Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5 | 177772245 | 177778274 | chr5:177772245-177778274:+:L1HS:REF | L1HS | REF | full-length | FAM153A | 0.15 |
0.95 |
— | — | 0.07 |
0.81 |
— | 0.88 |
0.9 |
— | 0.89 |
0.95 |
chr5 | 179101069 | 179107079 | chr5:179101069-179107079:+:L1PA3:REF | L1PA3 | REF | full-length | ADAMTS2 | 0.04 |
0.94 |
0.72 |
0.62 |
0.78 |
0.98 |
0.66 |
0.97 |
0.91 |
0.65 |
0.96 |
0.89 |
chr5 | 180902521 | 180908537 | chr5:180902521-180908537:-:L1PA2:REF | L1PA2 | REF | full-length | BTNL8 | 0.69 |
0.92 |
0.94 |
0.6 |
0.55 |
0.79 |
0.83 |
0.69 |
0.91 |
0.92 |
0.87 |
0.96 |
chr5 | 180926023 | 180932355 | chr5:180926023-180932355:+:L1PA7:REF | L1PA7 | REF | full-length | BTNL8 | 0.25 |
0.91 |
0.43 |
0.03 |
— | 0.33 |
0.0 |
0.31 |
0.73 |
0.09 |
0.32 |
0.86 |
chr6 | 1428614 | 1434750 | chr6:1428614-1434750:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.95 |
0.92 |
0.87 |
0.92 |
0.76 |
0.89 |
0.95 |
0.93 |
0.97 |
0.93 |
chr6 | 1750291 | 1751485 | chr6:1750291-1751485:+:L1P3:REF | L1P3 | REF | 3prime-truncated | GMDS | 0.0 |
— | 0.55 |
0.98 |
0.84 |
0.7 |
0.79 |
0.88 |
— | 0.95 |
0.89 |
0.33 |
chr6 | 2417774 | 2423803 | chr6:2417774-2423803:-:L1HS:REF | L1HS | REF | full-length | GMDS-DT | 0.06 |
0.94 |
0.89 |
0.96 |
0.08 |
0.97 |
0.92 |
0.96 |
0.96 |
0.95 |
0.95 |
0.91 |
chr6 | 3672187 | 3678310 | chr6:3672187-3678310:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.7 |
0.86 |
0.06 |
0.86 |
0.79 |
0.15 |
0.77 |
0.92 |
0.62 |
0.73 |
0.85 |
chr6 | 4328754 | 4334759 | chr6:4328754-4334759:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.21 |
0.93 |
0.96 |
0.46 |
0.89 |
0.69 |
0.9 |
0.81 |
0.11 |
0.97 |
0.93 |
chr6 | 4831172 | 4836230 | chr6:4831172-4836230:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | CDYL | 0.96 |
0.02 |
0.97 |
0.01 |
0.95 |
0.97 |
0.98 |
0.98 |
0.97 |
0.97 |
0.99 |
0.98 |
chr6 | 5892091 | 5892413 | chr6:5892091-5892413:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.01 |
0.95 |
0.77 |
0.84 |
0.06 |
0.64 |
0.28 |
0.56 |
0.21 |
0.03 |
0.52 |
0.01 |
chr6 | 6069786 | 6072877 | chr6:6069786-6072877:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
— | 0.69 |
0.27 |
— | 0.5 |
0.16 |
0.42 |
— | 0.16 |
0.49 |
0.67 |
chr6 | 6185423 | 6191251 | chr6:6185423-6191251:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | F13A1 | 0.02 |
0.46 |
0.89 |
— | 0.61 |
0.87 |
0.95 |
0.77 |
— | 0.64 |
0.84 |
0.82 |
chr6 | 6211664 | 6217690 | chr6:6211664-6217690:+:L1PA3:REF | L1PA3 | REF | full-length | F13A1 | 0.25 |
0.63 |
0.82 |
0.64 |
0.91 |
0.79 |
0.68 |
0.8 |
0.93 |
0.57 |
0.77 |
0.86 |
chr6 | 6294743 | 6300768 | chr6:6294743-6300768:-:L1PA3:REF | L1PA3 | REF | full-length | F13A1 | 0.01 |
0.71 |
0.78 |
0.62 |
0.79 |
0.77 |
0.54 |
0.69 |
0.88 |
0.58 |
0.69 |
0.59 |
chr6 | 7925704 | 7931830 | chr6:7925704-7931830:+:L1PA6:REF | L1PA6 | REF | full-length | BLOC1S5-TXNDC5 | 0.03 |
0.96 |
0.92 |
0.77 |
0.9 |
0.75 |
0.64 |
0.77 |
1.0 |
0.78 |
0.75 |
0.89 |
chr6 | 7943195 | 7949299 | chr6:7943195-7949299:-:L1PA4:REF | L1PA4 | REF | full-length | BLOC1S5-TXNDC5 | 0.01 |
