Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 105245853 | 105251970 | chr12:105245853-105251970:+:L1PA4:REF | L1PA4 | REF | full-length | APPL2 | 0.34 |
0.57 |
0.86 |
— | 0.89 |
0.99 |
0.9 |
— | 0.95 |
0.9 |
0.98 |
0.97 |
chr12 | 105628261 | 105634450 | chr12:105628261-105634450:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.95 |
0.95 |
0.83 |
0.11 |
0.85 |
0.87 |
0.8 |
0.67 |
0.85 |
0.85 |
0.91 |
chr12 | 105776064 | 105782085 | chr12:105776064-105782085:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.66 |
0.96 |
0.92 |
0.69 |
0.92 |
0.65 |
0.92 |
0.96 |
0.92 |
0.9 |
0.94 |
chr12 | 106465469 | 106471598 | chr12:106465469-106471598:-:L1PA7:REF | L1PA7 | REF | full-length | POLR3B | 1.0 |
1.0 |
0.96 |
1.0 |
0.89 |
0.97 |
0.98 |
0.96 |
— | 1.0 |
0.56 |
1.0 |
chr12 | 106471865 | 106477891 | chr12:106471865-106477891:-:L1PA2:REF | L1PA2 | REF | full-length | POLR3B | 0.84 |
0.82 |
0.91 |
0.98 |
0.04 |
0.87 |
— | 0.79 |
— | 0.65 |
0.91 |
0.96 |
chr12 | 108996947 | 109000000 | chr12:108996947-109000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | SVOP | 0.02 |
0.96 |
0.91 |
0.84 |
0.1 |
0.84 |
0.92 |
0.86 |
0.77 |
0.81 |
0.86 |
0.95 |
chr12 | 111829162 | 111835315 | chr12:111829162-111835315:-:L1PA3:REF | L1PA3 | REF | full-length | MAPKAPK5-AS1 | — | 0.65 |
0.87 |
0.67 |
0.85 |
0.83 |
0.93 |
— | — | 0.33 |
0.88 |
0.81 |
chr12 | 112621197 | 112627228 | chr12:112621197-112627228:+:L1PA2:REF | L1PA2 | REF | full-length | RPH3A | 0.07 |
0.93 |
0.82 |
0.76 |
0.16 |
0.73 |
0.92 |
0.7 |
0.69 |
0.76 |
0.69 |
0.94 |
chr12 | 115285122 | 115291136 | chr12:115285122-115291136:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.9 |
0.94 |
0.78 |
0.66 |
0.94 |
0.91 |
0.92 |
0.94 |
0.89 |
0.87 |
0.81 |
chr12 | 119104817 | 119110953 | chr12:119104817-119110953:-:L1PA5:REF | L1PA5 | REF | full-length | SRRM4 | 0.01 |
0.45 |
0.63 |
0.22 |
0.86 |
0.68 |
0.52 |
0.67 |
0.95 |
0.16 |
— | 0.7 |
chr12 | 119532438 | 119538554 | chr12:119532438-119538554:-:L1PA7:REF | L1PA7 | REF | full-length | CCDC60 | 0.01 |
0.41 |
0.44 |
0.02 |
0.88 |
0.43 |
0.04 |
— | 0.83 |
0.08 |
0.41 |
0.47 |
chr12 | 126299023 | 126305038 | chr12:126299023-126305038:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.53 |
0.8 |
0.72 |
0.12 |
0.89 |
0.82 |
0.84 |
0.98 |
0.66 |
0.85 |
0.93 |
chr12 | 126318381 | 126318383 | chr12:126318381-126318383:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.77 |
— | — | — | 0.75 |
— | — | 0.57 |
— | 0.89 |
chr12 | 127094605 | 127100631 | chr12:127094605-127100631:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.84 |
0.34 |
0.77 |
0.61 |
0.79 |
0.88 |
0.74 |
0.77 |
0.92 |
0.34 |
0.73 |
0.13 |
chr12 | 127865855 | 127871882 | chr12:127865855-127871882:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02393 | — | 0.58 |
0.76 |
— | 0.97 |
0.75 |
0.64 |
0.63 |
— | 0.53 |
0.76 |
0.79 |
chr12 | 128491850 | 128497975 | chr12:128491850-128497975:-:L1PA5:REF | L1PA5 | REF | full-length | TMEM132C | 0.01 |
0.16 |
0.45 |
0.22 |
0.83 |
0.58 |
0.29 |
0.61 |
0.93 |
0.21 |
0.6 |
0.68 |
