Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 184208227 | 184214253 | chr4:184208227-184214253:+:L1PA3:REF | L1PA3 | REF | full-length | ENPP6 | 0.55 |
— | 0.97 |
— | — | — | 0.68 |
— | — | 0.36 |
0.92 |
0.98 |
chr4 | 186110393 | 186116420 | chr4:186110393-186116420:-:L1PA2:REF | L1PA2 | REF | full-length | FAM149A | 0.28 |
0.86 |
0.97 |
0.83 |
0.17 |
0.78 |
0.53 |
0.88 |
0.84 |
0.96 |
0.91 |
0.93 |
chr4 | 187050521 | 187056650 | chr4:187050521-187056650:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.97 |
0.93 |
0.67 |
0.96 |
0.85 |
0.77 |
0.93 |
0.98 |
0.88 |
0.95 |
0.97 |
chr4 | 187856785 | 187862920 | chr4:187856785-187862920:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.77 |
0.88 |
0.66 |
0.82 |
0.74 |
0.59 |
0.94 |
0.96 |
0.78 |
0.85 |
0.94 |
chr4 | 188558269 | 188564287 | chr4:188558269-188564287:-:L1PA2:REF | L1PA2 | REF | full-length | LINC01060 | 0.03 |
0.97 |
0.95 |
0.96 |
0.96 |
0.9 |
0.87 |
0.93 |
0.95 |
0.85 |
0.91 |
0.98 |
chr5 | 60128 | 66259 | chr5:60128-66259:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
— | 0.76 |
0.33 |
— | — | 0.2 |
— | — | 0.17 |
0.62 |
— |
chr5 | 1709818 | 1715835 | chr5:1709818-1715835:+:L1PA3:REF | L1PA3 | REF | full-length | MIR4277 | 0.24 |
0.92 |
0.92 |
0.81 |
0.25 |
0.37 |
0.8 |
0.2 |
0.38 |
0.79 |
0.38 |
0.95 |
chr5 | 3439025 | 3445063 | chr5:3439025-3445063:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01019 | 0.26 |
0.68 |
0.78 |
0.59 |
0.92 |
0.82 |
0.39 |
0.84 |
0.96 |
0.59 |
0.76 |
0.74 |
chr5 | 3667322 | 3670373 | chr5:3667322-3670373:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
— | 0.45 |
0.0 |
— | 0.33 |
0.19 |
0.0 |
— | 0.0 |
0.3 |
0.12 |
chr5 | 4500001 | 4502372 | chr5:4500001-4502372:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.42 |
0.86 |
0.61 |
0.24 |
0.77 |
0.66 |
0.75 |
0.94 |
0.43 |
0.72 |
0.85 |
chr5 | 4615428 | 4621437 | chr5:4615428-4621437:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.23 |
0.84 |
0.55 |
0.07 |
0.67 |
0.67 |
0.74 |
— | 0.15 |
0.71 |
0.69 |
chr5 | 6646413 | 6649889 | chr5:6646413-6649889:-:L1P2:REF | L1P2 | REF | 3prime-truncated | SRD5A1 | 0.51 |
0.98 |
0.98 |
0.98 |
0.92 |
0.98 |
0.99 |
— | — | 0.99 |
0.91 |
0.82 |
chr5 | 6966278 | 6967323 | chr5:6966278-6967323:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.02 |
0.46 |
0.8 |
0.71 |
0.05 |
— | 0.76 |
0.84 |
0.84 |
0.56 |
0.7 |
0.8 |
chr5 | 7193769 | 7199795 | chr5:7193769-7199795:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.64 |
0.77 |
0.44 |
0.37 |
0.67 |
0.61 |
0.69 |
0.81 |
0.33 |
0.62 |
0.68 |
chr5 | 7230590 | 7236733 | chr5:7230590-7236733:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.52 |
0.44 |
0.3 |
0.82 |
— | 0.32 |
— | — | 0.07 |
0.45 |
0.29 |
chr5 | 8084215 | 8090244 | chr5:8084215-8090244:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.15 |
0.75 |
— | 0.82 |
0.64 |
0.35 |
0.72 |
0.93 |
0.43 |
0.68 |
0.84 |
chr5 | 8730856 | 8736988 | chr5:8730856-8736988:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.24 |
0.68 |
0.16 |
