Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 220413500 | 220413502 | chr2:220413500-220413502:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.77 |
— | — | — | — | — | 0.83 |
0.77 |
— | — |
chr2 | 221984562 | 221990586 | chr2:221984562-221990586:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.94 |
0.56 |
0.25 |
0.8 |
0.72 |
0.91 |
0.97 |
0.94 |
0.93 |
0.81 |
chr2 | 222149601 | 222155632 | chr2:222149601-222155632:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.96 |
0.47 |
0.14 |
0.74 |
0.72 |
0.5 |
0.61 |
0.92 |
0.66 |
0.83 |
chr2 | 227064885 | 227070875 | chr2:227064885-227070875:+:L1PA3:REF | L1PA3 | REF | full-length | COL4A4 | 0.18 |
0.93 |
0.98 |
0.92 |
0.07 |
0.84 |
0.79 |
0.84 |
0.77 |
0.88 |
0.91 |
0.99 |
chr2 | 227544418 | 227546619 | chr2:227544418-227546619:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | AGFG1 | 0.84 |
0.47 |
0.84 |
0.99 |
0.87 |
0.84 |
— | 0.98 |
0.92 |
0.84 |
0.73 |
0.85 |
chr2 | 228030894 | 228037043 | chr2:228030894-228037043:+:L1PA4:REF | L1PA4 | REF | full-length | SPHKAP | 0.01 |
0.87 |
0.6 |
0.59 |
0.84 |
0.65 |
0.13 |
0.55 |
0.94 |
0.11 |
0.52 |
0.87 |
chr2 | 228199138 | 228205299 | chr2:228199138-228205299:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.57 |
0.63 |
0.33 |
0.91 |
0.7 |
0.49 |
— | 0.94 |
0.25 |
0.6 |
0.74 |
chr2 | 228419987 | 228426024 | chr2:228419987-228426024:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
— | 0.55 |
0.03 |
0.1 |
0.85 |
0.24 |
— | 0.83 |
0.25 |
0.66 |
0.61 |
chr2 | 228568257 | 228574281 | chr2:228568257-228574281:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01807 | 0.03 |
0.02 |
0.83 |
0.33 |
0.09 |
0.92 |
0.78 |
0.89 |
0.92 |
0.64 |
0.88 |
0.41 |
chr2 | 228755693 | 228761717 | chr2:228755693-228761717:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.86 |
0.76 |
0.63 |
0.95 |
0.77 |
0.89 |
0.96 |
0.59 |
0.9 |
0.9 |
chr2 | 229476842 | 229476844 | chr2:229476842-229476844:+:L1HS:NONREF | L1HS | KNR | — | DNER | — | 0.83 |
0.89 |
— | — | — | — | — | 0.86 |
0.71 |
— | 0.9 |
chr2 | 230337069 | 230342513 | chr2:230337069-230342513:-:L1HS:REF | L1HS | REF | 3prime-truncated | SP140L | 0.0 |
— | 0.96 |
0.99 |
0.08 |
0.98 |
0.97 |
0.98 |
0.95 |
0.5 |
0.98 |
0.01 |
chr2 | 230619262 | 230622123 | chr2:230619262-230622123:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.79 |
0.99 |
0.95 |
— | 0.94 |
0.98 |
0.72 |
0.99 |
0.98 |
0.94 |
0.99 |
1.0 |
chr2 | 232149196 | 232155229 | chr2:232149196-232155229:-:L1HS:REF | L1HS | REF | full-length | DIS3L2 | 0.93 |
0.97 |
0.96 |
0.94 |
0.18 |
0.96 |
0.98 |
0.94 |
0.81 |
0.97 |
0.98 |
0.99 |
chr2 | 232355238 | 232361245 | chr2:232355238-232361245:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.01 |
0.98 |
0.44 |
0.89 |
0.9 |
0.13 |
0.91 |
0.97 |
0.92 |
0.91 |
0.87 |
chr2 | 234775486 | 234781643 | chr2:234775486-234781643:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.87 |
0.86 |
0.45 |
0.88 |
0.85 |
— | 0.91 |
0.95 |
0.62 |
0.93 |
0.94 |
chr2 | 234888389 | 234894419 | chr2:234888389-234894419:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.47 |
