Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 34094086 | 34100223 | chr3:34094086-34100223:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.08 |
0.92 |
0.36 |
0.23 |
0.84 |
0.44 |
0.17 |
0.46 |
0.84 |
0.14 |
0.5 |
0.2 |
chr3 | 34413126 | 34419172 | chr3:34413126-34419172:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.87 |
0.81 |
0.78 |
0.1 |
0.8 |
0.88 |
0.84 |
0.87 |
0.76 |
0.87 |
0.83 |
chr3 | 34427736 | 34433885 | chr3:34427736-34433885:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.75 |
0.59 |
0.21 |
0.92 |
0.59 |
0.17 |
0.62 |
0.9 |
0.25 |
0.58 |
0.65 |
chr3 | 35225817 | 35231938 | chr3:35225817-35231938:+:L1PA4:REF | L1PA4 | REF | full-length | LOC101928135 | 0.03 |
0.92 |
0.88 |
0.53 |
0.91 |
0.74 |
0.71 |
0.74 |
0.96 |
0.49 |
0.77 |
0.73 |
chr3 | 35454617 | 35458296 | chr3:35454617-35458296:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.91 |
0.85 |
0.46 |
0.93 |
0.66 |
0.64 |
0.64 |
0.96 |
0.45 |
0.58 |
— |
chr3 | 35818653 | 35824692 | chr3:35818653-35824692:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.72 |
0.9 |
0.59 |
0.89 |
0.76 |
0.86 |
0.77 |
0.96 |
0.5 |
0.7 |
0.78 |
chr3 | 38405400 | 38411538 | chr3:38405400-38411538:+:L1PA3:REF | L1PA3 | REF | full-length | XYLB | 0.73 |
0.97 |
0.98 |
0.99 |
0.78 |
0.86 |
0.88 |
0.99 |
0.85 |
0.98 |
0.74 |
0.98 |
chr3 | 38932236 | 38938390 | chr3:38932236-38938390:+:L1PA3:REF | L1PA3 | REF | full-length | SCN11A | 0.01 |
0.77 |
0.66 |
0.49 |
0.81 |
0.57 |
0.57 |
0.76 |
0.83 |
0.49 |
0.76 |
0.6 |
chr3 | 39304219 | 39309843 | chr3:39304219-39309843:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.02 |
0.9 |
0.72 |
0.04 |
0.82 |
0.52 |
0.11 |
0.3 |
0.89 |
0.2 |
0.47 |
0.64 |
chr3 | 39550909 | 39557348 | chr3:39550909-39557348:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.54 |
0.61 |
— | 0.83 |
0.31 |
0.12 |
0.38 |
0.84 |
0.35 |
0.35 |
0.68 |
chr3 | 39839557 | 39842926 | chr3:39839557-39842926:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MYRIP | 0.02 |
0.98 |
0.84 |
0.28 |
0.87 |
0.42 |
0.64 |
0.23 |
0.9 |
0.22 |
0.25 |
0.82 |
chr3 | 39953562 | 39959686 | chr3:39953562-39959686:+:L1PA5:REF | L1PA5 | REF | full-length | MYRIP | 0.01 |
0.94 |
0.88 |
0.09 |
0.87 |
0.72 |
0.84 |
0.52 |
0.96 |
0.14 |
0.47 |
0.62 |
chr3 | 39994053 | 39999999 | chr3:39994053-39999999:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | MYRIP | 0.02 |
0.85 |
0.82 |
0.56 |
0.88 |
0.85 |
0.84 |
0.76 |
0.96 |
0.27 |
0.67 |
0.78 |
chr3 | 40154990 | 40161029 | chr3:40154990-40161029:-:L1PA3:REF | L1PA3 | REF | full-length | MYRIP | 0.1 |
0.95 |
0.93 |
0.86 |
0.91 |
0.89 |
0.85 |
0.79 |
0.86 |
0.65 |
0.69 |
0.94 |
chr3 | 40240315 | 40240603 | chr3:40240315-40240603:+:L1P1:REF | L1P1 | REF | 3prime-truncated | MYRIP | 0.22 |
0.95 |
0.86 |
0.41 |
— | 0.78 |
0.84 |
0.75 |
0.94 |
0.61 |
0.73 |
0.96 |
chr3 | 40902374 | 40908432 | chr3:40902374-40908432:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.94 |
0.95 |
0.77 |
0.28 |
0.67 |
0.96 |
0.67 |
0.35 |
0.82 |
0.73 |
0.87 |
chr3 | 40953869 | 40960021 | chr3:40953869-40960021:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.97 |
