Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 62555076 | 62555453 | chr6:62555076-62555453:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.51 |
0.67 |
0.28 |
0.87 |
0.66 |
0.27 |
0.68 |
0.96 |
0.27 |
0.72 |
0.97 |
chr6 | 62817772 | 62818916 | chr6:62817772-62818916:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.28 |
0.14 |
0.03 |
0.84 |
0.47 |
0.23 |
0.5 |
0.95 |
0.09 |
0.48 |
0.99 |
chr6 | 63052978 | 63054313 | chr6:63052978-63054313:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.0 |
0.14 |
— | 0.26 |
0.48 |
0.47 |
0.01 |
0.49 |
0.81 |
0.22 |
0.46 |
0.89 |
chr6 | 64389760 | 64395796 | chr6:64389760-64395796:+:L1PA2:REF | L1PA2 | REF | full-length | EYS | 0.02 |
0.2 |
0.88 |
0.69 |
0.17 |
0.67 |
0.65 |
0.76 |
0.89 |
0.94 |
0.88 |
0.99 |
chr6 | 64896140 | 64899388 | chr6:64896140-64899388:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | EYS | 0.0 |
0.77 |
0.54 |
0.49 |
0.57 |
0.22 |
0.01 |
0.66 |
0.77 |
0.86 |
0.38 |
0.98 |
chr6 | 66166505 | 66170098 | chr6:66166505-66170098:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
— | — | — | — | — | 0.64 |
— | — | — | 0.73 |
— |
chr6 | 66540927 | 66547077 | chr6:66540927-66547077:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
— | 0.37 |
0.12 |
— | 0.32 |
0.14 |
0.25 |
— | 0.37 |
0.21 |
— |
chr6 | 66630834 | 66636983 | chr6:66630834-66636983:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.44 |
0.18 |
0.53 |
0.55 |
0.57 |
0.69 |
0.57 |
0.56 |
0.73 |
0.58 |
chr6 | 67095414 | 67101549 | chr6:67095414-67101549:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.16 |
0.56 |
0.09 |
0.09 |
0.26 |
0.14 |
0.03 |
0.22 |
0.61 |
0.12 |
0.44 |
0.63 |
chr6 | 67295505 | 67301096 | chr6:67295505-67301096:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.22 |
— | — | — | 0.22 |
— |
chr6 | 68283873 | 68290045 | chr6:68283873-68290045:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02549 | 0.29 |
0.77 |
0.45 |
0.22 |
0.85 |
0.54 |
0.18 |
0.57 |
0.79 |
0.47 |
0.45 |
0.97 |
chr6 | 69439539 | 69445568 | chr6:69439539-69445568:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.53 |
0.68 |
0.6 |
0.83 |
0.71 |
0.31 |
0.73 |
0.85 |
0.65 |
0.66 |
0.96 |
chr6 | 69495362 | 69500000 | chr6:69495362-69500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.45 |
0.66 |
0.3 |
0.58 |
0.6 |
0.36 |
0.62 |
0.93 |
0.69 |
0.69 |
0.97 |
chr6 | 69515143 | 69521169 | chr6:69515143-69521169:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.76 |
0.65 |
0.57 |
0.24 |
0.68 |
0.45 |
0.72 |
0.84 |
0.34 |
0.75 |
0.93 |
chr6 | 70010347 | 70016552 | chr6:70010347-70016552:+:L1HS:REF | L1HS | REF | full-length | COL19A1 | 0.02 |
0.63 |
0.94 |
0.63 |
0.09 |
0.87 |
0.8 |
0.83 |
0.95 |
0.92 |
0.8 |
0.98 |
chr6 | 70317563 | 70323719 | chr6:70317563-70323719:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.62 |
0.36 |
0.96 |
0.49 |
0.9 |
0.78 |
0.71 |
0.75 |
0.96 |
0.92 |
0.81 |
0.83 |
chr6 | 70914791 | 70920557 | chr6:70914791-70920557:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | B3GAT2 | 0.01 |
0.06 |
