Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 124122949 | 124129073 | chr2:124122949-124129073:+:L1PA5:REF | L1PA5 | REF | full-length | CNTNAP5 | 0.0 |
— | 0.54 |
— | — | 0.69 |
0.36 |
0.35 |
— | 0.35 |
0.23 |
0.29 |
chr2 | 124139775 | 124145807 | chr2:124139775-124145807:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.02 |
0.75 |
0.77 |
0.6 |
0.44 |
0.82 |
0.77 |
0.89 |
0.93 |
0.61 |
0.81 |
0.89 |
chr2 | 124356306 | 124362334 | chr2:124356306-124362334:-:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.02 |
0.7 |
0.83 |
0.75 |
0.56 |
0.83 |
0.82 |
0.86 |
0.96 |
0.56 |
0.81 |
0.9 |
chr2 | 124407870 | 124413893 | chr2:124407870-124413893:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.03 |
0.77 |
0.79 |
0.65 |
0.23 |
0.85 |
0.91 |
0.85 |
0.93 |
0.59 |
0.81 |
0.87 |
chr2 | 124593139 | 124599168 | chr2:124593139-124599168:-:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.04 |
0.82 |
0.75 |
0.77 |
0.21 |
0.82 |
0.9 |
0.89 |
0.96 |
0.6 |
0.86 |
0.87 |
chr2 | 126178048 | 126184064 | chr2:126178048-126184064:-:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.69 |
0.81 |
0.71 |
0.46 |
0.72 |
0.61 |
0.81 |
0.86 |
0.64 |
0.79 |
0.84 |
chr2 | 126195613 | 126199204 | chr2:126195613-126199204:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.04 |
0.3 |
0.68 |
0.07 |
0.85 |
0.47 |
0.38 |
0.63 |
0.93 |
0.31 |
0.62 |
0.32 |
chr2 | 128858984 | 128865016 | chr2:128858984-128865016:-:L1PA2:REF | L1PA2 | REF | full-length | LOC101927881 | 0.02 |
0.92 |
0.94 |
0.69 |
0.14 |
0.87 |
0.78 |
0.81 |
0.89 |
0.8 |
0.86 |
0.9 |
chr2 | 129415687 | 129417400 | chr2:129415687-129417400:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.11 |
0.94 |
0.85 |
0.63 |
0.07 |
0.78 |
0.78 |
0.81 |
0.93 |
0.64 |
0.78 |
0.8 |
chr2 | 129531920 | 129537968 | chr2:129531920-129537968:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.97 |
0.63 |
0.39 |
0.86 |
0.66 |
0.66 |
0.77 |
0.92 |
0.49 |
0.67 |
0.72 |
chr2 | 129685897 | 129687022 | chr2:129685897-129687022:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.43 |
— | 0.27 |
0.43 |
0.19 |
0.29 |
0.29 |
0.17 |
0.72 |
0.92 |
chr2 | 129998470 | 130000000 | chr2:129998470-130000000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.96 |
0.83 |
— | 0.82 |
0.64 |
0.51 |
0.71 |
0.93 |
0.73 |
0.54 |
0.89 |
chr2 | 131818809 | 131819312 | chr2:131818809-131819312:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.83 |
0.81 |
0.42 |
0.76 |
0.55 |
0.46 |
0.62 |
0.72 |
0.62 |
0.66 |
0.97 |
chr2 | 132062875 | 132069016 | chr2:132062875-132069016:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.62 |
0.59 |
0.31 |
0.79 |
0.61 |
0.36 |
0.69 |
0.89 |
0.38 |
0.68 |
0.9 |
chr2 | 132231325 | 132237282 | chr2:132231325-132237282:+:L1PA3:REF | L1PA3 | REF | full-length | ANKRD30BL | 0.02 |
0.8 |
0.8 |
0.53 |
0.56 |
0.7 |
0.47 |
0.78 |
0.83 |
0.85 |
0.73 |
0.88 |
chr2 | 132363793 | 132364061 | chr2:132363793-132364061:+:L1PA8:REF | L1PA8 | REF | 3prime-truncated | FAM201B | 0.01 |
0.29 |
0.33 |
0.02 |
0.37 |
0.22 |
0.01 |
0.2 |
0.52 |
0.06 |
0.12 |
0.32 |
chr2 | 132457507 | 132458261 | chr2:132457507-132458261:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | GPR39 | 0.0 |