0.95 |
0.85 |
0.77 |
0.82 |
0.78 |
0.76 |
0.97 |
0.76 |
0.74 |
0.89 |
chr3 | 41370356 | 41376413 | chr3:41370356-41376413:+:L1PA7:REF | L1PA7 | REF | full-length | ULK4 | 0.0 |
0.89 |
0.63 |
0.68 |
0.85 |
0.65 |
0.79 |
0.72 |
0.83 |
0.66 |
0.64 |
0.96 |
chr3 | 41616351 | 41622775 | chr3:41616351-41622775:+:L1PA8:REF | L1PA8 | REF | full-length | ULK4 | 0.01 |
1.0 |
0.92 |
0.87 |
0.83 |
0.8 |
0.95 |
0.6 |
0.91 |
0.88 |
0.76 |
0.95 |
chr3 | 41642194 | 41648350 | chr3:41642194-41648350:-:L1PA4:REF | L1PA4 | REF | full-length | ULK4 | 0.08 |
0.97 |
0.96 |
0.95 |
0.92 |
0.94 |
0.96 |
0.96 |
0.96 |
0.94 |
0.96 |
0.98 |
chr3 | 43064774 | 43070790 | chr3:43064774-43070790:+:L1PA2:REF | L1PA2 | REF | full-length | GASK1A | 0.15 |
0.91 |
0.96 |
0.76 |
0.89 |
0.84 |
0.85 |
0.9 |
0.91 |
0.87 |
0.92 |
0.97 |
chr3 | 43565822 | 43571847 | chr3:43565822-43571847:+:L1PA2:REF | L1PA2 | REF | full-length | ANO10 | 0.01 |
0.28 |
0.97 |
0.97 |
0.13 |
0.97 |
0.98 |
0.97 |
0.79 |
0.05 |
0.99 |
0.05 |
chr3 | 43659085 | 43660672 | chr3:43659085-43660672:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | ANO10 | 0.44 |
— | — | — | — | — | 0.35 |
— | — | 0.76 |
0.41 |
— |
chr3 | 43678954 | 43685094 | chr3:43678954-43685094:+:L1PA4:REF | L1PA4 | REF | full-length | ANO10 | 0.77 |
0.98 |
0.99 |
0.96 |
0.92 |
0.93 |
0.72 |
0.92 |
0.95 |
0.96 |
0.97 |
0.98 |
chr3 | 46783105 | 46789138 | chr3:46783105-46789138:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.86 |
0.93 |
0.6 |
0.21 |
0.81 |
0.88 |
0.88 |
0.88 |
0.82 |
0.84 |
0.93 |
chr3 | 50921202 | 50922670 | chr3:50921202-50922670:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | DOCK3 | 0.0 |
— | — | 0.24 |
0.67 |
0.45 |
0.22 |
0.39 |
— | 0.79 |
0.37 |
— |
chr3 | 50973137 | 50979172 | chr3:50973137-50979172:-:L1PA3:REF | L1PA3 | REF | full-length | DOCK3 | 0.24 |
0.83 |
0.94 |
0.9 |
0.05 |
0.84 |
0.91 |
0.89 |
0.91 |
0.0 |
0.84 |
0.98 |
chr3 | 51091710 | 51092830 | chr3:51091710-51092830:+:L1P3:REF | L1P3 | REF | 3prime-truncated | DOCK3 | 0.0 |
— | 0.96 |
— | 0.93 |
0.72 |
0.95 |
0.62 |
— | 0.95 |
0.75 |
0.98 |
chr3 | 51199048 | 51205178 | chr3:51199048-51205178:+:L1PA3:REF | L1PA3 | REF | full-length | DOCK3 | 0.01 |
0.66 |
0.82 |
0.55 |
0.89 |
0.78 |
0.74 |
0.83 |
0.94 |
0.92 |
0.8 |
0.98 |
chr3 | 51368115 | 51369569 | chr3:51368115-51369569:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | DOCK3 | 0.01 |
— | — | 0.63 |
0.82 |
0.47 |
0.08 |
0.3 |
0.91 |
0.62 |
0.58 |
0.88 |
chr3 | 53365276 | 53371325 | chr3:53365276-53371325:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.56 |
0.23 |
0.94 |
0.94 |
0.13 |
0.88 |
0.93 |
0.92 |
0.89 |
0.39 |
0.94 |
0.97 |
chr3 | 53440758 | 53446902 | chr3:53440758-53446902:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
— | — | 0.35 |
0.7 |
0.59 |
0.8 |
0.48 |
— | 0.73 |
0.6 |
0.7 |
chr3 | 53921747 | 53927805 | chr3:53921747-53927805:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.55 |
0.95 |
0.0 |
0.03 |
0.88 |
0.53 |
0.88 |
0.94 |
0.01 |
0.86 |
0.47 |
