Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 58109257 | 58115306 | chr12:58109257-58115306:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.86 |
0.74 |
0.66 |
0.87 |
0.8 |
0.58 |
0.76 |
0.93 |
0.37 |
0.77 |
0.96 |
chr12 | 58226938 | 58233087 | chr12:58226938-58233087:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.94 |
0.68 |
0.39 |
0.88 |
0.69 |
0.29 |
0.72 |
0.93 |
0.08 |
0.75 |
0.95 |
chr12 | 58471406 | 58477554 | chr12:58471406-58477554:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.97 |
0.93 |
0.95 |
0.98 |
0.8 |
0.97 |
0.99 |
0.6 |
0.98 |
0.98 |
chr12 | 58708188 | 58710506 | chr12:58708188-58710506:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LINC02388 | 0.01 |
0.88 |
0.53 |
0.13 |
0.85 |
0.88 |
0.39 |
0.87 |
0.91 |
0.24 |
0.84 |
0.96 |
chr12 | 59225285 | 59228476 | chr12:59225285-59228476:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.1 |
0.7 |
0.6 |
0.4 |
0.71 |
0.68 |
0.52 |
0.86 |
1.0 |
0.38 |
0.83 |
0.99 |
chr12 | 59751112 | 59757266 | chr12:59751112-59757266:+:L1PA3:REF | L1PA3 | REF | full-length | SLC16A7 | 0.05 |
0.97 |
0.89 |
0.9 |
0.91 |
0.97 |
0.84 |
0.96 |
0.92 |
0.67 |
0.95 |
0.94 |
chr12 | 60234374 | 60240761 | chr12:60234374-60240761:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.14 |
— | 0.46 |
— | — | — | 0.16 |
— | — | 0.03 |
0.91 |
0.95 |
chr12 | 61076393 | 61076652 | chr12:61076393-61076652:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.04 |
0.64 |
0.7 |
0.67 |
— | 0.61 |
0.44 |
0.58 |
0.34 |
0.7 |
0.69 |
0.72 |
chr12 | 61293783 | 61299916 | chr12:61293783-61299916:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.82 |
0.68 |
0.42 |
0.93 |
0.75 |
0.34 |
0.71 |
0.98 |
0.3 |
0.84 |
0.98 |
chr12 | 61414978 | 61421115 | chr12:61414978-61421115:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.96 |
0.66 |
0.48 |
0.9 |
0.67 |
0.7 |
0.74 |
0.91 |
0.35 |
0.78 |
0.94 |
chr12 | 61922306 | 61926790 | chr12:61922306-61926790:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | TAFA2 | 0.0 |
0.54 |
0.39 |
0.15 |
0.46 |
0.4 |
0.19 |
0.53 |
— | 0.16 |
0.49 |
— |
chr12 | 61941440 | 61947489 | chr12:61941440-61947489:+:L1PA2:REF | L1PA2 | REF | full-length | TAFA2 | 0.01 |
0.9 |
0.77 |
0.61 |
0.11 |
0.72 |
0.68 |
0.83 |
0.96 |
0.56 |
0.7 |
0.98 |
chr12 | 63165490 | 63168401 | chr12:63165490-63168401:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.23 |
— | 0.23 |
0.3 |
0.36 |
0.17 |
0.6 |
— | 0.19 |
0.4 |
— |
chr12 | 63336890 | 63343011 | chr12:63336890-63343011:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.74 |
0.89 |
0.12 |
0.81 |
0.49 |
0.16 |
0.5 |
0.9 |
0.81 |
0.49 |
0.98 |
chr12 | 63434166 | 63436476 | chr12:63434166-63436476:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.87 |
0.87 |
0.32 |
0.9 |
0.55 |
0.2 |
0.61 |
0.9 |
0.85 |
0.57 |
0.96 |
chr12 | 63628081 | 63634219 | chr12:63628081-63634219:+:L1PA4:REF | L1PA4 | REF | full-length | DPY19L2 | 0.01 |
0.89 |
0.95 |
0.67 |
0.83 |
0.94 |
0.18 |
0.93 |
— | 0.85 |
0.93 |
0.96 |
chr12 | 64195587 | 64201638 | chr12:64195587-64201638:+:L1PA2:REF | L1PA2 | REF | full-length | C12orf66 | 0.92 |
