Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 37560508 | 37560949 | chrX:37560508-37560949:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.49 |
0.63 |
0.56 |
0.93 |
0.49 |
0.31 |
0.69 |
— | 0.63 |
0.73 |
0.97 |
chrX | 37628446 | 37634592 | chrX:37628446-37634592:-:L1PA3:REF | L1PA3 | REF | full-length | LANCL3 | 0.66 |
0.84 |
0.85 |
0.85 |
0.92 |
0.78 |
0.85 |
0.9 |
0.98 |
0.82 |
0.84 |
0.97 |
chrX | 39279068 | 39281167 | chrX:39279068-39281167:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | 0.5 |
0.24 |
0.0 |
0.82 |
— | — | 0.48 |
— | 0.02 |
0.3 |
— |
chrX | 39541863 | 39543836 | chrX:39541863-39543836:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | 0.67 |
— | — | — | — | — | — | — | 0.49 |
— |
chrX | 42004299 | 42010329 | chrX:42004299-42010329:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.82 |
0.41 |
0.91 |
0.86 |
0.64 |
0.82 |
0.95 |
0.68 |
0.79 |
0.97 |
chrX | 42202163 | 42208183 | chrX:42202163-42208183:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.94 |
0.8 |
0.78 |
0.11 |
0.87 |
0.88 |
0.79 |
0.92 |
0.6 |
0.89 |
0.98 |
chrX | 42424860 | 42430890 | chrX:42424860-42430890:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.8 |
0.78 |
0.52 |
0.39 |
0.85 |
0.92 |
0.74 |
0.89 |
0.65 |
0.8 |
0.98 |
chrX | 42589683 | 42595809 | chrX:42589683-42595809:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.7 |
0.8 |
— | 0.93 |
0.8 |
0.63 |
— | — | 0.59 |
0.76 |
— |
chrX | 42650741 | 42656856 | chrX:42650741-42656856:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.87 |
0.82 |
0.7 |
0.85 |
0.77 |
0.74 |
0.81 |
0.94 |
0.51 |
0.8 |
0.98 |
chrX | 42810743 | 42816960 | chrX:42810743-42816960:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.78 |
0.51 |
0.23 |
0.85 |
0.62 |
0.48 |
0.68 |
— | 0.27 |
0.57 |
0.97 |
chrX | 42888370 | 42894396 | chrX:42888370-42894396:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | 0.73 |
0.83 |
0.2 |
0.88 |
0.84 |
0.46 |
0.97 |
0.41 |
0.86 |
0.99 |
chrX | 43670449 | 43676596 | chrX:43670449-43676596:-:L1PA3:REF | L1PA3 | REF | full-length | MAOA | 0.04 |
0.84 |
0.72 |
0.8 |
0.88 |
0.73 |
0.83 |
0.76 |
0.85 |
0.7 |
0.78 |
0.85 |
chrX | 43840491 | 43841034 | chrX:43840491-43841034:+:L1P3:REF | L1P3 | REF | 3prime-truncated | MAOB | 0.0 |
0.4 |
0.57 |
0.65 |
0.83 |
0.54 |
0.84 |
0.42 |
0.85 |
0.37 |
0.46 |
0.91 |
chrX | 46000000 | 46004481 | chrX:46000000-46004481:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.68 |
0.75 |
0.61 |
0.9 |
0.79 |
0.63 |
0.7 |
0.96 |
0.51 |
0.86 |
0.98 |
chrX | 46054884 | 46058449 | chrX:46054884-46058449:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.55 |
0.17 |
0.16 |
0.89 |
0.3 |
0.33 |
0.36 |
0.98 |
0.04 |
0.36 |
0.98 |
chrX | 46074554 | 46080736 | chrX:46074554-46080736:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.43 |
0.24 |
0.14 |
0.9 |
0.36 |
0.22 |
0.28 |
0.9 |
0.05 |
0.33 |
0.92 |
chrX | 46484679 | 46486516 | chrX:46484679-46486516:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.18 |
0.76 |
0.52 |
0.97 |
0.79 |
0.93 |
0.92 |
0.69 |