0.93 |
0.43 |
0.56 |
0.89 |
0.47 |
0.09 |
0.46 |
0.87 |
0.04 |
0.7 |
0.94 |
chr2 | 133465007 | 133471038 | chr2:133465007-133471038:-:L1PA2:REF | L1PA2 | REF | full-length | NCKAP5 | 0.09 |
0.98 |
0.97 |
0.97 |
0.65 |
0.91 |
0.86 |
0.97 |
0.95 |
0.95 |
0.97 |
0.98 |
chr2 | 133546865 | 133552758 | chr2:133546865-133552758:+:L1PA2:REF | L1PA2 | REF | full-length | NCKAP5 | 0.04 |
0.95 |
0.87 |
0.91 |
0.09 |
0.9 |
0.85 |
0.98 |
0.84 |
0.85 |
0.89 |
0.58 |
chr2 | 133910480 | 133916504 | chr2:133910480-133916504:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.92 |
0.89 |
— | 0.12 |
0.79 |
— | 0.9 |
0.91 |
0.72 |
0.86 |
0.96 |
chr2 | 134650547 | 134656574 | chr2:134650547-134656574:-:L1PA2:REF | L1PA2 | REF | full-length | TMEM163 | 0.1 |
— | — | — | 0.08 |
0.8 |
— | — | — | 0.05 |
0.87 |
— |
chr2 | 134746514 | 134752631 | chr2:134746514-134752631:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.04 |
0.47 |
0.87 |
0.04 |
0.79 |
0.42 |
0.02 |
0.4 |
0.82 |
0.47 |
0.33 |
0.95 |
chr2 | 134825451 | 134831458 | chr2:134825451-134831458:+:L1PA2:REF | L1PA2 | REF | full-length | ACMSD | 0.01 |
0.98 |
0.96 |
0.52 |
0.52 |
0.82 |
0.87 |
0.86 |
0.94 |
0.92 |
0.79 |
0.98 |
chr2 | 135231810 | 135237948 | chr2:135231810-135237948:+:L1PA4:REF | L1PA4 | REF | full-length | ZRANB3 | 0.72 |
0.89 |
0.96 |
0.97 |
0.94 |
0.96 |
0.96 |
0.95 |
0.99 |
0.95 |
0.96 |
0.97 |
chr2 | 135291597 | 135297711 | chr2:135291597-135297711:-:L1PA4:REF | L1PA4 | REF | full-length | ZRANB3 | 0.96 |
0.98 |
0.92 |
0.99 |
0.93 |
0.98 |
0.98 |
0.92 |
0.98 |
0.9 |
0.98 |
0.99 |
chr2 | 135402975 | 135404882 | chr2:135402975-135404882:+:L1P1:REF | L1P1 | REF | 3prime-truncated | ZRANB3 | — | — | 0.98 |
— | — | — | — | 0.95 |
— | 0.97 |
— | — |
chr2 | 135515298 | 135518720 | chr2:135515298-135518720:-:L1P3:REF | L1P3 | REF | 3prime-truncated | ZRANB3 | 0.95 |
0.98 |
0.76 |
0.97 |
0.87 |
0.96 |
0.96 |
0.82 |
0.92 |
0.75 |
0.97 |
0.97 |
chr2 | 136264052 | 136267203 | chr2:136264052-136267203:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.74 |
0.44 |
0.81 |
0.83 |
0.21 |
0.01 |
0.25 |
0.79 |
0.15 |
0.22 |
0.71 |
chr2 | 136940864 | 136947121 | chr2:136940864-136947121:-:L1PA6:REF | L1PA6 | REF | full-length | THSD7B | 0.0 |
0.92 |
0.54 |
0.15 |
0.84 |
0.51 |
0.1 |
0.44 |
0.94 |
0.08 |
0.48 |
0.52 |
chr2 | 137309506 | 137315534 | chr2:137309506-137315534:-:L1PA3:REF | L1PA3 | REF | full-length | THSD7B | — | — | 0.78 |
— | 0.85 |
0.79 |
0.71 |
0.76 |
0.95 |
0.57 |
0.82 |
0.88 |
chr2 | 137393160 | 137399190 | chr2:137393160-137399190:-:L1PA2:REF | L1PA2 | REF | full-length | THSD7B | 0.13 |
0.97 |
0.89 |
— | 0.53 |
0.84 |
0.74 |
0.76 |
0.85 |
0.62 |
0.77 |
0.81 |
chr2 | 138795654 | 138802086 | chr2:138795654-138802086:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.86 |
0.78 |
0.04 |
0.95 |
0.42 |
0.24 |
0.52 |
0.97 |
0.35 |
0.43 |
0.92 |
chr2 | 138939402 | 138943113 | chr2:138939402-138943113:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.76 |
0.76 |
0.06 |
0.83 |
0.25 |
0.02 |
0.05 |
1.0 |
0.25 |
0.07 |
0.94 |