0.98 |
0.97 |
0.98 |
0.09 |
0.97 |
0.99 |
0.98 |
0.91 |
0.94 |
0.99 |
0.98 |
chr12 | 64287349 | 64293377 | chr12:64287349-64293377:-:L1PA2:REF | L1PA2 | REF | full-length | C12orf56 | 0.0 |
0.7 |
— | — | 0.03 |
— | 0.9 |
— | — | 0.72 |
— | — |
chr12 | 65555418 | 65555740 | chr12:65555418-65555740:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | LOC100507065 | — | — | — | — | 0.98 |
— | 0.96 |
0.95 |
— | 0.99 |
0.98 |
0.97 |
chr12 | 66521519 | 66527684 | chr12:66521519-66527684:+:L1PA4:REF | L1PA4 | REF | full-length | GRIP1 | 0.04 |
0.88 |
0.85 |
0.44 |
0.79 |
0.75 |
0.39 |
0.71 |
0.9 |
0.84 |
0.75 |
0.68 |
chr12 | 66578267 | 66584409 | chr12:66578267-66584409:+:L1PA3:REF | L1PA3 | REF | full-length | GRIP1 | 0.07 |
0.53 |
0.95 |
0.39 |
0.85 |
0.86 |
0.78 |
0.79 |
0.97 |
0.93 |
0.85 |
0.79 |
chr12 | 67843805 | 67849821 | chr12:67843805-67849821:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.64 |
0.9 |
0.63 |
0.93 |
0.92 |
0.78 |
0.89 |
0.98 |
0.76 |
0.92 |
0.93 |
chr12 | 67900208 | 67906224 | chr12:67900208-67906224:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.15 |
0.81 |
0.88 |
0.6 |
0.53 |
0.91 |
0.6 |
0.89 |
0.88 |
0.87 |
0.91 |
0.84 |
chr12 | 69773410 | 69779441 | chr12:69773410-69779441:-:L1HS:REF | L1HS | REF | full-length | RAB3IP | 0.45 |
0.63 |
0.93 |
0.9 |
0.02 |
0.85 |
0.98 |
0.91 |
0.85 |
0.92 |
0.9 |
0.98 |
chr12 | 70765020 | 70771163 | chr12:70765020-70771163:+:L1PA3:REF | L1PA3 | REF | full-length | PTPRR | 0.73 |
0.83 |
0.84 |
0.97 |
0.9 |
0.72 |
0.43 |
0.79 |
0.94 |
0.84 |
0.68 |
0.97 |
chr12 | 71118072 | 71124103 | chr12:71118072-71124103:+:L1PA2:REF | L1PA2 | REF | full-length | TSPAN8 | 0.02 |
0.72 |
0.92 |
0.91 |
0.31 |
0.82 |
0.91 |
0.85 |
0.73 |
0.86 |
0.81 |
0.91 |
chr12 | 72150397 | 72156542 | chr12:72150397-72156542:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.31 |
0.7 |
0.32 |
0.87 |
0.7 |
0.13 |
0.78 |
0.95 |
0.83 |
0.84 |
0.96 |
chr12 | 72514640 | 72520656 | chr12:72514640-72520656:-:L1PA3:REF | L1PA3 | REF | full-length | TRHDE | 0.03 |
0.48 |
0.81 |
0.61 |
0.15 |
0.97 |
0.39 |
0.97 |
0.94 |
0.1 |
0.98 |
0.98 |
chr12 | 72634504 | 72640519 | chr12:72634504-72640519:-:L1PA3:REF | L1PA3 | REF | full-length | TRHDE | 0.06 |
0.44 |
0.76 |
0.56 |
0.44 |
0.79 |
0.66 |
0.74 |
0.77 |
0.11 |
0.82 |
0.83 |
chr12 | 73147617 | 73153645 | chr12:73147617-73153645:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02444 | 0.02 |
0.2 |
0.64 |
0.6 |
0.08 |
0.77 |
0.01 |
0.79 |
0.9 |
0.37 |
0.76 |
0.92 |
chr12 | 73193623 | 73199787 | chr12:73193623-73199787:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02444 | 0.03 |
0.67 |
0.69 |
0.53 |
0.89 |
0.82 |
0.8 |
0.84 |
0.95 |
0.88 |
0.83 |
0.99 |
chr12 | 73283667 | 73289668 | chr12:73283667-73289668:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.69 |
0.68 |
0.62 |
0.35 |
0.68 |
0.77 |
0.67 |
0.89 |
0.84 |
0.74 |
0.87 |
chr12 | 73394809 | 73400830 | chr12:73394809-73400830:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.68 |
0.8 |
0.62 |
0.72 |
0.6 |
0.63 |
0.63 |
0.85 |
0.93 |
0.71 |
0.92 |