0.89 |
0.96 |
0.37 |
0.97 |
0.93 |
0.05 |
0.96 |
0.26 |
chr5 | 10002400 | 10005167 | chr5:10002400-10005167:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
— | 0.78 |
— | 0.84 |
— | — | — | — | 0.09 |
0.89 |
— |
chr5 | 10011064 | 10017180 | chr5:10011064-10017180:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.69 |
0.66 |
0.03 |
0.72 |
0.85 |
0.01 |
0.88 |
0.88 |
0.02 |
0.95 |
0.88 |
chr5 | 10093295 | 10093942 | chr5:10093295-10093942:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.85 |
0.75 |
0.13 |
0.91 |
0.8 |
0.04 |
0.73 |
0.94 |
0.14 |
0.66 |
0.95 |
chr5 | 10779977 | 10781229 | chr5:10779977-10781229:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.29 |
0.87 |
0.79 |
0.56 |
0.85 |
0.81 |
0.76 |
— | 0.91 |
0.33 |
0.92 |
0.95 |
chr5 | 11666769 | 11673042 | chr5:11666769-11673042:-:L1PA7:REF | L1PA7 | REF | full-length | CTNND2 | 0.01 |
0.91 |
0.74 |
0.05 |
0.77 |
0.36 |
0.03 |
0.44 |
0.97 |
0.01 |
0.32 |
0.35 |
chr5 | 15291930 | 15298100 | chr5:15291930-15298100:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.64 |
0.39 |
0.31 |
0.85 |
0.88 |
0.36 |
0.84 |
0.94 |
0.11 |
0.8 |
0.37 |
chr5 | 15396123 | 15398085 | chr5:15396123-15398085:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.03 |
0.91 |
0.92 |
0.73 |
0.94 |
0.96 |
0.79 |
0.91 |
0.96 |
0.63 |
0.93 |
0.86 |
chr5 | 15906515 | 15912550 | chr5:15906515-15912550:-:L1HS:REF | L1HS | REF | full-length | FBXL7 | 0.04 |
0.89 |
0.88 |
0.59 |
0.14 |
0.97 |
0.85 |
0.97 |
0.79 |
0.73 |
0.98 |
0.85 |
chr5 | 16335410 | 16341440 | chr5:16335410-16341440:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.72 |
0.83 |
0.74 |
0.05 |
0.82 |
0.63 |
0.82 |
0.88 |
0.28 |
0.79 |
0.89 |
chr5 | 17749600 | 17755756 | chr5:17749600-17755756:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.87 |
0.77 |
0.82 |
0.85 |
0.69 |
0.41 |
0.79 |
0.89 |
0.4 |
0.64 |
0.97 |
chr5 | 19161336 | 19167360 | chr5:19161336-19167360:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.34 |
0.97 |
0.86 |
0.75 |
0.08 |
0.83 |
0.82 |
0.84 |
0.94 |
0.5 |
0.8 |
0.98 |
chr5 | 21107412 | 21113430 | chr5:21107412-21113430:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.68 |
0.83 |
0.79 |
0.08 |
0.83 |
0.86 |
0.8 |
— | 0.55 |
0.82 |
— |
chr5 | 24654721 | 24660895 | chr5:24654721-24660895:-:L1PA6:REF | L1PA6 | REF | full-length | CDH10 | 0.0 |
0.44 |
0.31 |
0.78 |
0.91 |
0.21 |
0.02 |
0.35 |
0.87 |
0.58 |
0.19 |
0.95 |
chr5 | 25077653 | 25083685 | chr5:25077653-25083685:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.16 |
0.86 |
— | 0.11 |
0.8 |
0.59 |
0.84 |
0.96 |
0.01 |
0.86 |
0.98 |
chr5 | 25113737 | 25119754 | chr5:25113737-25119754:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02228 | 0.12 |
0.42 |
0.65 |
0.87 |
0.23 |
0.77 |
0.66 |
0.79 |
0.89 |
0.72 |
0.86 |
0.95 |
chr5 | 25378529 | 25384556 | chr5:25378529-25384556:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.56 |
0.82 |
0.87 |
0.29 |
0.73 |
0.47 |
0.77 |
0.86 |
0.71 |
0.8 |
0.96 |
