Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 93638307 | 93644337 | chr4:93638307-93644337:-:L1HS:REF | L1HS | REF | full-length | GRID2 | 0.01 |
0.93 |
— | 0.88 |
0.07 |
0.81 |
0.75 |
0.86 |
0.88 |
— | 0.86 |
0.97 |
chr4 | 93676798 | 93682944 | chr4:93676798-93682944:+:L1PA3:REF | L1PA3 | REF | full-length | GRID2 | — | 0.81 |
0.87 |
0.83 |
0.8 |
0.72 |
0.53 |
0.84 |
0.97 |
0.93 |
0.85 |
0.98 |
chr4 | 93927898 | 93933215 | chr4:93927898-93933215:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.09 |
0.07 |
0.15 |
0.05 |
0.81 |
0.25 |
0.01 |
0.1 |
0.92 |
0.23 |
0.17 |
0.89 |
chr4 | 94098904 | 94105047 | chr4:94098904-94105047:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | 0.54 |
— | — | 0.89 |
0.52 |
0.82 |
chr4 | 94309125 | 94315291 | chr4:94309125-94315291:-:L1PA4:REF | L1PA4 | REF | full-length | HPGDS | 0.48 |
0.94 |
0.86 |
0.79 |
0.86 |
0.83 |
0.76 |
0.85 |
0.93 |
0.73 |
0.84 |
0.99 |
chr4 | 94835758 | 94841785 | chr4:94835758-94841785:-:L1PA3:REF | L1PA3 | REF | full-length | BMPR1B | 0.01 |
0.2 |
0.93 |
0.82 |
0.07 |
0.86 |
0.95 |
0.92 |
0.93 |
0.02 |
0.95 |
0.94 |
chr4 | 95133878 | 95140064 | chr4:95133878-95140064:-:L1PA5:REF | L1PA5 | REF | full-length | BMPR1B | 0.07 |
0.98 |
0.98 |
0.9 |
0.93 |
0.92 |
0.89 |
0.95 |
0.97 |
0.97 |
0.96 |
0.91 |
chr4 | 95171232 | 95177256 | chr4:95171232-95177256:-:L1PA3:REF | L1PA3 | REF | full-length | UNC5C | 0.61 |
0.91 |
0.97 |
0.75 |
0.89 |
0.86 |
0.79 |
0.95 |
0.98 |
0.98 |
0.97 |
0.97 |
chr4 | 95791404 | 95797509 | chr4:95791404-95797509:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.89 |
0.84 |
0.18 |
0.91 |
0.52 |
0.15 |
0.46 |
0.94 |
0.76 |
0.6 |
0.98 |
chr4 | 95914759 | 95920788 | chr4:95914759-95920788:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.94 |
0.86 |
0.74 |
0.58 |
0.74 |
0.66 |
0.84 |
0.88 |
0.88 |
0.77 |
0.93 |
chr4 | 96409195 | 96415225 | chr4:96409195-96415225:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02267 | 0.07 |
0.89 |
0.73 |
— | 0.56 |
0.81 |
0.72 |
0.81 |
— | 0.77 |
0.82 |
0.92 |
chr4 | 97560897 | 97566581 | chr4:97560897-97566581:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | STPG2 | 0.01 |
0.96 |
0.83 |
0.73 |
0.89 |
0.76 |
0.74 |
0.79 |
0.97 |
0.86 |
0.82 |
0.98 |
chr4 | 97633479 | 97639503 | chr4:97633479-97639503:+:L1PA3:REF | L1PA3 | REF | full-length | STPG2 | 0.02 |
0.97 |
0.91 |
0.74 |
0.05 |
0.84 |
0.89 |
0.85 |
0.94 |
0.32 |
0.87 |
0.98 |
chr4 | 97736223 | 97742374 | chr4:97736223-97742374:+:L1PA3:REF | L1PA3 | REF | full-length | STPG2 | 0.02 |
— | 0.74 |
0.66 |
0.92 |
0.74 |
0.38 |
0.7 |
0.94 |
0.74 |
0.75 |
0.92 |
chr4 | 97777927 | 97784080 | chr4:97777927-97784080:+:L1PA5:REF | L1PA5 | REF | full-length | STPG2 | 0.0 |
0.91 |
0.54 |
0.08 |
0.8 |
0.48 |
0.22 |
0.52 |
0.93 |
0.7 |
0.48 |
0.97 |
chr4 | 97903598 | 97905807 | chr4:97903598-97905807:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | STPG2 | 0.02 |
0.96 |
0.73 |
0.52 |
0.12 |
0.64 |
0.6 |
0.61 |
— | 0.06 |
0.62 |
0.97 |
chr4 | 98018021 | 98024143 | chr4:98018021-98024143:-:L1PA4:REF | L1PA4 | REF | full-length | STPG2 | — | 0.92 |