chr12 | 129037558 | 129043695 | chr12:129037558-129043695:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.2 |
0.72 |
0.39 |
0.9 |
0.59 |
0.46 |
0.74 |
0.78 |
0.44 |
0.73 |
0.69 |
chr12 | 133244941 | 133251091 | chr12:133244941-133251091:+:L1PA4:REF | L1PA4 | REF | full-length | ANHX | 0.0 |
0.29 |
0.56 |
0.0 |
0.82 |
0.7 |
0.03 |
0.8 |
0.87 |
0.03 |
0.79 |
0.85 |
chr13 | 18503477 | 18509621 | chr13:18503477-18509621:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.22 |
0.41 |
0.46 |
0.79 |
0.65 |
0.21 |
0.64 |
0.83 |
0.26 |
0.67 |
0.32 |
chr13 | 18983770 | 18989849 | chr13:18983770-18989849:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.13 |
0.75 |
0.38 |
0.03 |
0.75 |
0.3 |
0.18 |
0.36 |
0.6 |
0.04 |
0.28 |
0.09 |
chr13 | 19103712 | 19109724 | chr13:19103712-19109724:-:L1PA2:REF | L1PA2 | REF | full-length | LOC107984132 | 0.06 |
0.54 |
0.79 |
0.58 |
0.05 |
0.52 |
0.01 |
0.58 |
0.92 |
0.23 |
0.61 |
0.84 |
chr13 | 19212824 | 19216873 | chr13:19212824-19216873:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.74 |
0.67 |
— | 0.79 |
0.54 |
0.3 |
0.61 |
— | — | 0.62 |
0.67 |
chr13 | 19272995 | 19279012 | chr13:19272995-19279012:+:L1PA2:REF | L1PA2 | REF | full-length | ANKRD26P3 | 0.01 |
0.27 |
0.35 |
0.7 |
0.34 |
0.35 |
0.33 |
0.42 |
0.44 |
— | 0.35 |
0.42 |
chr13 | 19496786 | 19500000 | chr13:19496786-19500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | TPTE2 | 0.12 |
0.64 |
0.82 |
0.74 |
0.11 |
0.7 |
0.73 |
0.86 |
0.76 |
0.61 |
0.78 |
0.84 |
chr13 | 21855728 | 21861909 | chr13:21855728-21861909:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.55 |
0.91 |
0.38 |
0.89 |
0.64 |
0.2 |
0.76 |
0.95 |
0.84 |
0.8 |
0.91 |
chr13 | 22313827 | 22316900 | chr13:22313827-22316900:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.24 |
0.55 |
0.05 |
0.82 |
0.37 |
0.02 |
0.42 |
0.85 |
0.41 |
0.41 |
0.9 |
chr13 | 22574736 | 22580850 | chr13:22574736-22580850:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.79 |
0.95 |
0.67 |
0.42 |
0.82 |
0.77 |
0.86 |
0.95 |
0.91 |
0.83 |
0.98 |
chr13 | 23282871 | 23286072 | chr13:23282871-23286072:-:L1P3:REF | L1P3 | REF | 3prime-truncated | SGCG | — | — | 0.42 |
— | 0.67 |
— | 0.05 |
0.35 |
— | 0.35 |
0.39 |
0.57 |
chr13 | 24806647 | 24812668 | chr13:24806647-24812668:-:L1PA3:REF | L1PA3 | REF | full-length | RNF17 | — | 0.15 |
0.98 |
— | 0.69 |
0.81 |
0.73 |
0.79 |
0.98 |
0.98 |
0.84 |
0.96 |
chr13 | 25893048 | 25899177 | chr13:25893048-25899177:-:L1PA4:REF | L1PA4 | REF | full-length | ATP8A2 | 0.01 |
— | 0.77 |
0.39 |
— | 0.7 |
— | — | 0.99 |
0.76 |
— | 0.79 |
chr13 | 26102953 | 26103848 | chr13:26102953-26103848:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | 0.65 |
0.82 |
0.05 |
0.89 |
0.42 |
0.25 |
0.71 |
— | 0.46 |
0.66 |
0.04 |
chr13 | 27125486 | 27126431 | chr13:27125486-27126431:+:L1P2:REF | L1P2 | REF | 3prime-truncated | USP12 | 0.0 |
— | — | — | 0.84 |
0.98 |
0.95 |
— | — | 0.02 |
0.6 |
0.99 |
chr13 | 28688077 | 28694338 | chr13:28688077-28694338:-:L1PA7:REF | L1PA7 | REF | full-length | SLC46A3 | 0.06 |
0.19 |
— | 0.6 |
0.2 |
0.7 |
0.03 |
0.85 |
— | 0.5 |
0.93 |
0.96 |