chr5 | 28798790 | 28804814 | chr5:28798790-28804814:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.38 |
0.77 |
0.85 |
0.87 |
0.59 |
0.8 |
0.72 |
0.8 |
0.95 |
0.8 |
0.86 |
0.88 |
chr5 | 29191266 | 29192108 | chr5:29191266-29192108:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.02 |
0.25 |
0.51 |
0.14 |
— | 0.74 |
0.21 |
0.64 |
0.67 |
0.09 |
0.75 |
0.98 |
chr5 | 30359046 | 30365384 | chr5:30359046-30365384:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
— | 0.42 |
0.81 |
— | 0.58 |
0.09 |
— | — | 0.05 |
0.67 |
— |
chr5 | 30423377 | 30429507 | chr5:30423377-30429507:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.05 |
0.6 |
0.92 |
0.24 |
0.67 |
0.45 |
0.82 |
0.71 |
0.4 |
0.81 |
0.96 |
chr5 | 30496098 | 30499978 | chr5:30496098-30499978:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.85 |
0.28 |
0.87 |
0.91 |
0.24 |
0.93 |
0.55 |
1.0 |
0.01 |
0.37 |
0.89 |
chr5 | 30817969 | 30823996 | chr5:30817969-30823996:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.6 |
0.84 |
0.71 |
0.24 |
0.82 |
0.6 |
0.94 |
0.97 |
0.58 |
0.93 |
0.89 |
chr5 | 33095903 | 33102047 | chr5:33095903-33102047:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.94 |
0.75 |
0.73 |
0.95 |
0.97 |
0.4 |
— | 0.96 |
0.31 |
0.97 |
0.93 |
chr5 | 33122370 | 33128395 | chr5:33122370-33128395:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.94 |
0.91 |
0.83 |
0.72 |
0.98 |
0.84 |
— | — | 0.61 |
0.97 |
0.99 |
chr5 | 33539828 | 33546021 | chr5:33539828-33546021:+:L1PA6:REF | L1PA6 | REF | full-length | ADAMTS12 | 0.01 |
0.94 |
0.82 |
0.4 |
0.91 |
0.96 |
0.67 |
0.91 |
0.9 |
0.63 |
0.98 |
0.85 |
chr5 | 33568655 | 33574761 | chr5:33568655-33574761:+:L1PA3:REF | L1PA3 | REF | full-length | ADAMTS12 | 0.01 |
0.85 |
0.86 |
0.44 |
0.93 |
0.92 |
0.77 |
0.95 |
0.96 |
0.44 |
0.98 |
0.81 |
chr5 | 34147845 | 34154031 | chr5:34147845-34154031:+:L1HS:REF | L1HS | REF | full-length | C1QTNF3 | 0.95 |
0.97 |
0.97 |
0.98 |
0.11 |
0.97 |
0.98 |
0.96 |
0.91 |
0.93 |
0.98 |
0.98 |
chr5 | 35075072 | 35081201 | chr5:35075072-35081201:+:L1PA5:REF | L1PA5 | REF | full-length | PRLR | 0.01 |
0.88 |
0.9 |
0.1 |
0.88 |
0.93 |
— | 0.83 |
0.77 |
0.41 |
0.89 |
0.54 |
chr5 | 35256058 | 35262086 | chr5:35256058-35262086:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.95 |
0.92 |
0.49 |
0.87 |
0.82 |
0.84 |
0.78 |
0.91 |
0.64 |
0.73 |
0.57 |
chr5 | 35396097 | 35402235 | chr5:35396097-35402235:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.95 |
0.63 |
0.37 |
0.9 |
0.8 |
0.69 |
— | 0.86 |
0.31 |
0.74 |
0.82 |
chr5 | 35494184 | 35500000 | chr5:35494184-35500000:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.9 |
0.92 |
0.69 |
0.95 |
0.87 |
0.95 |
0.85 |
0.96 |
0.62 |
0.84 |
0.84 |
chr5 | 35568225 | 35574246 | chr5:35568225-35574246:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.92 |
0.77 |
0.7 |
0.88 |
0.86 |
0.85 |
0.77 |
0.9 |
0.44 |
0.82 |
0.88 |
chr5 | 35911739 | 35917876 | chr5:35911739-35917876:+:L1PA4:REF | L1PA4 | REF | full-length | CAPSL | 0.0 |
0.83 |
0.91 |
0.71 |
0.87 |
0.72 |
0.49 |
0.72 |
0.97 |
0.4 |
0.72 |
0.73 |