Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 5376541 | 5377480 | chr3:5376541-5377480:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.03 |
— | — | — | — | 0.55 |
0.79 |
— | — | 0.31 |
0.58 |
— |
chr3 | 5590805 | 5596951 | chr3:5590805-5596951:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.72 |
0.46 |
0.71 |
0.16 |
0.87 |
0.62 |
0.83 |
0.72 |
0.98 |
0.4 |
0.71 |
0.53 |
chr3 | 6266919 | 6273034 | chr3:6266919-6273034:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.56 |
0.45 |
0.45 |
0.88 |
0.71 |
0.69 |
0.8 |
0.94 |
0.32 |
0.75 |
0.91 |
chr3 | 6484911 | 6490929 | chr3:6484911-6490929:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.55 |
0.85 |
0.77 |
0.08 |
0.83 |
0.41 |
0.75 |
0.92 |
0.51 |
0.83 |
0.95 |
chr3 | 6764136 | 6770100 | chr3:6764136-6770100:-:L1PA3:REF | L1PA3 | REF | full-length | GRM7-AS3 | 0.0 |
0.57 |
0.79 |
0.75 |
0.08 |
— | 0.69 |
0.78 |
0.81 |
0.28 |
0.79 |
0.95 |
chr3 | 6945054 | 6951190 | chr3:6945054-6951190:-:L1PA4:REF | L1PA4 | REF | full-length | GRM7 | 0.02 |
0.43 |
0.74 |
0.41 |
0.86 |
0.69 |
0.56 |
0.73 |
0.96 |
0.38 |
0.65 |
0.97 |
chr3 | 7903494 | 7906799 | chr3:7903494-7906799:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.02 |
0.28 |
0.03 |
0.88 |
0.23 |
0.0 |
0.15 |
0.94 |
0.0 |
0.25 |
0.98 |
chr3 | 8611524 | 8617535 | chr3:8611524-8617535:+:L1PA3:REF | L1PA3 | REF | full-length | SSUH2 | 0.14 |
0.56 |
0.98 |
0.86 |
0.33 |
0.91 |
0.84 |
0.89 |
— | 0.9 |
0.95 |
0.96 |
chr3 | 8716076 | 8722097 | chr3:8716076-8722097:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.29 |
0.89 |
0.84 |
0.8 |
0.49 |
0.8 |
0.72 |
— | — | 0.74 |
0.89 |
0.87 |
chr3 | 11488672 | 11492490 | chr3:11488672-11492490:-:L1HS:REF | L1HS | REF | 3prime-truncated | ATG7 | 0.84 |
0.95 |
0.98 |
0.96 |
0.93 |
0.97 |
0.93 |
0.96 |
0.95 |
0.94 |
0.97 |
0.97 |
chr3 | 15186665 | 15192699 | chr3:15186665-15192699:+:L1PA3:REF | L1PA3 | REF | full-length | COL6A4P1 | 0.02 |
0.19 |
0.97 |
0.26 |
0.46 |
0.83 |
0.82 |
0.86 |
0.95 |
0.15 |
0.86 |
0.31 |
chr3 | 16158871 | 16164990 | chr3:16158871-16164990:-:L1PA6:REF | L1PA6 | REF | full-length | GALNT15 | 0.01 |
0.7 |
0.44 |
0.56 |
0.6 |
0.76 |
0.03 |
0.88 |
— | 0.06 |
0.8 |
— |
chr3 | 16676612 | 16682753 | chr3:16676612-16682753:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.79 |
0.87 |
0.85 |
0.93 |
0.84 |
0.56 |
0.67 |
0.91 |
0.89 |
0.76 |
0.71 |
chr3 | 17693113 | 17697953 | chr3:17693113-17697953:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | TBC1D5 | 0.29 |
0.42 |
0.98 |
0.99 |
0.83 |
0.98 |
0.94 |
0.98 |
0.98 |
0.72 |
0.83 |
0.98 |
chr3 | 17858274 | 17861391 | chr3:17858274-17861391:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.13 |
0.96 |
0.07 |
0.86 |
0.01 |
0.9 |
0.93 |
0.9 |
0.65 |
0.86 |
0.9 |
0.57 |
chr3 | 18328056 | 18331287 | chr3:18328056-18331287:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.82 |
0.45 |
0.09 |
0.81 |
0.03 |
0.86 |
0.87 |
0.23 |
0.79 |
0.97 |
chr3 | 18516080 | 18520244 | chr3:18516080-18520244:+:L1HS:REF | L1HS | REF | 3prime-truncated | SATB1-AS1 | 0.02 |