chr12 | 73500000 | 73504208 | chr12:73500000-73504208:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.4 |
0.46 |
0.24 |
0.92 |
0.61 |
0.4 |
0.55 |
0.93 |
0.76 |
0.59 |
0.98 |
chr12 | 73977927 | 73983898 | chr12:73977927-73983898:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.21 |
0.75 |
0.81 |
0.38 |
— | 0.72 |
0.57 |
0.75 |
0.95 |
0.89 |
— | 0.98 |
chr12 | 74503521 | 74509541 | chr12:74503521-74509541:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.01 |
0.9 |
0.65 |
0.05 |
0.8 |
0.01 |
0.82 |
— | 0.0 |
0.84 |
0.99 |
chr12 | 74874868 | 74880901 | chr12:74874868-74880901:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.98 |
0.92 |
0.92 |
0.05 |
0.83 |
0.42 |
0.64 |
0.96 |
0.88 |
0.9 |
0.98 |
chr12 | 75517430 | 75523582 | chr12:75517430-75523582:-:L1PA4:REF | L1PA4 | REF | full-length | KRR1 | 0.21 |
0.92 |
0.93 |
0.85 |
0.91 |
0.9 |
0.71 |
0.93 |
0.97 |
0.95 |
0.96 |
0.98 |
chr12 | 76319624 | 76325685 | chr12:76319624-76325685:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.01 |
0.85 |
0.09 |
0.21 |
0.97 |
0.01 |
0.93 |
0.76 |
0.03 |
0.9 |
0.98 |
chr12 | 77173381 | 77179424 | chr12:77173381-77179424:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.67 |
— | 0.72 |
0.06 |
— | 0.8 |
— | — | 0.69 |
0.89 |
— |
chr12 | 77459286 | 77464442 | chr12:77459286-77464442:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.12 |
0.28 |
0.11 |
0.86 |
0.67 |
0.26 |
0.58 |
0.89 |
0.32 |
0.61 |
0.88 |
chr12 | 77653964 | 77660122 | chr12:77653964-77660122:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.66 |
0.84 |
0.4 |
0.88 |
0.91 |
0.32 |
0.86 |
0.93 |
0.89 |
0.9 |
0.98 |
chr12 | 78506430 | 78512587 | chr12:78506430-78512587:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.68 |
0.36 |
0.77 |
0.7 |
0.47 |
0.8 |
0.96 |
0.87 |
0.9 |
0.98 |
chr12 | 78608485 | 78609976 | chr12:78608485-78609976:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.74 |
0.75 |
0.46 |
0.88 |
0.7 |
0.34 |
0.75 |
0.98 |
0.78 |
0.9 |
0.97 |
chr12 | 79039621 | 79045645 | chr12:79039621-79045645:-:L1PA2:REF | L1PA2 | REF | full-length | SYT1 | 0.11 |
0.01 |
0.95 |
0.87 |
0.07 |
0.92 |
0.94 |
0.98 |
0.65 |
0.01 |
0.98 |
0.98 |
chr12 | 79861341 | 79867483 | chr12:79861341-79867483:+:L1PA7:REF | L1PA7 | REF | full-length | PPP1R12A | — | — | — | 0.96 |
0.94 |
0.97 |
0.96 |
— | — | 0.99 |
0.99 |
1.0 |
chr12 | 80074669 | 80080828 | chr12:80074669-80080828:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.78 |
0.88 |
0.8 |
0.81 |
0.78 |
0.75 |
— | 0.92 |
0.83 |
0.9 |
0.82 |
chr12 | 80080827 | 80084722 | chr12:80080827-80084722:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.09 |
0.92 |
0.75 |
0.16 |
0.86 |
0.64 |
0.0 |
0.92 |
— | 0.65 |
0.87 |
0.91 |
chr12 | 80144055 | 80150076 | chr12:80144055-80150076:-:L1PA3:REF | L1PA3 | REF | full-length | OTOGL | 0.05 |
0.57 |
0.79 |
0.79 |
0.13 |
0.94 |
0.46 |
0.98 |
0.96 |
0.59 |
0.97 |
0.98 |
chr12 | 80244169 | 80250184 | chr12:80244169-80250184:-:L1PA2:REF | L1PA2 | REF | full-length | OTOGL | 0.02 |
0.93 |
0.95 |
0.77 |
0.05 |
0.87 |
0.75 |
0.97 |
0.81 |
0.97 |
0.97 |
0.98 |