— | — | 0.75 |
0.55 |
0.39 |
— | 0.95 |
0.38 |
0.6 |
0.95 |
chr4 | 98592435 | 98598463 | chr4:98592435-98598463:-:L1HS:REF | L1HS | REF | full-length | TSPAN5 | 0.32 |
0.98 |
— | 0.82 |
0.47 |
0.99 |
0.84 |
0.99 |
0.95 |
0.74 |
0.98 |
0.99 |
chr4 | 99114079 | 99117819 | chr4:99114079-99117819:-:L1P1:REF | L1P1 | REF | 3prime-truncated | LOC100507053 | — | — | — | 0.76 |
0.82 |
0.81 |
0.87 |
0.84 |
— | 0.9 |
0.96 |
0.95 |
chr4 | 99492128 | 99498275 | chr4:99492128-99498275:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.96 |
0.47 |
0.43 |
0.92 |
0.57 |
0.92 |
0.78 |
0.96 |
0.64 |
0.82 |
0.96 |
chr4 | 99765432 | 99771462 | chr4:99765432-99771462:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.23 |
0.7 |
0.95 |
0.89 |
0.91 |
0.88 |
0.87 |
0.88 |
0.97 |
0.92 |
0.94 |
0.99 |
chr4 | 99792655 | 99798764 | chr4:99792655-99798764:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.89 |
0.79 |
0.65 |
0.9 |
0.72 |
0.7 |
0.85 |
0.88 |
0.85 |
0.88 |
0.97 |
chr4 | 100000524 | 100006553 | chr4:100000524-100006553:-:L1PA2:REF | L1PA2 | REF | full-length | LOC256880 | 0.11 |
0.93 |
0.93 |
0.67 |
0.16 |
0.95 |
0.8 |
0.95 |
— | 0.91 |
0.96 |
0.97 |
chr4 | 100043522 | 100049465 | chr4:100043522-100049465:-:L1PA3:REF | L1PA3 | REF | full-length | LOC256880 | 0.08 |
0.94 |
0.92 |
0.71 |
0.95 |
0.91 |
0.41 |
0.9 |
0.94 |
0.87 |
0.88 |
0.99 |
chr4 | 101405667 | 101411695 | chr4:101405667-101411695:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.83 |
0.75 |
— | 0.19 |
0.89 |
0.87 |
0.92 |
0.96 |
0.9 |
0.92 |
0.95 |
chr4 | 101744142 | 101744458 | chr4:101744142-101744458:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.97 |
0.92 |
0.83 |
0.88 |
0.75 |
0.41 |
0.67 |
0.96 |
0.82 |
0.77 |
0.91 |
chr4 | 102204930 | 102210958 | chr4:102204930-102210958:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
— | — | — | 0.52 |
0.73 |
— | — | — | 0.8 |
0.81 |
0.94 |
chr4 | 102374729 | 102380899 | chr4:102374729-102380899:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.62 |
0.92 |
0.9 |
0.75 |
0.59 |
0.71 |
0.69 |
0.84 |
0.83 |
0.71 |
0.9 |
chr4 | 103250265 | 103256290 | chr4:103250265-103256290:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.93 |
0.86 |
0.74 |
0.07 |
0.82 |
0.42 |
0.82 |
0.71 |
0.39 |
0.81 |
0.98 |
chr4 | 104321484 | 104327628 | chr4:104321484-104327628:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.65 |
0.04 |
0.79 |
0.48 |
0.2 |
0.58 |
0.91 |
0.48 |
0.61 |
0.88 |
chr4 | 104687024 | 104692901 | chr4:104687024-104692901:-:L1PA2:REF | L1PA2 | REF | full-length | CXXC4-AS1 | 0.1 |
0.97 |
0.89 |
0.6 |
0.09 |
0.83 |
0.75 |
0.9 |
0.93 |
0.84 |
0.86 |
0.98 |
chr4 | 104786988 | 104793014 | chr4:104786988-104793014:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.92 |
0.74 |
0.46 |
0.15 |
0.65 |
0.78 |
0.76 |
0.86 |
0.73 |
0.76 |
0.89 |
chr4 | 105307236 | 105313391 | chr4:105307236-105313391:-:L1PA2:REF | L1PA2 | REF | full-length | TET2-AS1 | 0.0 |
0.88 |
0.89 |
0.58 |
0.88 |
0.81 |
0.65 |
0.86 |
0.92 |
0.73 |
0.85 |
0.95 |
chr4 | 105729743 | 105735830 | chr4:105729743-105735830:-:L1PA5:REF | L1PA5 | REF | full-length | GSTCD | 0.94 |