0.96 |
0.55 |
0.96 |
0.95 |
chrX | 46655357 | 46661385 | chrX:46655357-46661385:+:L1PA3:REF | L1PA3 | REF | full-length | SLC9A7 | 0.33 |
0.96 |
0.93 |
0.94 |
0.88 |
0.98 |
0.97 |
0.92 |
0.98 |
0.91 |
0.98 |
0.99 |
chrX | 47781815 | 47783673 | chrX:47781815-47783673:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.29 |
0.12 |
0.42 |
0.47 |
0.88 |
0.74 |
0.53 |
0.73 |
0.91 |
0.41 |
0.77 |
0.96 |
chrX | 47783671 | 47789697 | chrX:47783671-47789697:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.61 |
0.94 |
0.82 |
0.79 |
0.54 |
0.86 |
0.84 |
0.83 |
0.92 |
0.85 |
0.91 |
0.98 |
chrX | 48433480 | 48438697 | chrX:48433480-48438697:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.35 |
0.54 |
0.64 |
0.59 |
0.4 |
— | 0.04 |
— | — | 0.61 |
0.88 |
0.82 |
chrX | 49620062 | 49626205 | chrX:49620062-49626205:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.63 |
0.65 |
0.21 |
0.85 |
0.7 |
0.73 |
0.77 |
0.93 |
0.52 |
0.8 |
0.7 |
chrX | 50019456 | 50025505 | chrX:50019456-50025505:-:L1HS:REF | L1HS | REF | full-length | CLCN5 | 0.51 |
0.92 |
0.81 |
0.96 |
0.03 |
0.94 |
0.96 |
0.69 |
0.87 |
0.24 |
0.97 |
0.98 |
chrX | 50060143 | 50066175 | chrX:50060143-50066175:+:L1PA2:REF | L1PA2 | REF | full-length | CLCN5 | 0.55 |
0.91 |
0.74 |
0.97 |
0.36 |
0.96 |
0.98 |
0.74 |
0.89 |
0.88 |
0.97 |
0.98 |
chrX | 50296102 | 50302279 | chrX:50296102-50302279:-:L1PA4:REF | L1PA4 | REF | full-length | CCNB3 | 0.04 |
0.68 |
0.64 |
0.06 |
0.91 |
0.43 |
0.47 |
0.68 |
0.86 |
0.5 |
0.61 |
0.9 |
chrX | 51018802 | 51021520 | chrX:51018802-51021520:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.29 |
0.25 |
— | 0.2 |
0.0 |
0.36 |
— | 0.0 |
0.19 |
— |
chrX | 51124934 | 51127864 | chrX:51124934-51127864:+:L1P3:REF | L1P3 | REF | 3prime-truncated | LINC01284 | 0.0 |
0.52 |
0.35 |
0.13 |
0.85 |
— | 0.17 |
0.66 |
— | 0.28 |
0.38 |
0.41 |
chrX | 51262091 | 51268161 | chrX:51262091-51268161:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.46 |
0.57 |
0.68 |
0.79 |
0.73 |
0.73 |
0.71 |
0.84 |
0.63 |
0.73 |
0.88 |
chrX | 51427448 | 51433599 | chrX:51427448-51433599:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.83 |
0.81 |
0.64 |
0.95 |
0.83 |
0.74 |
0.74 |
0.84 |
0.84 |
0.81 |
0.93 |
chrX | 51512321 | 51518344 | chrX:51512321-51518344:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01496 | 0.15 |
0.88 |
0.84 |
0.81 |
0.89 |
0.88 |
0.52 |
0.89 |
0.96 |
0.82 |
0.89 |
0.96 |
chrX | 51531585 | 51537594 | chrX:51531585-51537594:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.88 |
0.67 |
0.68 |
0.84 |
— | 0.74 |
0.84 |
— | 0.72 |
0.85 |
0.91 |
chrX | 51623141 | 51629261 | chrX:51623141-51629261:+:L1PA5:REF | L1PA5 | REF | full-length | CENPVL3 | 0.0 |
0.08 |
0.43 |
0.02 |
0.89 |
0.59 |
0.02 |
0.55 |
0.93 |
0.14 |
0.67 |
0.56 |
chrX | 51644758 | 51650770 | chrX:51644758-51650770:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.68 |
0.77 |
0.59 |
0.92 |
0.86 |
0.83 |
0.81 |
0.95 |
0.72 |
0.87 |
0.98 |
chrX | 51991320 | 51997421 | chrX:51991320-51997421:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.86 |