0.98 |
0.96 |
0.08 |
0.88 |
0.98 |
0.93 |
0.77 |
0.02 |
0.95 |
0.99 |
chr2 | 236383666 | 236389689 | chr2:236383666-236389689:-:L1PA2:REF | L1PA2 | REF | full-length | IQCA1 | 0.21 |
0.97 |
0.98 |
0.92 |
0.18 |
0.81 |
0.81 |
0.78 |
0.77 |
0.96 |
0.86 |
0.97 |
chr2 | 237843469 | 237849565 | chr2:237843469-237849565:-:L1PA5:REF | L1PA5 | REF | full-length | RBM44 | 0.07 |
0.92 |
0.82 |
0.56 |
0.9 |
0.76 |
0.55 |
0.78 |
0.92 |
0.79 |
0.84 |
0.96 |
chr2 | 240544494 | 240550522 | chr2:240544494-240550522:+:L1PA3:REF | L1PA3 | REF | full-length | ANKMY1 | 0.91 |
0.98 |
0.91 |
0.89 |
0.91 |
0.98 |
0.98 |
0.97 |
0.98 |
0.92 |
0.98 |
0.98 |
chr3 | 809376 | 815406 | chr3:809376-815406:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01266 | 0.01 |
0.57 |
0.82 |
0.96 |
0.58 |
0.79 |
0.68 |
0.8 |
0.95 |
0.47 |
0.82 |
0.83 |
chr3 | 1387560 | 1393571 | chr3:1387560-1393571:+:L1PA2:REF | L1PA2 | REF | full-length | CNTN6 | 0.01 |
0.34 |
0.96 |
0.65 |
0.12 |
0.72 |
0.65 |
0.69 |
0.87 |
0.35 |
0.74 |
0.71 |
chr3 | 1913508 | 1919645 | chr3:1913508-1919645:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.03 |
0.06 |
0.4 |
0.16 |
0.65 |
0.16 |
0.02 |
0.25 |
0.94 |
0.14 |
0.31 |
0.06 |
chr3 | 2666594 | 2672735 | chr3:2666594-2672735:-:L1PA5:REF | L1PA5 | REF | full-length | CNTN4 | 0.01 |
0.25 |
0.81 |
0.65 |
0.88 |
0.75 |
0.48 |
0.84 |
0.95 |
0.67 |
0.8 |
0.69 |
chr3 | 3719386 | 3725382 | chr3:3719386-3725382:+:L1PA2:REF | L1PA2 | REF | full-length | LOC100130207 | 0.05 |
0.97 |
0.84 |
0.71 |
0.82 |
0.82 |
0.9 |
0.81 |
0.98 |
0.62 |
0.7 |
0.84 |
chr3 | 3885605 | 3892070 | chr3:3885605-3892070:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.03 |
0.46 |
0.08 |
0.15 |
0.74 |
0.21 |
0.1 |
0.15 |
0.92 |
0.01 |
0.18 |
0.11 |
chr3 | 3963076 | 3969110 | chr3:3963076-3969110:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.28 |
0.81 |
0.75 |
0.11 |
0.67 |
0.85 |
0.76 |
0.6 |
0.17 |
0.73 |
0.75 |
chr3 | 4253248 | 4259276 | chr3:4253248-4259276:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.74 |
0.85 |
0.65 |
0.11 |
0.77 |
0.83 |
0.82 |
0.88 |
0.46 |
0.77 |
0.76 |
chr3 | 4916534 | 4922591 | chr3:4916534-4922591:+:L1HS:REF | L1HS | REF | full-length | BHLHE40-AS1 | 0.84 |
0.9 |
0.79 |
0.86 |
0.07 |
0.87 |
0.8 |
0.88 |
0.89 |
0.82 |
0.8 |
0.86 |
chr3 | 5590805 | 5596951 | chr3:5590805-5596951:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.72 |
0.46 |
0.71 |
0.16 |
0.87 |
0.62 |
0.83 |
0.72 |
0.98 |
0.4 |
0.71 |
0.53 |
chr3 | 6266919 | 6273034 | chr3:6266919-6273034:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.56 |
0.45 |
0.45 |
0.88 |
0.71 |
0.69 |
0.8 |
0.94 |
0.32 |
0.75 |
0.91 |
chr3 | 6484911 | 6490929 | chr3:6484911-6490929:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.55 |
0.85 |
0.77 |
0.08 |
0.83 |
0.41 |
0.75 |
0.92 |
0.51 |
0.83 |
0.95 |
chr3 | 6764136 | 6770100 | chr3:6764136-6770100:-:L1PA3:REF | L1PA3 | REF | full-length | GRM7-AS3 | 0.0 |
0.57 |
0.79 |
0.75 |
0.08 |
— | 0.69 |
0.78 |
0.81 |
0.28 |
0.79 |
0.95 |
chr3 | 6945054 | 6951190 | chr3:6945054-6951190:-:L1PA4:REF | L1PA4 | REF | full-length | GRM7 | 0.02 |