0.96 |
0.96 |
0.79 |
0.88 |
0.74 |
0.58 |
0.83 |
0.91 |
0.86 |
0.78 |
0.97 |
chr6 | 8770471 | 8776512 | chr6:8770471-8776512:-:L1PA2:REF | L1PA2 | REF | full-length | LOC100506207 | 0.01 |
0.88 |
0.96 |
0.79 |
0.13 |
0.91 |
0.89 |
0.9 |
0.89 |
0.58 |
0.85 |
0.48 |
chr6 | 9443747 | 9449876 | chr6:9443747-9449876:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.97 |
0.94 |
0.77 |
0.88 |
0.91 |
0.21 |
0.84 |
0.94 |
0.78 |
0.88 |
0.96 |
chr6 | 9810750 | 9816777 | chr6:9810750-9816777:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.95 |
0.84 |
0.12 |
0.85 |
0.69 |
0.81 |
0.88 |
0.86 |
0.77 |
0.98 |
chr6 | 9882323 | 9888448 | chr6:9882323-9888448:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.96 |
0.92 |
0.89 |
0.68 |
0.44 |
0.54 |
0.69 |
0.94 |
0.8 |
0.77 |
0.96 |
chr6 | 9966044 | 9972049 | chr6:9966044-9972049:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.9 |
0.38 |
0.86 |
0.7 |
0.85 |
0.92 |
0.88 |
0.76 |
0.97 |
chr6 | 10133964 | 10134589 | chr6:10133964-10134589:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.19 |
0.53 |
0.95 |
0.87 |
0.92 |
0.93 |
0.6 |
0.69 |
0.93 |
0.92 |
0.7 |
0.91 |
chr6 | 11298870 | 11304963 | chr6:11298870-11304963:+:L1PA6:REF | L1PA6 | REF | full-length | NEDD9 | — | — | 0.79 |
0.18 |
— | — | 0.04 |
0.57 |
— | 0.58 |
0.82 |
0.55 |
chr6 | 12549192 | 12555347 | chr6:12549192-12555347:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.95 |
0.95 |
0.87 |
0.9 |
0.97 |
0.88 |
0.93 |
0.96 |
0.94 |
0.91 |
0.96 |
chr6 | 14479992 | 14486139 | chr6:14479992-14486139:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.94 |
0.97 |
0.95 |
0.53 |
0.93 |
0.96 |
0.64 |
0.96 |
0.96 |
0.86 |
0.96 |
0.98 |
chr6 | 16010534 | 16016561 | chr6:16010534-16016561:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.84 |
0.91 |
0.85 |
0.71 |
0.92 |
0.83 |
0.63 |
0.82 |
0.88 |
0.87 |
0.86 |
0.86 |
chr6 | 18228389 | 18234361 | chr6:18228389-18234361:+:L1PA5:REF | L1PA5 | REF | full-length | DEK | 0.98 |
0.99 |
0.98 |
0.99 |
0.93 |
0.99 |
0.98 |
0.97 |
0.97 |
0.97 |
0.98 |
0.98 |
chr6 | 19220828 | 19226980 | chr6:19220828-19226980:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.96 |
0.86 |
0.45 |
0.84 |
0.7 |
0.4 |
0.76 |
0.94 |
0.82 |
0.66 |
0.91 |
chr6 | 19246948 | 19253092 | chr6:19246948-19253092:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.55 |
0.82 |
0.37 |
0.94 |
0.82 |
0.43 |
0.75 |
0.83 |
0.43 |
0.71 |
0.94 |
chr6 | 19495142 | 19500000 | chr6:19495142-19500000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.09 |
— | 0.9 |
0.53 |
— | — | 0.38 |
— | — | 0.74 |
0.64 |
0.94 |
chr6 | 19764892 | 19770918 | chr6:19764892-19770918:+:L1HS:REF | L1HS | REF | full-length | LOC100506885 | 0.01 |
— | 0.97 |
— | 0.33 |
0.95 |
0.9 |
0.9 |
— | — | 0.93 |
0.97 |
chr6 | 22166353 | 22172500 | chr6:22166353-22172500:-:L1PA4:REF | L1PA4 | REF | full-length | CASC15 | 0.01 |
0.97 |
0.96 |
— | 0.92 |
0.86 |
0.56 |
0.94 |
0.99 |
0.74 |
0.96 |
0.97 |
chr6 | 22174840 | 22180874 | chr6:22174840-22180874:-:L1PA2:REF | L1PA2 | REF | full-length | CASC15 | 0.02 |