0.42 |
0.85 |
0.21 |
0.11 |
0.51 |
0.49 |
0.5 |
0.71 |
0.08 |
0.53 |
0.66 |
chr3 | 18692573 | 18694307 | chr3:18692573-18694307:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.03 |
0.55 |
0.81 |
0.54 |
0.06 |
0.78 |
0.5 |
0.75 |
0.87 |
0.35 |
0.75 |
0.75 |
chr3 | 18930482 | 18936506 | chr3:18930482-18936506:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.65 |
0.87 |
0.6 |
0.06 |
0.8 |
0.86 |
0.83 |
0.84 |
0.66 |
0.8 |
0.85 |
chr3 | 18957806 | 18963833 | chr3:18957806-18963833:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.88 |
0.79 |
0.57 |
0.04 |
0.74 |
0.71 |
0.74 |
0.81 |
0.6 |
0.74 |
0.81 |
chr3 | 18975949 | 18982086 | chr3:18975949-18982086:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.08 |
0.68 |
— | 0.59 |
— | 0.61 |
— | — | 0.35 |
0.66 |
0.43 |
chr3 | 19097368 | 19103347 | chr3:19097368-19103347:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.13 |
0.74 |
0.41 |
0.08 |
0.28 |
0.39 |
0.61 |
0.52 |
0.4 |
0.65 |
0.78 |
chr3 | 19370610 | 19376625 | chr3:19370610-19376625:-:L1PA2:REF | L1PA2 | REF | full-length | KCNH8 | 0.02 |
0.39 |
0.63 |
0.42 |
0.21 |
0.67 |
0.76 |
0.78 |
0.93 |
0.52 |
0.66 |
0.75 |
chr3 | 19855048 | 19861075 | chr3:19855048-19861075:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.28 |
0.69 |
0.9 |
0.9 |
0.09 |
0.84 |
0.88 |
0.9 |
0.94 |
0.76 |
0.88 |
0.91 |
chr3 | 21249724 | 21255755 | chr3:21249724-21255755:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.17 |
— | 0.62 |
0.53 |
0.93 |
0.95 |
0.44 |
0.94 |
— | 0.45 |
0.79 |
0.75 |
chr3 | 21364853 | 21367295 | chr3:21364853-21367295:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.08 |
0.44 |
0.33 |
0.15 |
0.87 |
0.85 |
0.26 |
0.65 |
0.88 |
0.03 |
0.52 |
0.21 |
chr3 | 22082078 | 22086635 | chr3:22082078-22086635:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.26 |
0.65 |
0.54 |
0.82 |
0.58 |
0.13 |
0.43 |
0.87 |
0.14 |
0.39 |
0.18 |
chr3 | 22737735 | 22743754 | chr3:22737735-22743754:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.01 |
0.89 |
0.44 |
0.2 |
0.8 |
0.83 |
0.82 |
0.91 |
0.47 |
0.8 |
0.88 |
chr3 | 22801378 | 22807403 | chr3:22801378-22807403:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.54 |
0.81 |
0.7 |
0.1 |
0.68 |
0.55 |
0.69 |
0.7 |
0.21 |
0.68 |
0.61 |
chr3 | 23030417 | 23036543 | chr3:23030417-23036543:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.04 |
0.94 |
0.22 |
0.72 |
0.79 |
0.17 |
0.75 |
0.95 |
0.82 |
0.67 |
0.95 |
chr3 | 23349243 | 23355385 | chr3:23349243-23355385:+:L1PA3:REF | L1PA3 | REF | full-length | UBE2E2 | 0.02 |
0.98 |
0.97 |
0.99 |
0.94 |
0.98 |
0.86 |
0.98 |
0.96 |
0.97 |
0.98 |
0.97 |
chr3 | 24089454 | 24095487 | chr3:24089454-24095487:-:L1PA2:REF | L1PA2 | REF | full-length | LINC00691 | 0.49 |
0.94 |
0.97 |
0.95 |
0.09 |
0.97 |
0.93 |
0.96 |
0.95 |
0.63 |
0.98 |
0.98 |
chr3 | 25199455 | 25205563 | chr3:25199455-25205563:-:L1PA4:REF | L1PA4 | REF | full-length | RARB | 0.01 |
0.56 |
0.8 |
0.19 |
0.88 |
0.73 |
0.35 |
0.68 |
0.86 |
0.73 |
0.69 |
0.26 |
