Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9 | 19833096 | 19837170 | chr9:19833096-19837170:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.22 |
0.2 |
0.28 |
0.12 |
0.79 |
0.4 |
0.13 |
0.37 |
0.83 |
0.18 |
0.35 |
0.21 |
chr9 | 20655632 | 20658802 | chr9:20655632-20658802:-:L1HS:REF | L1HS | REF | 3prime-truncated | FOCAD | 0.0 |
0.27 |
0.01 |
0.1 |
0.07 |
0.63 |
0.94 |
0.42 |
0.04 |
0.01 |
0.86 |
0.0 |
chr9 | 22348829 | 22354859 | chr9:22348829-22354859:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.96 |
0.95 |
0.9 |
0.07 |
0.76 |
0.68 |
— | 0.95 |
0.74 |
0.81 |
0.95 |
chr9 | 22502880 | 22509012 | chr9:22502880-22509012:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.72 |
0.92 |
0.81 |
— | 0.71 |
0.73 |
0.78 |
0.98 |
0.4 |
0.82 |
0.97 |
chr9 | 23105114 | 23111270 | chr9:23105114-23111270:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.46 |
0.54 |
0.04 |
0.88 |
0.53 |
0.4 |
0.7 |
0.95 |
0.07 |
0.56 |
0.88 |
chr9 | 23247435 | 23249484 | chr9:23247435-23249484:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | 0.0 |
0.02 |
0.01 |
0.79 |
0.1 |
0.0 |
0.26 |
0.85 |
0.01 |
0.12 |
0.38 |
chr9 | 24224676 | 24230670 | chr9:24224676-24230670:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.62 |
0.76 |
0.6 |
0.37 |
0.76 |
0.63 |
0.78 |
0.94 |
0.51 |
0.73 |
0.98 |
chr9 | 24387080 | 24391942 | chr9:24387080-24391942:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | 0.07 |
0.35 |
0.11 |
0.78 |
0.39 |
0.02 |
0.36 |
0.93 |
0.02 |
0.36 |
0.98 |
chr9 | 24574536 | 24580564 | chr9:24574536-24580564:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.65 |
0.72 |
0.58 |
0.19 |
0.7 |
0.56 |
0.63 |
0.73 |
0.59 |
0.7 |
0.89 |
chr9 | 26249770 | 26255795 | chr9:26249770-26255795:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.2 |
0.82 |
0.98 |
0.83 |
0.83 |
0.53 |
0.96 |
0.93 |
0.4 |
0.92 |
0.91 |
chr9 | 27220506 | 27226733 | chr9:27220506-27226733:+:L1PA7:REF | L1PA7 | REF | full-length | TEK | — | 0.5 |
0.48 |
0.07 |
0.93 |
0.25 |
0.02 |
0.88 |
0.9 |
0.07 |
0.91 |
0.71 |
chr9 | 27322444 | 27325072 | chr9:27322444-27325072:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MOB3B | 0.99 |
0.23 |
0.89 |
0.68 |
0.92 |
0.54 |
0.06 |
0.51 |
0.95 |
0.86 |
0.48 |
0.75 |
chr9 | 27690519 | 27696535 | chr9:27690519-27696535:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.1 |
0.36 |
0.96 |
0.82 |
0.1 |
0.44 |
0.96 |
0.87 |
0.78 |
0.3 |
0.81 |
0.97 |
chr9 | 28111895 | 28117865 | chr9:28111895-28117865:-:L1HS:REF | L1HS | REF | full-length | LINGO2 | 0.03 |
— | 0.22 |
0.77 |
0.15 |
— | — | 0.73 |
0.2 |
— | 0.81 |
0.98 |
chr9 | 28348134 | 28354162 | chr9:28348134-28354162:+:L1PA2:REF | L1PA2 | REF | full-length | LINGO2 | 0.04 |
0.04 |
0.75 |
0.53 |
0.56 |
0.6 |
0.5 |
0.67 |
0.84 |
0.26 |
0.5 |
0.9 |
chr9 | 28989909 | 28996028 | chr9:28989909-28996028:+:L1PA3:REF | L1PA3 | REF | full-length | LINGO2 | — | — | 0.8 |
0.96 |
0.91 |
0.63 |
0.63 |
0.69 |
0.96 |
0.28 |
0.66 |
0.96 |
chr9 | 29450392 | 29451920 | chr9:29450392-29451920:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | 0.68 |
