Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 223366542 | 223372687 | chr1:223366542-223372687:-:L1PA3:REF | L1PA3 | REF | full-length | SUSD4 | — | — | 0.93 |
0.56 |
0.91 |
— | 0.61 |
— | — | 0.71 |
0.77 |
0.97 |
chr1 | 223395534 | 223401557 | chr1:223395534-223401557:-:L1PA2:REF | L1PA2 | REF | full-length | CCDC185 | 0.87 |
0.99 |
0.98 |
0.96 |
0.21 |
0.96 |
0.89 |
0.98 |
0.93 |
0.95 |
0.98 |
0.98 |
chr1 | 223446992 | 223453023 | chr1:223446992-223453023:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.93 |
0.89 |
— | 0.89 |
0.83 |
0.72 |
— | — | 0.78 |
0.85 |
0.79 |
chr1 | 225055535 | 225061656 | chr1:225055535-225061656:-:L1PA4:REF | L1PA4 | REF | full-length | DNAH14 | 0.57 |
0.78 |
0.79 |
0.77 |
0.74 |
0.62 |
0.79 |
0.71 |
0.77 |
0.8 |
0.79 |
0.8 |
chr1 | 228520690 | 228526835 | chr1:228520690-228526835:-:L1PA4:REF | L1PA4 | REF | full-length | BTNL10 | 0.02 |
0.97 |
0.6 |
0.39 |
— | 0.73 |
0.34 |
0.78 |
— | 0.38 |
— | 0.95 |
chr1 | 233821969 | 233828387 | chr1:233821969-233828387:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.81 |
0.3 |
0.05 |
0.83 |
0.22 |
0.02 |
0.15 |
0.78 |
0.04 |
0.14 |
0.81 |
chr1 | 237019467 | 237025494 | chr1:237019467-237025494:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.62 |
0.93 |
0.62 |
0.83 |
0.79 |
0.8 |
0.82 |
0.89 |
0.78 |
0.78 |
0.86 |
chr1 | 237075264 | 237081293 | chr1:237075264-237081293:+:L1HS:REF | L1HS | REF | full-length | RYR2 | 0.02 |
0.49 |
0.97 |
0.78 |
0.1 |
0.85 |
0.84 |
0.9 |
0.86 |
0.88 |
0.85 |
0.92 |
chr1 | 238037114 | 238043265 | chr1:238037114-238043265:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
— | 0.66 |
— | — | — | 0.62 |
— | — | 0.38 |
0.82 |
0.97 |
chr1 | 239623498 | 239629523 | chr1:239623498-239629523:-:L1HS:REF | L1HS | REF | full-length | CHRM3 | 0.02 |
0.79 |
0.89 |
0.54 |
0.05 |
0.71 |
0.63 |
0.82 |
0.85 |
0.68 |
0.72 |
0.87 |
chr1 | 239637768 | 239643908 | chr1:239637768-239643908:-:L1PA3:REF | L1PA3 | REF | full-length | CHRM3 | 0.0 |
0.51 |
0.94 |
0.32 |
0.95 |
0.6 |
0.39 |
0.51 |
0.88 |
0.39 |
0.63 |
0.83 |
chr1 | 242045561 | 242051585 | chr1:242045561-242051585:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.51 |
0.9 |
0.61 |
0.2 |
0.75 |
0.56 |
0.7 |
0.85 |
0.81 |
0.73 |
0.9 |
chr1 | 242481073 | 242487222 | chr1:242481073-242487222:+:L1PA4:REF | L1PA4 | REF | full-length | PLD5 | 0.02 |
0.54 |
0.74 |
0.16 |
0.9 |
0.58 |
0.17 |
0.57 |
0.91 |
0.11 |
0.52 |
0.66 |
chr1 | 244566687 | 244569386 | chr1:244566687-244569386:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CATSPERE | 0.0 |
0.85 |
0.87 |
0.54 |
0.91 |
0.76 |
0.37 |
0.73 |
0.95 |
0.44 |
0.83 |
0.95 |
chr1 | 245816539 | 245822560 | chr1:245816539-245822560:+:L1PA3:REF | L1PA3 | REF | full-length | SMYD3 | 0.96 |
0.98 |
0.98 |
0.89 |
0.82 |
0.98 |
0.99 |
0.98 |
0.97 |
0.96 |
0.92 |
0.99 |
chr1 | 247954964 | 247961087 | chr1:247954964-247961087:-:L1PA4:REF | L1PA4 | REF | full-length | OR2L13 | 0.01 |
0.34 |
0.65 |
0.1 |
0.73 |
0.45 |
0.23 |
0.5 |
0.69 |
0.08 |
0.48 |
0.3 |
chr1 | 248067512 | 248073636 | chr1:248067512-248073636:+:L1PA3:REF | L1PA3 | REF | full-length | OR2L13 | 0.01 |