chr3 | 26036528 | 26042769 | chr3:26036528-26042769:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.49 |
0.58 |
0.15 |
0.88 |
0.61 |
0.3 |
0.67 |
0.91 |
0.44 |
0.65 |
0.7 |
chr3 | 26239082 | 26245212 | chr3:26239082-26245212:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.02 |
0.74 |
0.14 |
0.92 |
0.57 |
0.62 |
0.76 |
— | 0.28 |
0.69 |
— |
chr3 | 26384735 | 26390767 | chr3:26384735-26390767:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.63 |
0.81 |
0.74 |
0.05 |
0.83 |
0.79 |
0.77 |
0.86 |
0.56 |
0.72 |
0.9 |
chr3 | 26398017 | 26404045 | chr3:26398017-26404045:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.18 |
0.78 |
0.59 |
0.28 |
0.72 |
0.57 |
0.73 |
0.86 |
0.45 |
0.77 |
0.78 |
chr3 | 26783096 | 26789130 | chr3:26783096-26789130:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.71 |
— | — | 0.66 |
0.81 |
0.69 |
0.76 |
— | 0.55 |
0.79 |
0.8 |
chr3 | 26881365 | 26887510 | chr3:26881365-26887510:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.32 |
0.41 |
0.17 |
0.86 |
0.59 |
0.27 |
0.6 |
0.92 |
0.09 |
0.68 |
0.64 |
chr3 | 27262107 | 27263952 | chr3:27262107-27263952:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | NEK10 | 0.01 |
0.71 |
0.88 |
0.79 |
0.88 |
0.91 |
0.96 |
0.92 |
0.94 |
0.56 |
0.97 |
0.96 |
chr3 | 27815983 | 27821983 | chr3:27815983-27821983:-:L1PA7:REF | L1PA7 | REF | full-length | LINC01980 | 0.02 |
0.87 |
0.96 |
0.88 |
0.11 |
0.79 |
0.85 |
0.86 |
0.76 |
0.11 |
0.84 |
0.98 |
chr3 | 28059242 | 28065270 | chr3:28059242-28065270:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
— | 0.9 |
0.81 |
0.02 |
0.86 |
0.87 |
0.89 |
0.83 |
0.09 |
0.87 |
0.43 |
chr3 | 29108111 | 29112113 | chr3:29108111-29112113:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.67 |
0.97 |
0.68 |
0.16 |
0.92 |
0.77 |
0.97 |
0.96 |
0.84 |
0.98 |
0.97 |
chr3 | 29993917 | 29999918 | chr3:29993917-29999918:+:L1PA4:REF | L1PA4 | REF | full-length | RBMS3 | — | 0.97 |
0.95 |
0.79 |
0.86 |
0.96 |
0.86 |
0.9 |
0.96 |
0.94 |
0.98 |
0.98 |
chr3 | 30049918 | 30050507 | chr3:30049918-30050507:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.05 |
0.9 |
0.95 |
0.88 |
0.9 |
0.94 |
0.93 |
0.95 |
0.98 |
0.93 |
0.95 |
0.98 |
chr3 | 30213408 | 30216503 | chr3:30213408-30216503:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.92 |
0.89 |
0.78 |
0.92 |
0.97 |
0.78 |
0.78 |
0.97 |
0.56 |
0.77 |
0.79 |
chr3 | 32010453 | 32016606 | chr3:32010453-32016606:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.98 |
0.95 |
0.87 |
0.92 |
0.77 |
0.87 |
0.83 |
0.97 |
0.91 |
0.84 |
0.96 |
chr3 | 33281055 | 33287153 | chr3:33281055-33287153:-:L1PA5:REF | L1PA5 | REF | full-length | FBXL2 | — | 0.98 |
0.98 |
0.98 |
0.92 |
0.98 |
0.92 |
0.99 |
0.97 |
0.97 |
0.99 |
0.99 |
chr3 | 33671454 | 33677714 | chr3:33671454-33677714:+:L1PA3:REF | L1PA3 | REF | full-length | CLASP2 | 0.92 |
0.98 |
0.99 |
1.0 |
0.94 |
0.99 |
0.99 |
0.93 |
— | 0.95 |
0.97 |
0.99 |
chr3 | 34079711 | 34085844 | chr3:34079711-34085844:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.9 |
0.82 |
0.36 |
0.84 |
0.65 |
0.41 |
0.71 |
0.93 |
0.11 |
0.57 |
0.59 |