Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 159804371 | 159810375 | chr4:159804371-159810375:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.03 |
0.71 |
0.05 |
0.7 |
0.66 |
0.71 |
0.71 |
0.9 |
0.46 |
0.59 |
0.94 |
chr4 | 160120217 | 160126215 | chr4:160120217-160126215:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.97 |
0.88 |
0.99 |
0.14 |
0.74 |
0.77 |
0.81 |
0.98 |
0.41 |
0.78 |
0.98 |
chr4 | 160151167 | 160157326 | chr4:160151167-160157326:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.84 |
— | 0.86 |
— | 0.45 |
0.19 |
0.62 |
0.96 |
— | — | 0.97 |
chr4 | 160574032 | 160580085 | chr4:160574032-160580085:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.97 |
0.81 |
0.73 |
0.15 |
0.77 |
0.77 |
0.83 |
0.97 |
0.75 |
0.8 |
0.99 |
chr4 | 162965871 | 162970335 | chr4:162965871-162970335:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.92 |
0.61 |
0.35 |
0.81 |
0.42 |
0.02 |
0.58 |
0.93 |
0.29 |
0.54 |
1.0 |
chr4 | 163000000 | 163005177 | chr4:163000000-163005177:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.9 |
0.57 |
0.11 |
0.92 |
0.47 |
0.23 |
0.44 |
0.95 |
0.22 |
0.43 |
0.98 |
chr4 | 163207006 | 163212968 | chr4:163207006-163212968:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.84 |
0.95 |
0.91 |
0.69 |
0.49 |
0.83 |
0.88 |
0.87 |
0.84 |
0.74 |
0.86 |
0.94 |
chr4 | 163632232 | 163638253 | chr4:163632232-163638253:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | 0.02 |
0.78 |
0.77 |
0.8 |
0.78 |
0.68 |
0.61 |
0.79 |
0.97 |
0.47 |
0.84 |
0.97 |
chr4 | 163719033 | 163725152 | chr4:163719033-163725152:-:L1PA5:REF | L1PA5 | REF | full-length | MARCH1 | 0.01 |
0.56 |
0.71 |
0.92 |
0.89 |
0.6 |
0.41 |
0.78 |
0.91 |
0.43 |
0.79 |
0.91 |
chr4 | 164100748 | 164106778 | chr4:164100748-164106778:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | 0.03 |
— | 0.88 |
— | 0.22 |
0.74 |
0.64 |
0.84 |
0.94 |
0.65 |
0.82 |
0.95 |
chr4 | 164241613 | 164247620 | chr4:164241613-164247620:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | — | 0.74 |
— | — | — | — | 0.82 |
0.81 |
0.86 |
— | 0.73 |
— |
chr4 | 164350749 | 164356776 | chr4:164350749-164356776:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | 0.05 |
0.14 |
0.78 |
0.24 |
0.05 |
0.77 |
0.69 |
0.82 |
0.95 |
0.5 |
0.81 |
0.94 |
chr4 | 164553492 | 164559523 | chr4:164553492-164559523:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.76 |
0.86 |
0.66 |
0.68 |
0.76 |
0.47 |
0.66 |
0.94 |
0.55 |
0.81 |
0.84 |
chr4 | 166374373 | 166375365 | chr4:166374373-166375365:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.09 |
0.07 |
0.24 |
0.89 |
0.41 |
0.02 |
0.24 |
0.88 |
0.11 |
0.23 |
0.91 |
chr4 | 166449405 | 166449678 | chr4:166449405-166449678:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.03 |
0.76 |
0.86 |
0.92 |
0.86 |
0.83 |
0.86 |
0.83 |
0.9 |
0.75 |
0.83 |
0.9 |
chr4 | 166463312 | 166469345 | chr4:166463312-166469345:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.5 |
0.75 |
0.85 |
0.74 |
0.65 |
0.43 |
0.71 |
0.74 |
0.66 |
0.68 |
0.81 |
chr4 | 166569976 | 166576007 | chr4:166569976-166576007:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.33 |