0.84 |
0.05 |
0.81 |
0.42 |
0.02 |
0.49 |
0.82 |
0.72 |
0.22 |
0.94 |
chr6 | 70944092 | 70950217 | chr6:70944092-70950217:+:L1PA3:REF | L1PA3 | REF | full-length | B3GAT2 | 0.02 |
0.74 |
0.92 |
0.7 |
0.93 |
0.76 |
0.72 |
0.83 |
0.93 |
0.94 |
0.83 |
0.98 |
chr6 | 71355361 | 71361788 | chr6:71355361-71361788:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.02 |
— | — | — | 0.41 |
— | 0.3 |
— | — | — | 0.67 |
0.79 |
chr6 | 72006343 | 72012487 | chr6:72006343-72012487:+:L1PA4:REF | L1PA4 | REF | full-length | RIMS1 | — | — | — | — | 0.99 |
— | 0.01 |
— | — | — | 0.79 |
— |
chr6 | 72122505 | 72126122 | chr6:72122505-72126122:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | RIMS1 | 0.0 |
0.12 |
0.52 |
0.07 |
0.73 |
0.39 |
0.03 |
0.71 |
0.86 |
0.24 |
0.6 |
0.73 |
chr6 | 72469432 | 72475586 | chr6:72469432-72475586:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.9 |
0.32 |
0.85 |
0.51 |
0.89 |
0.95 |
0.39 |
0.95 |
0.96 |
0.81 |
0.92 |
0.84 |
chr6 | 72570139 | 72576167 | chr6:72570139-72576167:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.95 |
0.59 |
0.96 |
0.76 |
0.09 |
0.97 |
0.75 |
0.96 |
0.93 |
0.9 |
0.97 |
0.94 |
chr6 | 72988654 | 72994686 | chr6:72988654-72994686:-:L1HS:REF | L1HS | REF | full-length | KCNQ5 | 0.44 |
0.91 |
0.97 |
0.84 |
0.1 |
0.98 |
0.88 |
0.96 |
0.96 |
0.97 |
0.97 |
0.92 |
chr6 | 73835382 | 73841425 | chr6:73835382-73841425:-:L1PA2:REF | L1PA2 | REF | full-length | CD109 | 0.01 |
0.45 |
0.93 |
0.89 |
0.32 |
0.93 |
0.76 |
0.92 |
0.79 |
0.22 |
0.89 |
0.88 |
chr6 | 73917512 | 73923690 | chr6:73917512-73923690:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.51 |
0.47 |
0.17 |
0.8 |
0.47 |
0.32 |
— | 0.93 |
0.15 |
0.8 |
0.97 |
chr6 | 74013311 | 74013637 | chr6:74013311-74013637:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.07 |
0.95 |
0.79 |
0.69 |
0.91 |
0.93 |
0.47 |
0.89 |
0.96 |
0.5 |
0.97 |
0.98 |
chr6 | 74026849 | 74030817 | chr6:74026849-74030817:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.48 |
0.46 |
0.42 |
0.81 |
0.7 |
0.08 |
0.84 |
0.88 |
0.22 |
0.84 |
0.97 |
chr6 | 74337744 | 74343920 | chr6:74337744-74343920:-:L1PA5:REF | L1PA5 | REF | full-length | LOC101928516 | 0.0 |
0.56 |
0.41 |
0.55 |
0.91 |
0.88 |
0.09 |
0.92 |
0.94 |
0.06 |
0.94 |
0.74 |
chr6 | 74660015 | 74666151 | chr6:74660015-74666151:+:L1PA4:REF | L1PA4 | REF | full-length | LOC101928516 | 0.01 |
0.36 |
0.53 |
0.81 |
0.87 |
0.88 |
0.18 |
0.92 |
0.89 |
0.05 |
0.91 |
0.95 |
chr6 | 74903761 | 74909912 | chr6:74903761-74909912:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.89 |
0.8 |
0.97 |
0.89 |
0.96 |
0.8 |
0.97 |
0.98 |
0.56 |
0.96 |
0.99 |
chr6 | 75899741 | 75905745 | chr6:75899741-75905745:-:L1PA3:REF | L1PA3 | REF | full-length | MYO6 | 0.26 |
0.25 |
0.99 |
— | 0.92 |
0.97 |
0.99 |
0.98 |
0.93 |
0.98 |
0.98 |
0.99 |
chr6 | 76105618 | 76111641 | chr6:76105618-76111641:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.76 |
0.83 |
0.6 |
0.52 |
0.78 |
0.51 |
0.86 |
0.9 |
0.62 |
0.8 |
0.99 |