0.43 |
0.74 |
0.41 |
0.86 |
0.69 |
0.56 |
0.73 |
0.96 |
0.38 |
0.65 |
0.97 |
chr3 | 7903494 | 7906799 | chr3:7903494-7906799:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.02 |
0.28 |
0.03 |
0.88 |
0.23 |
0.0 |
0.15 |
0.94 |
0.0 |
0.25 |
0.98 |
chr3 | 11488672 | 11492490 | chr3:11488672-11492490:-:L1HS:REF | L1HS | REF | 3prime-truncated | ATG7 | 0.84 |
0.95 |
0.98 |
0.96 |
0.93 |
0.97 |
0.93 |
0.96 |
0.95 |
0.94 |
0.97 |
0.97 |
chr3 | 15186665 | 15192699 | chr3:15186665-15192699:+:L1PA3:REF | L1PA3 | REF | full-length | COL6A4P1 | 0.02 |
0.19 |
0.97 |
0.26 |
0.46 |
0.83 |
0.82 |
0.86 |
0.95 |
0.15 |
0.86 |
0.31 |
chr3 | 16676612 | 16682753 | chr3:16676612-16682753:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.79 |
0.87 |
0.85 |
0.93 |
0.84 |
0.56 |
0.67 |
0.91 |
0.89 |
0.76 |
0.71 |
chr3 | 17693113 | 17697953 | chr3:17693113-17697953:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | TBC1D5 | 0.29 |
0.42 |
0.98 |
0.99 |
0.83 |
0.98 |
0.94 |
0.98 |
0.98 |
0.72 |
0.83 |
0.98 |
chr3 | 17858274 | 17861391 | chr3:17858274-17861391:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.13 |
0.96 |
0.07 |
0.86 |
0.01 |
0.9 |
0.93 |
0.9 |
0.65 |
0.86 |
0.9 |
0.57 |
chr3 | 18328056 | 18331287 | chr3:18328056-18331287:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.82 |
0.45 |
0.09 |
0.81 |
0.03 |
0.86 |
0.87 |
0.23 |
0.79 |
0.97 |
chr3 | 18516080 | 18520244 | chr3:18516080-18520244:+:L1HS:REF | L1HS | REF | 3prime-truncated | SATB1-AS1 | 0.02 |
0.42 |
0.85 |
0.21 |
0.11 |
0.51 |
0.49 |
0.5 |
0.71 |
0.08 |
0.53 |
0.66 |
chr3 | 18692573 | 18694307 | chr3:18692573-18694307:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.03 |
0.55 |
0.81 |
0.54 |
0.06 |
0.78 |
0.5 |
0.75 |
0.87 |
0.35 |
0.75 |
0.75 |
chr3 | 18930482 | 18936506 | chr3:18930482-18936506:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.65 |
0.87 |
0.6 |
0.06 |
0.8 |
0.86 |
0.83 |
0.84 |
0.66 |
0.8 |
0.85 |
chr3 | 18957806 | 18963833 | chr3:18957806-18963833:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.88 |
0.79 |
0.57 |
0.04 |
0.74 |
0.71 |
0.74 |
0.81 |
0.6 |
0.74 |
0.81 |
chr3 | 19097368 | 19103347 | chr3:19097368-19103347:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.13 |
0.74 |
0.41 |
0.08 |
0.28 |
0.39 |
0.61 |
0.52 |
0.4 |
0.65 |
0.78 |
chr3 | 19370610 | 19376625 | chr3:19370610-19376625:-:L1PA2:REF | L1PA2 | REF | full-length | KCNH8 | 0.02 |
0.39 |
0.63 |
0.42 |
0.21 |
0.67 |
0.76 |
0.78 |
0.93 |
0.52 |
0.66 |
0.75 |
chr3 | 19855048 | 19861075 | chr3:19855048-19861075:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.28 |
0.69 |
0.9 |
0.9 |
0.09 |
0.84 |
0.88 |
0.9 |
0.94 |
0.76 |
0.88 |
0.91 |
chr3 | 21364853 | 21367295 | chr3:21364853-21367295:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.08 |
0.44 |
0.33 |
0.15 |
0.87 |
0.85 |
0.26 |
0.65 |
0.88 |
0.03 |
0.52 |
0.21 |
chr3 | 22082078 | 22086635 | chr3:22082078-22086635:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.26 |
0.65 |
0.54 |
0.82 |
0.58 |
0.13 |
0.43 |
0.87 |
0.14 |
0.39 |
0.18 |