0.94 |
0.97 |
0.96 |
0.92 |
0.97 |
0.97 |
0.93 |
0.96 |
0.96 |
0.98 |
0.97 |
chr4 | 105860130 | 105866235 | chr4:105860130-105866235:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.63 |
0.91 |
0.99 |
0.98 |
0.91 |
0.96 |
0.96 |
0.98 |
0.97 |
0.92 |
0.98 |
0.99 |
chr4 | 106119954 | 106121104 | chr4:106119954-106121104:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | TBCK | 0.73 |
0.34 |
0.97 |
0.97 |
0.46 |
0.89 |
0.98 |
0.97 |
0.97 |
0.91 |
0.98 |
0.85 |
chr4 | 106213354 | 106219380 | chr4:106213354-106219380:+:L1PA3:REF | L1PA3 | REF | full-length | TBCK | 0.97 |
0.79 |
0.98 |
0.98 |
0.42 |
0.96 |
0.99 |
0.93 |
0.97 |
0.58 |
0.98 |
0.99 |
chr4 | 106571057 | 106577070 | chr4:106571057-106577070:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.92 |
0.94 |
0.7 |
0.16 |
0.94 |
0.85 |
0.9 |
0.92 |
0.97 |
0.83 |
0.99 |
chr4 | 106935103 | 106941147 | chr4:106935103-106941147:+:L1PA2:REF | L1PA2 | REF | full-length | DKK2 | 0.02 |
0.53 |
0.86 |
0.51 |
0.59 |
0.87 |
0.73 |
0.76 |
0.96 |
0.8 |
0.8 |
0.98 |
chr4 | 107672082 | 107678199 | chr4:107672082-107678199:+:L1PA4:REF | L1PA4 | REF | full-length | PAPSS1 | 0.75 |
0.9 |
0.97 |
0.94 |
0.82 |
0.87 |
0.86 |
0.92 |
0.87 |
0.96 |
0.87 |
0.78 |
chr4 | 108435420 | 108441589 | chr4:108435420-108441589:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.16 |
0.66 |
0.4 |
0.02 |
0.86 |
0.41 |
0.01 |
0.67 |
0.93 |
0.75 |
0.85 |
0.84 |
chr4 | 108503121 | 108509236 | chr4:108503121-108509236:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.06 |
— | 0.72 |
— | 0.83 |
0.7 |
0.43 |
0.82 |
0.89 |
0.73 |
0.89 |
0.84 |
chr4 | 109327158 | 109327160 | chr4:109327158-109327160:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.86 |
chr4 | 109775045 | 109781152 | chr4:109775045-109781152:+:L1PA5:REF | L1PA5 | REF | full-length | CFI | 0.7 |
0.96 |
0.97 |
0.54 |
0.84 |
0.85 |
0.97 |
0.85 |
0.98 |
0.88 |
0.86 |
0.97 |
chr4 | 109934344 | 109939674 | chr4:109934344-109939674:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | EGF | 0.16 |
0.94 |
0.9 |
0.5 |
0.91 |
0.66 |
0.34 |
0.75 |
0.97 |
0.95 |
0.89 |
0.98 |
chr4 | 110409693 | 110411445 | chr4:110409693-110411445:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.28 |
0.01 |
0.91 |
0.87 |
0.1 |
0.87 |
0.94 |
0.88 |
0.16 |
0.01 |
0.85 |
0.02 |
chr4 | 110690112 | 110693684 | chr4:110690112-110693684:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.92 |
0.98 |
0.67 |
0.09 |
0.87 |
0.75 |
0.86 |
0.95 |
0.96 |
0.93 |
0.98 |
chr4 | 110757482 | 110763634 | chr4:110757482-110763634:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.67 |
0.93 |
0.21 |
0.91 |
0.72 |
0.25 |
0.79 |
0.92 |
0.87 |
0.84 |
0.96 |
chr4 | 110870809 | 110876821 | chr4:110870809-110876821:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.1 |
0.8 |
0.98 |
0.51 |
0.06 |
0.93 |
0.65 |
0.95 |
0.9 |
0.97 |
0.96 |
0.99 |
chr4 | 111147043 | 111153194 | chr4:111147043-111153194:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.74 |
0.76 |
0.74 |
0.93 |
0.7 |
0.36 |
0.84 |
0.81 |
0.72 |
0.81 |
0.84 |