0.92 |
0.89 |
0.03 |
0.81 |
0.83 |
0.84 |
0.67 |
0.63 |
0.81 |
0.98 |
chr9 | 30106864 | 30112891 | chr9:30106864-30112891:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.41 |
0.58 |
0.47 |
0.88 |
0.64 |
0.62 |
0.69 |
0.94 |
0.39 |
0.67 |
0.97 |
chr9 | 30539475 | 30545465 | chr9:30539475-30545465:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.5 |
0.83 |
0.52 |
0.91 |
0.69 |
0.74 |
0.72 |
0.97 |
0.45 |
0.72 |
0.93 |
chr9 | 31002347 | 31003432 | chr9:31002347-31003432:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.49 |
0.42 |
0.21 |
0.71 |
0.42 |
0.16 |
0.38 |
0.73 |
0.07 |
0.55 |
0.91 |
chr9 | 31056094 | 31062222 | chr9:31056094-31062222:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.81 |
0.71 |
0.34 |
0.89 |
0.63 |
0.6 |
0.7 |
0.96 |
0.21 |
0.69 |
0.98 |
chr9 | 31224956 | 31230636 | chr9:31224956-31230636:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.67 |
0.64 |
0.26 |
0.65 |
0.52 |
0.16 |
0.64 |
0.64 |
0.07 |
0.53 |
0.84 |
chr9 | 31294065 | 31300087 | chr9:31294065-31300087:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.79 |
0.78 |
0.67 |
0.79 |
0.81 |
0.58 |
0.66 |
0.98 |
0.45 |
0.74 |
0.89 |
chr9 | 31883172 | 31889274 | chr9:31883172-31889274:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.94 |
0.62 |
0.57 |
0.87 |
0.92 |
0.67 |
0.98 |
0.75 |
0.93 |
0.55 |
0.67 |
0.97 |
chr9 | 32149073 | 32155113 | chr9:32149073-32155113:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.25 |
0.69 |
0.87 |
0.87 |
0.79 |
0.86 |
0.96 |
0.84 |
0.87 |
0.75 |
0.85 |
0.94 |
chr9 | 32225047 | 32231059 | chr9:32225047-32231059:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.76 |
0.54 |
0.75 |
0.89 |
0.64 |
0.82 |
0.62 |
0.92 |
0.41 |
0.64 |
0.95 |
chr9 | 32710379 | 32716388 | chr9:32710379-32716388:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.98 |
0.94 |
0.79 |
0.92 |
0.81 |
0.85 |
0.82 |
0.97 |
0.78 |
0.8 |
0.95 |
chr9 | 32729016 | 32735047 | chr9:32729016-32735047:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.13 |
0.82 |
0.8 |
0.8 |
0.77 |
0.67 |
0.71 |
0.78 |
0.95 |
0.64 |
0.76 |
0.79 |
chr9 | 34526550 | 34532701 | chr9:34526550-34532701:-:L1PA5:REF | L1PA5 | REF | full-length | ENHO | 0.09 |
0.93 |
0.87 |
0.71 |
0.87 |
0.79 |
0.85 |
0.79 |
0.97 |
0.82 |
0.82 |
0.9 |
chr9 | 34761698 | 34767854 | chr9:34761698-34767854:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.23 |
0.93 |
0.98 |
0.99 |
0.71 |
0.82 |
0.92 |
0.87 |
0.86 |
0.94 |
0.88 |
0.93 |
chr9 | 34845598 | 34851753 | chr9:34845598-34851753:-:L1PA3:REF | L1PA3 | REF | full-length | FAM205BP | 0.01 |
0.02 |
0.87 |
0.96 |
0.89 |
0.76 |
0.67 |
0.74 |
0.94 |
0.63 |
0.81 |
0.93 |
chr9 | 40915781 | 40921920 | chr9:40915781-40921920:+:L1PA3:REF | L1PA3 | REF | full-length | MIR1299 | 0.07 |
0.16 |
0.36 |
0.24 |
0.67 |
0.45 |
0.24 |
0.41 |
0.64 |
0.11 |
0.38 |
0.66 |
chr9 | 62822443 | 62828465 | chr9:62822443-62828465:-:L1PA6:REF | L1PA6 | REF | full-length | LOC100132249 | 0.0 |
0.86 |
0.78 |
0.36 |
0.78 |
0.48 |
0.2 |
0.21 |
0.57 |
0.89 |
0.33 |
0.83 |