chr13 | 29214185 | 29216814 | chr13:29214185-29216814:-:L1P3:REF | L1P3 | REF | 3prime-truncated | MTUS2 | — | 0.32 |
0.86 |
0.0 |
0.89 |
0.48 |
0.01 |
0.23 |
— | 0.3 |
0.49 |
0.42 |
chr13 | 29641706 | 29647706 | chr13:29641706-29647706:-:L1HS:REF | L1HS | REF | full-length | LOC102723345 | — | 0.01 |
— | 0.75 |
0.06 |
— | 0.03 |
0.56 |
0.1 |
— | — | 0.97 |
chr13 | 31302314 | 31308370 | chr13:31302314-31308370:+:L1HS:REF | L1HS | REF | full-length | B3GLCT | 0.7 |
0.9 |
0.91 |
0.89 |
0.66 |
0.9 |
0.92 |
0.89 |
0.91 |
0.89 |
0.91 |
0.91 |
chr13 | 33417969 | 33424106 | chr13:33417969-33424106:+:L1PA6:REF | L1PA6 | REF | full-length | STARD13 | 0.0 |
0.92 |
0.95 |
0.68 |
0.94 |
0.82 |
0.93 |
0.87 |
0.99 |
0.86 |
0.98 |
0.98 |
chr13 | 33984674 | 33990692 | chr13:33984674-33990692:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.97 |
0.97 |
0.95 |
0.91 |
0.95 |
0.98 |
0.85 |
0.96 |
0.9 |
0.92 |
0.99 |
chr13 | 34480262 | 34486294 | chr13:34480262-34486294:-:L1HS:REF | L1HS | REF | full-length | LINC02343 | 0.01 |
0.97 |
0.96 |
0.91 |
0.4 |
0.92 |
0.87 |
0.89 |
0.96 |
0.96 |
0.94 |
0.97 |
chr13 | 35422150 | 35428282 | chr13:35422150-35428282:-:L1PA4:REF | L1PA4 | REF | full-length | NBEA | 0.02 |
0.96 |
0.96 |
0.85 |
0.8 |
0.92 |
0.71 |
0.84 |
0.89 |
0.93 |
0.86 |
0.92 |
chr13 | 36008229 | 36014237 | chr13:36008229-36014237:-:L1PA2:REF | L1PA2 | REF | full-length | DCLK1 | — | 0.93 |
0.93 |
0.76 |
0.23 |
0.86 |
0.79 |
0.84 |
0.91 |
0.95 |
0.85 |
0.88 |
chr13 | 37149952 | 37155982 | chr13:37149952-37155982:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.57 |
0.77 |
0.85 |
0.13 |
0.97 |
0.06 |
0.95 |
0.95 |
0.01 |
0.98 |
0.9 |
chr13 | 37250340 | 37256381 | chr13:37250340-37256381:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.87 |
0.9 |
0.73 |
0.24 |
0.94 |
0.87 |
0.91 |
0.89 |
0.88 |
0.94 |
0.88 |
chr13 | 37822274 | 37828299 | chr13:37822274-37828299:-:L1PA3:REF | L1PA3 | REF | full-length | TRPC4 | — | — | — | 0.51 |
— | 0.85 |
0.84 |
0.93 |
— | 0.8 |
0.86 |
0.63 |
chr13 | 38065372 | 38071518 | chr13:38065372-38071518:+:L1PA3:REF | L1PA3 | REF | full-length | LINC00571 | 0.07 |
0.42 |
0.88 |
0.7 |
0.91 |
0.91 |
0.82 |
0.84 |
0.96 |
0.87 |
0.84 |
0.76 |
chr13 | 38112136 | 38118185 | chr13:38112136-38118185:+:L1PA3:REF | L1PA3 | REF | full-length | LINC00571 | 0.16 |
0.82 |
0.85 |
0.79 |
0.89 |
— | 0.76 |
0.77 |
0.86 |
0.93 |
0.82 |
0.9 |
chr13 | 38837794 | 38840413 | chr13:38837794-38840413:-:L1P3:REF | L1P3 | REF | 3prime-truncated | FREM2 | — | — | — | — | — | 0.46 |
0.1 |
— | — | — | 0.52 |
0.11 |
chr13 | 39000817 | 39006875 | chr13:39000817-39006875:-:L1PA2:REF | L1PA2 | REF | full-length | PROSER1 | 0.95 |
0.96 |
0.97 |
0.97 |
0.14 |
0.96 |
0.33 |
0.97 |
0.86 |
0.94 |
0.97 |
0.98 |
chr13 | 40356290 | 40362321 | chr13:40356290-40362321:+:L1PA2:REF | L1PA2 | REF | full-length | LINC00598 | 0.03 |
0.96 |
0.97 |
0.9 |
0.65 |
0.88 |
0.92 |
0.79 |
0.8 |
0.92 |
0.71 |
0.96 |
chr13 | 40711139 | 40713316 | chr13:40711139-40713316:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.34 |
0.97 |
0.94 |
0.74 |
0.91 |
0.91 |
0.89 |
0.92 |
0.89 |
0.93 |
0.93 |
0.97 |