chr2 | 139532787 | 139538975 | chr2:139532787-139538975:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.77 |
0.78 |
0.35 |
0.76 |
0.69 |
0.38 |
0.77 |
0.97 |
0.88 |
0.64 |
0.96 |
chr2 | 142607781 | 142613812 | chr2:142607781-142613812:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.97 |
0.94 |
0.94 |
0.32 |
0.84 |
0.21 |
0.85 |
0.9 |
0.91 |
0.96 |
0.97 |
chr2 | 142806275 | 142812293 | chr2:142806275-142812293:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.22 |
0.08 |
0.95 |
— | 0.39 |
0.9 |
0.98 |
0.97 |
0.95 |
0.83 |
0.97 |
0.99 |
chr2 | 143006042 | 143012076 | chr2:143006042-143012076:+:L1PA2:REF | L1PA2 | REF | full-length | KYNU | 0.08 |
0.98 |
0.96 |
0.98 |
0.55 |
0.81 |
0.98 |
0.93 |
0.98 |
0.96 |
0.96 |
0.98 |
chr2 | 143253223 | 143253225 | chr2:143253223-143253225:+:L1HS:NONREF | L1HS | KNR | — | ARHGAP15 | — | 0.93 |
— | 0.81 |
— | 0.86 |
— | 0.92 |
— | 0.96 |
— | — |
chr2 | 143536378 | 143542524 | chr2:143536378-143542524:-:L1PA4:REF | L1PA4 | REF | full-length | ARHGAP15 | 0.24 |
0.62 |
0.87 |
0.69 |
0.79 |
0.95 |
0.64 |
0.83 |
0.83 |
0.87 |
0.89 |
0.92 |
chr2 | 143661562 | 143667611 | chr2:143661562-143667611:+:L1PA2:REF | L1PA2 | REF | full-length | ARHGAP15 | 0.31 |
0.88 |
0.92 |
0.75 |
0.87 |
0.89 |
0.4 |
0.93 |
0.96 |
0.91 |
0.93 |
0.98 |
chr2 | 143860956 | 143866987 | chr2:143860956-143866987:+:L1HS:REF | L1HS | REF | full-length | — | 0.67 |
0.94 |
0.98 |
0.87 |
0.21 |
0.96 |
0.84 |
0.98 |
0.96 |
0.96 |
0.98 |
0.98 |
chr2 | 144104121 | 144108357 | chr2:144104121-144108357:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | GTDC1 | 0.78 |
0.97 |
0.98 |
0.76 |
0.93 |
0.94 |
0.54 |
0.94 |
0.96 |
0.91 |
0.96 |
0.97 |
chr2 | 144897598 | 144903603 | chr2:144897598-144903603:-:L1PA2:REF | L1PA2 | REF | full-length | TEX41 | 0.89 |
— | 0.97 |
0.92 |
0.09 |
0.96 |
0.8 |
0.95 |
0.88 |
0.95 |
0.97 |
0.99 |
chr2 | 146405741 | 146411341 | chr2:146405741-146411341:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.36 |
0.78 |
0.76 |
0.65 |
0.87 |
0.81 |
0.94 |
0.93 |
0.01 |
0.93 |
0.95 |
chr2 | 147580469 | 147586902 | chr2:147580469-147586902:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.83 |
0.77 |
0.05 |
0.83 |
0.66 |
0.05 |
0.72 |
0.95 |
0.78 |
0.56 |
0.93 |
chr2 | 147727004 | 147733028 | chr2:147727004-147733028:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.89 |
0.87 |
0.7 |
0.15 |
0.85 |
0.79 |
0.82 |
0.86 |
0.83 |
0.83 |
0.94 |
chr2 | 148148940 | 148154956 | chr2:148148940-148154956:-:L1PA2:REF | L1PA2 | REF | full-length | MBD5 | 0.22 |
0.39 |
0.85 |
0.95 |
0.84 |
0.92 |
0.85 |
0.93 |
0.86 |
0.85 |
0.87 |
0.82 |
chr2 | 148188745 | 148194773 | chr2:148188745-148194773:+:L1HS:REF | L1HS | REF | full-length | MBD5 | 0.72 |
0.9 |
0.84 |
0.9 |
0.15 |
0.91 |
0.86 |
0.91 |
0.87 |
0.85 |
0.88 |
0.88 |
chr2 | 148322844 | 148328854 | chr2:148322844-148328854:-:L1PA3:REF | L1PA3 | REF | full-length | MBD5 | 0.03 |
0.92 |
0.95 |
0.98 |
0.92 |
0.98 |
0.94 |
0.99 |
0.97 |
0.95 |
0.98 |
0.98 |
chr2 | 149501242 | 149507406 | chr2:149501242-149507406:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.67 |
0.96 |
0.76 |
0.49 |
0.88 |
0.49 |
0.9 |
0.94 |
0.9 |
0.86 |
0.97 |