0.72 |
0.55 |
0.88 |
0.78 |
0.66 |
0.79 |
0.97 |
0.58 |
0.82 |
0.82 |
chrX | 52111122 | 52117265 | chrX:52111122-52117265:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.49 |
0.23 |
0.09 |
0.84 |
0.46 |
0.28 |
0.49 |
0.77 |
0.13 |
0.5 |
0.19 |
chrX | 52145326 | 52151280 | chrX:52145326-52151280:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.78 |
0.77 |
0.17 |
0.89 |
0.71 |
0.93 |
0.76 |
0.98 |
0.54 |
0.85 |
0.58 |
chrX | 52222105 | 52228125 | chrX:52222105-52228125:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.67 |
0.87 |
0.74 |
0.35 |
0.85 |
0.88 |
0.81 |
0.91 |
0.76 |
0.88 |
0.92 |
chrX | 52291785 | 52297932 | chrX:52291785-52297932:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.48 |
0.32 |
0.15 |
0.83 |
0.52 |
0.75 |
0.54 |
0.86 |
0.27 |
0.54 |
0.42 |
chrX | 52550771 | 52553226 | chrX:52550771-52553226:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.12 |
0.68 |
0.22 |
0.91 |
0.8 |
0.51 |
0.64 |
0.95 |
0.35 |
0.47 |
0.56 |
chrX | 54052897 | 54053244 | chrX:54052897-54053244:-:L1P1:REF | L1P1 | REF | 3prime-truncated | PHF8 | 0.35 |
0.93 |
0.8 |
0.94 |
0.91 |
0.97 |
0.93 |
0.79 |
0.93 |
0.62 |
0.96 |
0.98 |
chrX | 54118685 | 54124744 | chrX:54118685-54124744:-:L1HS:REF | L1HS | REF | full-length | FAM120C | 0.54 |
0.83 |
0.76 |
0.9 |
0.38 |
0.76 |
0.92 |
0.81 |
— | 0.75 |
0.9 |
0.92 |
chrX | 54142115 | 54143166 | chrX:54142115-54143166:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | FAM120C | 0.07 |
— | 0.7 |
— | 0.65 |
— | — | 0.82 |
— | 0.73 |
— | — |
chrX | 54765705 | 54770404 | chrX:54765705-54770404:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | ITIH6 | 0.38 |
0.97 |
0.87 |
0.89 |
0.08 |
0.86 |
0.94 |
0.78 |
0.9 |
0.21 |
0.91 |
0.97 |
chrX | 54853945 | 54860101 | chrX:54853945-54860101:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.64 |
0.41 |
0.09 |
0.86 |
0.67 |
0.18 |
0.62 |
0.82 |
0.24 |
0.54 |
0.73 |
chrX | 54878587 | 54883219 | chrX:54878587-54883219:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.59 |
0.48 |
0.61 |
0.86 |
0.64 |
0.84 |
0.55 |
0.85 |
0.52 |
0.67 |
0.96 |
chrX | 55297654 | 55303790 | chrX:55297654-55303790:-:L1PA5:REF | L1PA5 | REF | full-length | LOC100421746 | 0.02 |
0.42 |
0.39 |
0.03 |
0.85 |
0.57 |
0.03 |
0.51 |
0.76 |
0.06 |
0.57 |
0.75 |
chrX | 55343685 | 55345200 | chrX:55343685-55345200:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.08 |
— | 0.25 |
0.37 |
0.86 |
0.8 |
0.44 |
0.64 |
0.8 |
0.24 |
0.64 |
0.87 |
chrX | 55396514 | 55402659 | chrX:55396514-55402659:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | 0.49 |
0.55 |
0.47 |
0.87 |
0.62 |
0.37 |
0.56 |
— | 0.36 |
0.61 |
0.81 |
chrX | 55768921 | 55775044 | chrX:55768921-55775044:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.38 |
0.63 |
0.43 |
0.98 |
0.79 |
0.95 |
0.89 |
0.62 |
0.91 |
0.59 |
0.94 |
0.98 |
chrX | 55845760 | 55851917 | chrX:55845760-55851917:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.86 |
0.27 |
0.19 |
0.85 |
0.58 |
0.62 |
0.46 |
0.64 |
0.06 |
0.59 |
1.0 |