chr6 | 76137899 | 76143882 | chr6:76137899-76143882:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.74 |
0.29 |
0.07 |
0.86 |
0.45 |
0.03 |
0.52 |
0.92 |
0.01 |
0.47 |
0.93 |
chr6 | 76369432 | 76375591 | chr6:76369432-76375591:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.88 |
0.71 |
0.35 |
0.9 |
0.6 |
0.3 |
0.63 |
0.95 |
0.5 |
0.74 |
0.98 |
chr6 | 76875759 | 76877075 | chr6:76875759-76877075:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.12 |
0.01 |
0.89 |
0.89 |
0.09 |
0.59 |
0.62 |
0.68 |
0.08 |
0.0 |
0.68 |
0.99 |
chr6 | 76900222 | 76906229 | chr6:76900222-76906229:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.19 |
0.75 |
0.67 |
0.82 |
0.83 |
0.54 |
0.85 |
0.96 |
0.6 |
0.71 |
0.98 |
chr6 | 76958965 | 76964983 | chr6:76958965-76964983:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.84 |
0.87 |
0.74 |
0.4 |
0.82 |
0.77 |
0.94 |
0.96 |
0.75 |
0.8 |
0.98 |
chr6 | 77082477 | 77088496 | chr6:77082477-77088496:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.5 |
0.89 |
0.75 |
0.13 |
— | 0.5 |
0.85 |
0.94 |
0.74 |
0.71 |
0.98 |
chr6 | 77251532 | 77257669 | chr6:77251532-77257669:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.68 |
0.96 |
0.9 |
0.73 |
0.65 |
0.74 |
0.8 |
0.98 |
0.9 |
0.73 |
0.98 |
chr6 | 77699491 | 77700741 | chr6:77699491-77700741:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | MEI4 | 0.02 |
0.01 |
0.76 |
0.51 |
0.92 |
0.75 |
0.64 |
0.75 |
0.95 |
0.4 |
0.71 |
0.98 |
chr6 | 77730626 | 77736661 | chr6:77730626-77736661:-:L1PA3:REF | L1PA3 | REF | full-length | MEI4 | 0.01 |
— | — | — | 0.92 |
0.78 |
0.68 |
— | — | 0.6 |
0.78 |
0.82 |
chr6 | 77798491 | 77804602 | chr6:77798491-77804602:-:L1PA3:REF | L1PA3 | REF | full-length | MEI4 | 0.03 |
0.6 |
0.62 |
0.36 |
0.92 |
0.72 |
0.87 |
0.7 |
0.96 |
— | 0.65 |
0.97 |
chr6 | 77862081 | 77868224 | chr6:77862081-77868224:+:L1PA4:REF | L1PA4 | REF | full-length | MEI4 | 0.01 |
0.26 |
0.2 |
0.08 |
0.9 |
0.4 |
0.48 |
0.37 |
0.91 |
0.07 |
0.36 |
0.97 |
chr6 | 77991081 | 77997193 | chr6:77991081-77997193:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.72 |
0.73 |
0.36 |
0.94 |
0.8 |
0.52 |
0.83 |
0.97 |
0.43 |
0.77 |
0.98 |
chr6 | 78467208 | 78473345 | chr6:78467208-78473345:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.64 |
0.56 |
0.15 |
0.66 |
0.75 |
0.3 |
— | — | — | 0.81 |
0.98 |
chr6 | 78646742 | 78652881 | chr6:78646742-78652881:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.01 |
0.63 |
0.24 |
0.53 |
0.65 |
0.07 |
0.6 |
0.84 |
0.19 |
0.59 |
0.81 |
chr6 | 78694312 | 78700460 | chr6:78694312-78700460:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.88 |
0.33 |
0.09 |
0.84 |
0.51 |
0.3 |
0.64 |
0.84 |
0.03 |
0.56 |
0.85 |
chr6 | 78802650 | 78808101 | chr6:78802650-78808101:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
— | 0.41 |
0.26 |
0.84 |
0.43 |
0.02 |
0.61 |
0.93 |
0.09 |
0.7 |
0.98 |
chr6 | 78920945 | 78924807 | chr6:78920945-78924807:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | PHIP | 0.02 |
0.96 |
0.89 |
0.1 |
0.9 |
0.76 |
0.06 |
0.81 |
0.96 |
0.85 |
0.82 |
0.97 |