chr9 | 63913382 | 63916426 | chr9:63913382-63916426:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.23 |
0.69 |
0.9 |
— | 0.88 |
0.63 |
0.52 |
0.62 |
0.79 |
0.37 |
0.68 |
0.79 |
chr9 | 68593275 | 68594616 | chr9:68593275-68594616:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.21 |
— | 0.91 |
0.15 |
0.7 |
0.58 |
0.41 |
0.6 |
0.88 |
0.88 |
0.53 |
0.69 |
chr9 | 69434794 | 69440931 | chr9:69434794-69440931:-:L1PA4:REF | L1PA4 | REF | full-length | APBA1 | 0.01 |
0.93 |
0.97 |
0.55 |
0.9 |
0.97 |
0.76 |
0.93 |
0.98 |
0.88 |
0.98 |
0.86 |
chr9 | 69477107 | 69483129 | chr9:69477107-69483129:+:L1PA2:REF | L1PA2 | REF | full-length | APBA1 | 0.02 |
0.03 |
0.8 |
0.77 |
0.52 |
0.98 |
0.92 |
0.89 |
0.94 |
0.76 |
0.85 |
0.81 |
chr9 | 69506051 | 69512070 | chr9:69506051-69512070:+:L1PA2:REF | L1PA2 | REF | full-length | APBA1 | 0.03 |
0.09 |
0.97 |
0.84 |
0.61 |
0.98 |
0.96 |
0.98 |
0.95 |
0.78 |
0.98 |
0.94 |
chr9 | 70232212 | 70234017 | chr9:70232212-70234017:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SMC5-AS1 | 0.09 |
0.98 |
0.91 |
0.31 |
0.93 |
0.97 |
0.98 |
0.97 |
0.94 |
0.83 |
0.74 |
0.96 |
chr9 | 70240311 | 70246471 | chr9:70240311-70246471:+:L1PA6:REF | L1PA6 | REF | full-length | SMC5-AS1 | 0.12 |
0.95 |
0.93 |
0.14 |
0.85 |
0.82 |
0.95 |
0.86 |
0.98 |
0.88 |
0.94 |
0.96 |
chr9 | 72000000 | 72000629 | chr9:72000000-72000629:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.96 |
0.94 |
0.89 |
0.94 |
0.94 |
0.79 |
0.87 |
0.93 |
0.89 |
0.93 |
0.95 |
chr9 | 72072195 | 72076757 | chr9:72072195-72076757:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.48 |
0.39 |
0.83 |
0.6 |
0.21 |
0.14 |
0.35 |
0.48 |
0.42 |
0.31 |
0.66 |
chr9 | 74424274 | 74430304 | chr9:74424274-74430304:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.76 |
0.85 |
0.66 |
0.08 |
— | 0.81 |
0.75 |
0.94 |
0.9 |
0.81 |
0.76 |
chr9 | 75701100 | 75707247 | chr9:75701100-75707247:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.44 |
0.8 |
0.2 |
0.89 |
0.12 |
0.43 |
0.6 |
0.84 |
0.39 |
0.66 |
0.76 |
chr9 | 75762467 | 75763171 | chr9:75762467-75763171:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.43 |
0.68 |
0.24 |
0.84 |
0.67 |
0.36 |
0.71 |
0.9 |
0.36 |
0.64 |
0.87 |
chr9 | 77408305 | 77411381 | chr9:77408305-77411381:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | VPS13A | 0.97 |
0.89 |
0.94 |
0.98 |
0.92 |
0.97 |
0.91 |
0.98 |
0.96 |
0.97 |
0.9 |
0.98 |
chr9 | 77687672 | 77688390 | chr9:77687672-77688390:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.3 |
0.06 |
0.85 |
0.7 |
0.84 |
0.9 |
0.66 |
0.86 |
0.95 |
0.84 |
0.91 |
0.91 |
chr9 | 79097851 | 79103879 | chr9:79097851-79103879:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.44 |
0.91 |
0.88 |
0.21 |
0.96 |
0.62 |
0.95 |
0.95 |
0.84 |
0.96 |
0.96 |
chr9 | 79438972 | 79444977 | chr9:79438972-79444977:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.91 |
0.75 |
0.37 |
0.8 |
0.33 |
0.59 |
0.39 |
0.7 |
0.41 |
0.81 |
chr9 | 80344878 | 80345776 | chr9:80344878-80345776:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.72 |
0.55 |
0.24 |
0.75 |
0.47 |
0.42 |
0.68 |
0.72 |
0.59 |
0.44 |
0.59 |