chr3 | 54284955 | 54291072 | chr3:54284955-54291072:+:L1PA4:REF | L1PA4 | REF | full-length | CACNA2D3 | 0.01 |
0.96 |
0.97 |
0.89 |
0.95 |
0.85 |
0.68 |
0.82 |
0.97 |
0.93 |
0.76 |
0.89 |
chr3 | 54394322 | 54400323 | chr3:54394322-54400323:-:L1HS:REF | L1HS | REF | full-length | CACNA2D3 | 0.03 |
0.86 |
0.93 |
0.9 |
0.55 |
0.79 |
0.63 |
0.78 |
0.95 |
0.91 |
0.78 |
0.84 |
chr3 | 54458770 | 54464920 | chr3:54458770-54464920:-:L1PA3:REF | L1PA3 | REF | full-length | CACNA2D3 | 0.17 |
0.77 |
0.95 |
0.91 |
0.72 |
0.85 |
0.76 |
0.87 |
0.87 |
0.85 |
0.79 |
0.88 |
chr3 | 54468131 | 54474552 | chr3:54468131-54474552:+:L1PA7:REF | L1PA7 | REF | full-length | CACNA2D3 | 0.0 |
0.66 |
0.9 |
0.9 |
0.85 |
0.68 |
0.55 |
0.64 |
0.87 |
0.74 |
0.58 |
0.62 |
chr3 | 55046104 | 55052129 | chr3:55046104-55052129:-:L1PA2:REF | L1PA2 | REF | full-length | CACNA2D3 | 0.02 |
0.85 |
0.89 |
0.96 |
0.78 |
0.94 |
0.51 |
0.95 |
0.96 |
0.85 |
0.97 |
0.74 |
chr3 | 55754551 | 55754553 | chr3:55754551-55754553:+:L1HS:NONREF | L1HS | KNR | — | ERC2 | 0.02 |
0.95 |
0.98 |
— | 0.02 |
0.92 |
— | 0.94 |
— | 0.56 |
— | 0.88 |
chr3 | 55831626 | 55837762 | chr3:55831626-55837762:+:L1PA4:REF | L1PA4 | REF | full-length | ERC2 | 0.04 |
0.97 |
0.96 |
0.93 |
0.79 |
0.91 |
0.33 |
0.84 |
0.84 |
0.86 |
0.79 |
0.95 |
chr3 | 56213069 | 56219149 | chr3:56213069-56219149:+:L1PA4:REF | L1PA4 | REF | full-length | ERC2 | 0.01 |
0.9 |
0.96 |
0.45 |
0.91 |
0.83 |
0.5 |
0.76 |
0.9 |
0.8 |
0.79 |
0.58 |
chr3 | 56945132 | 56951290 | chr3:56945132-56951290:+:L1PA4:REF | L1PA4 | REF | full-length | ARHGEF3 | 0.03 |
0.97 |
0.95 |
0.95 |
0.93 |
0.84 |
0.97 |
0.87 |
0.97 |
0.93 |
0.89 |
0.98 |
chr3 | 57324583 | 57330726 | chr3:57324583-57330726:+:L1PA3:REF | L1PA3 | REF | full-length | DNAH12 | 0.42 |
0.96 |
0.91 |
0.77 |
0.91 |
0.83 |
0.85 |
0.83 |
0.92 |
0.93 |
0.86 |
0.98 |
chr3 | 57476938 | 57483084 | chr3:57476938-57483084:+:L1PA4:REF | L1PA4 | REF | full-length | DNAH12 | — | — | — | — | 0.62 |
— | — | — | — | 0.61 |
0.5 |
0.59 |
chr3 | 58758539 | 58764668 | chr3:58758539-58764668:-:L1PA4:REF | L1PA4 | REF | full-length | C3orf67 | 0.98 |
0.93 |
0.86 |
0.43 |
0.93 |
0.87 |
0.44 |
0.85 |
0.98 |
0.84 |
0.91 |
0.98 |
chr3 | 58806577 | 58812715 | chr3:58806577-58812715:+:L1PA3:REF | L1PA3 | REF | full-length | C3orf67 | 0.95 |
0.93 |
0.96 |
0.56 |
0.9 |
0.91 |
0.74 |
0.92 |
0.97 |
0.89 |
0.93 |
0.96 |
chr3 | 58816278 | 58822304 | chr3:58816278-58822304:+:L1PA2:REF | L1PA2 | REF | full-length | C3orf67 | 0.91 |
0.93 |
0.94 |
0.79 |
0.67 |
0.95 |
0.81 |
0.91 |
0.96 |
0.87 |
0.95 |
0.96 |
chr3 | 58842154 | 58848179 | chr3:58842154-58848179:+:L1PA2:REF | L1PA2 | REF | full-length | C3orf67 | 0.0 |
0.92 |
0.94 |
0.78 |
0.08 |
0.97 |
0.79 |
0.95 |
0.82 |
0.9 |
0.97 |
0.98 |
chr3 | 58930787 | 58936933 | chr3:58930787-58936933:+:L1PA3:REF | L1PA3 | REF | full-length | C3orf67 | — | — | 0.82 |
0.53 |
0.81 |
0.98 |
0.6 |
0.87 |
0.95 |
0.92 |
0.95 |
0.98 |
chr3 | 59613855 | 59619953 | chr3:59613855-59619953:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.92 |
0.97 |
0.15 |
— | 0.79 |
0.43 |
0.82 |
0.94 |
0.9 |
0.91 |
0.83 |