0.88 |
0.86 |
0.08 |
0.84 |
0.74 |
0.88 |
0.94 |
0.77 |
0.82 |
0.98 |
chr4 | 166850455 | 166851634 | chr4:166850455-166851634:+:L1HS:REF | L1HS | REF | 3prime-truncated | SPOCK3 | 0.01 |
0.5 |
0.81 |
0.85 |
0.9 |
0.72 |
0.51 |
0.73 |
0.95 |
0.56 |
0.72 |
0.98 |
chr4 | 167055311 | 167058094 | chr4:167055311-167058094:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | SPOCK3 | — | — | — | 0.83 |
0.93 |
— | — | — | 0.98 |
0.62 |
0.78 |
0.94 |
chr4 | 167276135 | 167282161 | chr4:167276135-167282161:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.85 |
0.92 |
0.94 |
0.08 |
0.79 |
0.65 |
0.83 |
0.92 |
0.64 |
0.81 |
0.97 |
chr4 | 167343516 | 167349561 | chr4:167343516-167349561:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.72 |
0.89 |
0.89 |
0.21 |
0.72 |
0.55 |
0.84 |
0.94 |
0.59 |
0.79 |
0.98 |
chr4 | 167857881 | 167863903 | chr4:167857881-167863903:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.35 |
0.87 |
0.8 |
0.17 |
0.74 |
0.6 |
0.84 |
0.96 |
0.55 |
0.85 |
0.91 |
chr4 | 168441989 | 168448038 | chr4:168441989-168448038:+:L1PA2:REF | L1PA2 | REF | full-length | DDX60L | 0.05 |
0.9 |
0.88 |
0.93 |
0.49 |
0.93 |
0.73 |
0.98 |
0.94 |
0.86 |
0.98 |
0.97 |
chr4 | 169515501 | 169521532 | chr4:169515501-169521532:-:L1HS:REF | L1HS | REF | full-length | NEK1 | 0.95 |
0.97 |
0.98 |
0.97 |
0.37 |
0.98 |
0.98 |
0.98 |
0.97 |
0.97 |
0.98 |
0.98 |
chr4 | 170263278 | 170269442 | chr4:170263278-170269442:-:L1PA4:REF | L1PA4 | REF | full-length | LINC01612 | 0.01 |
0.96 |
0.58 |
0.5 |
0.91 |
0.66 |
0.81 |
0.8 |
0.95 |
0.37 |
0.73 |
0.98 |
chr4 | 170639225 | 170645417 | chr4:170639225-170645417:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.72 |
0.5 |
0.53 |
0.82 |
0.65 |
0.52 |
0.62 |
0.92 |
0.34 |
0.58 |
0.94 |
chr4 | 170782980 | 170789002 | chr4:170782980-170789002:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
— | 0.76 |
0.64 |
0.22 |
0.77 |
0.86 |
0.76 |
0.72 |
0.03 |
0.76 |
0.97 |
chr4 | 171903130 | 171909158 | chr4:171903130-171909158:+:L1PA3:REF | L1PA3 | REF | full-length | GALNTL6 | — | 0.34 |
0.91 |
— | 0.08 |
0.84 |
0.67 |
0.79 |
0.92 |
0.24 |
0.8 |
0.99 |
chr4 | 173603062 | 173609186 | chr4:173603062-173609186:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.18 |
0.09 |
— | — | — | 0.54 |
0.6 |
0.64 |
0.69 |
0.32 |
0.81 |
0.84 |
chr4 | 173616934 | 173619370 | chr4:173616934-173619370:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | 0.38 |
0.19 |
0.06 |
0.62 |
0.06 |
0.04 |
0.16 |
0.77 |
0.15 |
0.15 |
0.22 |
chr4 | 173785907 | 173792044 | chr4:173785907-173792044:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.07 |
0.62 |
0.85 |
0.55 |
0.89 |
0.72 |
0.51 |
0.84 |
0.93 |
0.92 |
0.93 |
0.87 |
chr4 | 173962946 | 173969035 | chr4:173962946-173969035:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | — | 0.65 |
— | 0.97 |
— | — | 0.99 |
chr4 | 174411896 | 174418039 | chr4:174411896-174418039:-:L1PA4:REF | L1PA4 | REF | full-length | MIR4276 | 0.83 |
0.82 |
0.85 |
0.97 |
0.91 |
0.51 |
0.24 |
0.56 |
0.93 |
0.76 |
0.65 |
0.96 |