0.05 |
— | 0.44 |
0.43 |
0.68 |
0.36 |
0.68 |
0.82 |
0.42 |
0.69 |
0.48 |
chr1 | 248166557 | 248172589 | chr1:248166557-248172589:-:L1PA2:REF | L1PA2 | REF | full-length | OR2M2 | 0.01 |
0.19 |
0.51 |
0.49 |
0.06 |
0.61 |
0.3 |
0.62 |
0.73 |
0.38 |
0.59 |
0.75 |
chr1 | 248252861 | 248258877 | chr1:248252861-248258877:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.21 |
0.72 |
0.4 |
0.88 |
0.68 |
0.58 |
0.68 |
0.9 |
0.3 |
0.75 |
0.7 |
chr1 | 248527957 | 248533941 | chr1:248527957-248533941:+:L1PA3:REF | L1PA3 | REF | full-length | OR2G6 | 0.04 |
0.26 |
0.53 |
0.41 |
0.83 |
0.65 |
0.55 |
0.7 |
0.82 |
0.36 |
0.68 |
0.66 |
chr2 | 799542 | 805567 | chr2:799542-805567:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01115 | 0.13 |
0.07 |
0.89 |
0.66 |
0.55 |
0.75 |
0.62 |
0.75 |
0.88 |
0.84 |
0.76 |
0.84 |
chr2 | 3030542 | 3033219 | chr2:3030542-3033219:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC01250 | 0.0 |
0.21 |
0.69 |
0.26 |
0.91 |
0.61 |
0.6 |
0.58 |
0.95 |
0.29 |
0.56 |
0.6 |
chr2 | 3369246 | 3375395 | chr2:3369246-3375395:+:L1PA3:REF | L1PA3 | REF | full-length | EIPR1 | 0.89 |
0.01 |
0.9 |
0.01 |
0.82 |
0.9 |
0.15 |
0.9 |
0.89 |
0.9 |
0.9 |
0.9 |
chr2 | 3794364 | 3800395 | chr2:3794364-3800395:-:L1PA3:REF | L1PA3 | REF | full-length | DCDC2C | 0.08 |
0.94 |
0.88 |
0.6 |
0.89 |
0.74 |
0.72 |
0.84 |
0.91 |
0.49 |
0.82 |
0.76 |
chr2 | 4157808 | 4163833 | chr2:4157808-4163833:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.53 |
0.48 |
0.28 |
0.74 |
0.64 |
0.29 |
0.69 |
0.92 |
0.13 |
0.68 |
0.59 |
chr2 | 4642968 | 4648965 | chr2:4642968-4648965:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01249 | 0.01 |
0.67 |
0.96 |
0.24 |
0.22 |
0.79 |
0.67 |
0.78 |
0.92 |
0.4 |
0.78 |
0.74 |
chr2 | 9038331 | 9044482 | chr2:9038331-9044482:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.7 |
0.94 |
0.8 |
0.53 |
0.87 |
— | 0.32 |
0.9 |
0.95 |
0.78 |
0.89 |
0.96 |
chr2 | 9860962 | 9867093 | chr2:9860962-9867093:+:L1PA4:REF | L1PA4 | REF | full-length | TAF1B | 0.98 |
0.99 |
0.97 |
0.98 |
0.92 |
0.99 |
0.97 |
0.98 |
0.98 |
0.98 |
0.97 |
0.97 |
chr2 | 11000000 | 11002136 | chr2:11000000-11002136:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.07 |
0.96 |
0.96 |
0.7 |
0.65 |
0.9 |
0.82 |
0.96 |
0.88 |
0.89 |
0.96 |
0.95 |
chr2 | 11881460 | 11887603 | chr2:11881460-11887603:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.8 |
0.85 |
0.95 |
0.2 |
0.93 |
0.78 |
0.45 |
0.7 |
0.95 |
0.42 |
0.85 |
0.96 |
chr2 | 12521757 | 12527771 | chr2:12521757-12527771:-:L1PA2:REF | L1PA2 | REF | full-length | MIR3681HG | 0.88 |
0.84 |
0.91 |
0.62 |
0.88 |
0.92 |
0.76 |
0.89 |
— | 0.71 |
0.88 |
0.76 |
chr2 | 14099133 | 14105291 | chr2:14099133-14105291:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.6 |
0.73 |
0.52 |
0.62 |
0.71 |
0.5 |
0.63 |
0.94 |
0.23 |
0.63 |
0.69 |
chr2 | 14783324 | 14789477 | chr2:14783324-14789477:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.88 |
0.66 |
0.33 |
0.83 |
0.69 |
0.79 |
0.72 |
0.83 |
0.14 |
0.67 |
0.52 |