0.92 |
0.93 |
0.69 |
0.58 |
0.95 |
0.61 |
0.9 |
0.83 |
0.79 |
0.83 |
0.83 |
chr6 | 23058378 | 23060207 | chr6:23058378-23060207:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.0 |
0.88 |
0.63 |
0.16 |
0.9 |
0.85 |
0.19 |
0.96 |
0.98 |
0.6 |
0.92 |
0.97 |
chr6 | 23358988 | 23365117 | chr6:23358988-23365117:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.88 |
0.48 |
0.11 |
0.84 |
0.72 |
0.47 |
0.77 |
0.88 |
0.44 |
0.74 |
0.81 |
chr6 | 23804047 | 23810075 | chr6:23804047-23810075:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.12 |
0.82 |
0.5 |
0.89 |
0.78 |
0.64 |
0.73 |
0.86 |
0.65 |
0.77 |
0.94 |
chr6 | 28020757 | 28026912 | chr6:28020757-28026912:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.72 |
0.29 |
0.89 |
0.85 |
0.93 |
0.84 |
0.9 |
0.89 |
0.96 |
0.92 |
0.86 |
0.98 |
chr6 | 28621243 | 28627390 | chr6:28621243-28627390:+:L1PA3:REF | L1PA3 | REF | full-length | ZBED9 | 0.98 |
0.1 |
0.23 |
0.89 |
0.33 |
0.41 |
0.05 |
0.32 |
0.14 |
0.07 |
0.31 |
0.98 |
chr6 | 29779787 | 29785823 | chr6:29779787-29785823:+:L1PA6:REF | L1PA6 | REF | full-length | HCG4 | 0.05 |
0.89 |
0.78 |
0.71 |
0.72 |
0.58 |
0.43 |
0.56 |
0.83 |
0.76 |
0.36 |
0.92 |
chr6 | 30080599 | 30086625 | chr6:30080599-30086625:-:L1PA3:REF | L1PA3 | REF | full-length | RNF39 | — | 0.01 |
0.94 |
— | 0.96 |
0.79 |
0.86 |
— | 0.93 |
0.86 |
0.82 |
0.96 |
chr6 | 30520820 | 30524408 | chr6:30520820-30524408:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LINC02569 | 0.65 |
0.95 |
0.95 |
0.8 |
0.91 |
0.85 |
0.97 |
0.94 |
0.92 |
0.92 |
0.95 |
0.97 |
chr6 | 32262048 | 32263749 | chr6:32262048-32263749:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | TSBP1-AS1 | 0.02 |
0.98 |
0.85 |
0.91 |
0.63 |
0.63 |
0.03 |
0.78 |
0.86 |
0.73 |
0.78 |
0.75 |
chr6 | 39454557 | 39460534 | chr6:39454557-39460534:+:L1PA2:REF | L1PA2 | REF | full-length | KIF6 | 0.14 |
0.98 |
0.97 |
0.75 |
0.14 |
0.95 |
0.82 |
0.91 |
0.85 |
0.95 |
0.89 |
0.89 |
chr6 | 39508241 | 39510081 | chr6:39508241-39510081:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | KIF6 | 0.0 |
0.83 |
0.93 |
0.01 |
0.84 |
0.78 |
0.62 |
0.5 |
0.95 |
0.81 |
0.46 |
0.32 |
chr6 | 39533018 | 39539230 | chr6:39533018-39539230:+:L1PA3:REF | L1PA3 | REF | full-length | KIF6 | 0.01 |
0.83 |
0.95 |
0.36 |
0.9 |
0.95 |
0.74 |
0.89 |
0.96 |
0.75 |
0.87 |
0.83 |
chr6 | 39736405 | 39742567 | chr6:39736405-39742567:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.76 |
0.81 |
0.12 |
0.87 |
0.76 |
0.36 |
0.6 |
0.9 |
0.83 |
0.6 |
0.34 |
chr6 | 44754479 | 44760501 | chr6:44754479-44760501:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.96 |
0.95 |
0.66 |
0.75 |
0.84 |
0.78 |
0.92 |
0.96 |
0.92 |
0.88 |
0.97 |
chr6 | 44870634 | 44876665 | chr6:44870634-44876665:+:L1PA2:REF | L1PA2 | REF | full-length | SUPT3H | 0.63 |
0.93 |
0.97 |
0.89 |
0.41 |
0.95 |
0.97 |
0.96 |
0.96 |
0.96 |
0.95 |
0.98 |
chr6 | 44878624 | 44884626 | chr6:44878624-44884626:+:L1P3:REF | L1P3 | REF | full-length | SUPT3H | 0.12 |
0.9 |
0.96 |
0.74 |
0.88 |
0.81 |
0.97 |
0.93 |
0.94 |
0.86 |
0.91 |
0.95 |