chr4 | 174778462 | 174784478 | chr4:174778462-174784478:+:L1PA2:REF | L1PA2 | REF | full-length | GLRA3 | 0.07 |
0.67 |
0.94 |
0.81 |
0.09 |
0.73 |
0.81 |
0.79 |
0.95 |
0.05 |
0.78 |
0.98 |
chr4 | 177133448 | 177133959 | chr4:177133448-177133959:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.76 |
0.86 |
0.6 |
0.9 |
0.91 |
0.25 |
0.94 |
0.98 |
0.58 |
0.96 |
0.97 |
chr4 | 178015030 | 178021062 | chr4:178015030-178021062:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.21 |
0.64 |
0.81 |
0.37 |
0.24 |
0.8 |
0.79 |
0.81 |
0.95 |
0.6 |
0.86 |
0.99 |
chr4 | 178636688 | 178642035 | chr4:178636688-178642035:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | 0.64 |
0.58 |
0.1 |
0.9 |
0.36 |
0.02 |
0.54 |
0.97 |
0.43 |
0.38 |
0.97 |
chr4 | 179636522 | 179642706 | chr4:179636522-179642706:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.74 |
0.65 |
0.2 |
0.76 |
0.55 |
0.18 |
0.93 |
0.95 |
0.73 |
0.84 |
0.9 |
chr4 | 180468117 | 180472388 | chr4:180468117-180472388:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
— | 0.88 |
— | 0.85 |
0.23 |
0.02 |
0.31 |
0.9 |
0.82 |
0.33 |
0.96 |
chr4 | 181408889 | 181414915 | chr4:181408889-181414915:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.97 |
0.97 |
0.83 |
0.2 |
0.85 |
0.79 |
0.91 |
0.94 |
0.97 |
0.89 |
0.98 |
chr4 | 182356716 | 182362873 | chr4:182356716-182362873:-:L1PA3:REF | L1PA3 | REF | full-length | TENM3 | 0.05 |
0.89 |
0.89 |
0.88 |
0.88 |
0.81 |
0.55 |
0.91 |
0.91 |
0.88 |
0.93 |
0.86 |
chr4 | 182779057 | 182785080 | chr4:182779057-182785080:-:L1PA2:REF | L1PA2 | REF | full-length | TENM3 | 0.03 |
0.91 |
0.83 |
0.95 |
0.96 |
0.94 |
0.89 |
0.97 |
0.97 |
0.82 |
0.94 |
0.96 |
chr4 | 186110393 | 186116420 | chr4:186110393-186116420:-:L1PA2:REF | L1PA2 | REF | full-length | FAM149A | 0.28 |
0.86 |
0.97 |
0.83 |
0.17 |
0.78 |
0.53 |
0.88 |
0.84 |
0.96 |
0.91 |
0.93 |
chr4 | 187050521 | 187056650 | chr4:187050521-187056650:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.97 |
0.93 |
0.67 |
0.96 |
0.85 |
0.77 |
0.93 |
0.98 |
0.88 |
0.95 |
0.97 |
chr4 | 187856785 | 187862920 | chr4:187856785-187862920:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.77 |
0.88 |
0.66 |
0.82 |
0.74 |
0.59 |
0.94 |
0.96 |
0.78 |
0.85 |
0.94 |
chr4 | 188558269 | 188564287 | chr4:188558269-188564287:-:L1PA2:REF | L1PA2 | REF | full-length | LINC01060 | 0.03 |
0.97 |
0.95 |
0.96 |
0.96 |
0.9 |
0.87 |
0.93 |
0.95 |
0.85 |
0.91 |
0.98 |
chr4 | 189137085 | 189143104 | chr4:189137085-189143104:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.76 |
— | 0.87 |
0.85 |
0.96 |
0.97 |
— | — | — |
chr5 | 1709818 | 1715835 | chr5:1709818-1715835:+:L1PA3:REF | L1PA3 | REF | full-length | MIR4277 | 0.24 |
0.92 |
0.92 |
0.81 |
0.25 |
0.37 |
0.8 |
0.2 |
0.38 |
0.79 |
0.38 |
0.95 |
chr5 | 3439025 | 3445063 | chr5:3439025-3445063:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01019 | 0.26 |
0.68 |
0.78 |
0.59 |
0.92 |
0.82 |
0.39 |
0.84 |
0.96 |
0.59 |
0.76 |
0.74 |
chr5 | 4500001 | 4502372 | chr5:4500001-4502372:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.42 |
0.86 |
0.61 |
0.24 |
0.77 |
0.66 |
0.75 |
0.94 |
0.43 |
0.72 |
0.85 |