chr2 | 14848064 | 14854078 | chr2:14848064-14854078:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.91 |
0.85 |
0.57 |
0.31 |
0.8 |
0.77 |
0.79 |
0.92 |
0.48 |
0.76 |
0.82 |
chr2 | 15316249 | 15322384 | chr2:15316249-15322384:+:L1PA6:REF | L1PA6 | REF | full-length | NBAS | 0.92 |
0.97 |
0.97 |
0.96 |
0.8 |
0.94 |
0.98 |
0.97 |
0.91 |
0.96 |
0.98 |
0.98 |
chr2 | 15439500 | 15445667 | chr2:15439500-15445667:+:L1PA3:REF | L1PA3 | REF | full-length | NBAS | 0.92 |
0.97 |
0.97 |
0.92 |
0.92 |
0.98 |
0.98 |
0.98 |
0.95 |
0.96 |
0.97 |
0.5 |
chr2 | 16233958 | 16235593 | chr2:16233958-16235593:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.24 |
0.97 |
0.94 |
0.74 |
0.67 |
0.76 |
0.93 |
0.81 |
0.92 |
0.87 |
0.82 |
0.91 |
chr2 | 16593725 | 16599758 | chr2:16593725-16599758:-:L1HS:REF | L1HS | REF | full-length | FAM49A | 0.04 |
0.96 |
0.94 |
0.71 |
0.29 |
0.87 |
0.89 |
0.93 |
0.94 |
0.85 |
0.88 |
0.82 |
chr2 | 18012016 | 18018024 | chr2:18012016-18018024:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.82 |
0.91 |
0.61 |
0.24 |
0.88 |
0.65 |
0.87 |
0.92 |
0.44 |
0.88 |
0.88 |
chr2 | 18140126 | 18145285 | chr2:18140126-18145285:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
— | — | 0.02 |
0.65 |
0.75 |
0.31 |
— | — | 0.15 |
0.62 |
0.16 |
chr2 | 18692198 | 18698337 | chr2:18692198-18698337:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.99 |
0.82 |
0.23 |
0.99 |
0.87 |
0.88 |
0.92 |
0.92 |
0.77 |
0.93 |
0.68 |
chr2 | 19089266 | 19095388 | chr2:19089266-19095388:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.93 |
0.95 |
0.05 |
0.83 |
0.99 |
0.89 |
0.99 |
0.94 |
0.72 |
0.75 |
0.53 |
chr2 | 19305839 | 19311862 | chr2:19305839-19311862:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.15 |
0.96 |
0.72 |
0.02 |
0.94 |
0.83 |
0.94 |
0.93 |
0.68 |
0.98 |
0.96 |
chr2 | 20872293 | 20875989 | chr2:20872293-20875989:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.68 |
0.54 |
0.09 |
0.84 |
0.42 |
0.53 |
0.45 |
0.8 |
0.02 |
0.44 |
0.53 |
chr2 | 20905451 | 20911612 | chr2:20905451-20911612:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.79 |
0.85 |
0.54 |
0.93 |
0.8 |
0.74 |
0.76 |
0.94 |
0.38 |
0.81 |
0.81 |
chr2 | 21208575 | 21214737 | chr2:21208575-21214737:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.22 |
0.51 |
0.75 |
0.36 |
0.9 |
0.74 |
0.19 |
0.77 |
0.98 |
0.37 |
0.87 |
0.57 |
chr2 | 21335938 | 21342064 | chr2:21335938-21342064:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.3 |
0.67 |
0.21 |
0.84 |
0.57 |
0.45 |
0.68 |
0.89 |
0.18 |
0.75 |
0.35 |
chr2 | 21903319 | 21909344 | chr2:21903319-21909344:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.37 |
0.79 |
0.68 |
0.54 |
0.86 |
0.74 |
0.9 |
0.94 |
0.53 |
0.96 |
0.77 |
chr2 | 22156442 | 22162464 | chr2:22156442-22162464:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.11 |
0.53 |
0.44 |
0.85 |
0.67 |
0.17 |
0.72 |
0.92 |
0.28 |
0.82 |
0.63 |
chr2 | 22968126 | 22968128 | chr2:22968126-22968128:-:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | 0.93 |
— | 0.71 |
0.8 |
0.82 |
— | — | 0.69 |
0.84 |
— |