82 |
0.84 |
0.84 |
0.9 |
0.84 |
0.82 |
0.9 |
chr2 | 60141191 | 60147223 | chr2:60141191-60147223:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.98 |
0.96 |
0.84 |
0.41 |
0.87 |
0.91 |
0.89 |
0.93 |
0.92 |
0.86 |
0.91 |
chr2 | 60189023 | 60195053 | chr2:60189023-60195053:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.11 |
0.88 |
0.1 |
0.89 |
0.76 |
0.72 |
0.75 |
0.96 |
0.68 |
0.76 |
0.9 |
chr2 | 60203200 | 60207771 | chr2:60203200-60207771:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.07 |
0.65 |
0.85 |
0.0 |
0.82 |
0.32 |
0.0 |
0.54 |
0.73 |
0.53 |
0.28 |
0.0 |
chr2 | 62580885 | 62586986 | chr2:62580885-62586986:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.93 |
0.83 |
0.65 |
0.94 |
0.96 |
0.98 |
0.83 |
0.94 |
0.81 |
0.76 |
0.97 |
chr2 | 62616418 | 62622729 | chr2:62616418-62622729:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.97 |
0.9 |
0.77 |
0.91 |
0.93 |
0.95 |
0.91 |
0.96 |
0.82 |
0.75 |
0.99 |
chr2 | 62645710 | 62651726 | chr2:62645710-62651726:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.84 |
0.68 |
0.32 |
0.73 |
0.7 |
0.97 |
0.65 |
0.85 |
0.65 |
0.85 |
0.88 |
chr2 | 62835478 | 62841498 | chr2:62835478-62841498:+:L1PA2:REF | L1PA2 | REF | full-length | EHBP1 | 0.98 |
0.98 |
0.98 |
0.99 |
0.3 |
0.99 |
0.99 |
0.98 |
0.98 |
0.98 |
0.99 |
0.98 |
chr2 | 63210476 | 63216721 | chr2:63210476-63216721:+:L1PA5:REF | L1PA5 | REF | full-length | WDPCP | 0.04 |
0.88 |
0.59 |
0.83 |
0.84 |
0.52 |
0.46 |
0.37 |
0.84 |
0.39 |
0.36 |
0.92 |
chr2 | 63530723 | 63536624 | chr2:63530723-63536624:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | WDPCP | 0.14 |
0.61 |
0.67 |
0.25 |
0.72 |
0.65 |
0.62 |
0.63 |
0.64 |
0.64 |
0.8 |
0.78 |
chr2 | 65924170 | 65930343 | chr2:65924170-65930343:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.3 |
0.85 |
0.97 |
0.18 |
0.89 |
0.76 |
0.45 |
0.84 |
0.96 |
0.93 |
0.8 |
0.82 |
chr2 | 66138949 | 66144939 | chr2:66138949-66144939:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.88 |
0.93 |
0.4 |
0.89 |
0.73 |
0.35 |
0.79 |
0.97 |
0.93 |
0.7 |
0.54 |