Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7 | 146905784 | 146911817 | chr7:146905784-146911817:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP2 | 0.02 |
0.75 |
0.95 |
0.71 |
0.14 |
0.82 |
0.78 |
0.86 |
0.96 |
0.85 |
0.82 |
0.92 |
chr7 | 146928453 | 146934611 | chr7:146928453-146934611:+:L1PA3:REF | L1PA3 | REF | full-length | CNTNAP2 | — | — | 0.95 |
— | — | — | 0.57 |
0.74 |
— | 0.48 |
0.77 |
0.64 |
chr7 | 147732040 | 147738166 | chr7:147732040-147738166:-:L1PA5:REF | L1PA5 | REF | full-length | CNTNAP2 | 0.01 |
0.6 |
0.81 |
0.53 |
0.91 |
0.77 |
0.45 |
0.79 |
0.94 |
0.64 |
0.75 |
0.82 |
chr7 | 147842591 | 147848623 | chr7:147842591-147848623:-:L1HS:REF | L1HS | REF | full-length | CNTNAP2 | 0.01 |
0.65 |
0.76 |
0.51 |
0.23 |
0.74 |
0.58 |
0.79 |
0.92 |
0.63 |
0.7 |
0.83 |
chr7 | 147862933 | 147869109 | chr7:147862933-147869109:-:L1PA6:REF | L1PA6 | REF | full-length | CNTNAP2 | 0.01 |
0.32 |
0.33 |
0.14 |
0.7 |
0.37 |
0.02 |
0.39 |
0.86 |
0.24 |
0.32 |
0.4 |
chr7 | 150574480 | 150580621 | chr7:150574480-150580621:-:L1PA4:REF | L1PA4 | REF | full-length | GIMAP4 | 0.0 |
0.43 |
0.19 |
— | 0.82 |
0.41 |
0.1 |
0.52 |
0.76 |
0.02 |
0.49 |
0.48 |
chr7 | 150597094 | 150602628 | chr7:150597094-150602628:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.44 |
0.37 |
0.12 |
0.83 |
0.52 |
0.05 |
0.4 |
0.79 |
0.05 |
0.44 |
0.43 |
chr7 | 150605597 | 150609905 | chr7:150605597-150609905:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.44 |
0.4 |
0.0 |
0.75 |
0.19 |
0.23 |
0.26 |
0.79 |
0.04 |
0.26 |
0.2 |
chr7 | 150678372 | 150680224 | chr7:150678372-150680224:+:L1P1:REF | L1P1 | REF | 3prime-truncated | GIMAP2 | 0.0 |
0.51 |
0.44 |
0.42 |
0.86 |
0.55 |
0.5 |
0.58 |
0.9 |
0.04 |
0.55 |
0.78 |
chr7 | 150706238 | 150712266 | chr7:150706238-150712266:+:L1PA3:REF | L1PA3 | REF | full-length | GIMAP1-GIMAP5 | 0.01 |
0.87 |
0.56 |
0.11 |
0.78 |
0.31 |
0.04 |
0.45 |
0.7 |
— | 0.53 |
0.48 |
chr7 | 150807555 | 150813715 | chr7:150807555-150813715:+:L1PA6:REF | L1PA6 | REF | full-length | TMEM176A | 0.03 |
0.86 |
0.45 |
0.05 |
0.94 |
0.32 |
0.56 |
0.52 |
0.88 |
0.17 |
0.65 |
0.38 |
chr7 | 152060477 | 152066587 | chr7:152060477-152066587:-:L1PA5:REF | L1PA5 | REF | full-length | GALNT11 | 0.78 |
0.94 |
0.98 |
0.94 |
0.81 |
0.98 |
0.97 |
0.96 |
0.94 |
0.95 |
0.95 |
0.97 |
chr7 | 153316231 | 153318750 | chr7:153316231-153318750:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.56 |
0.15 |
0.86 |
0.59 |
0.44 |
0.63 |
0.91 |
0.22 |
0.58 |
0.6 |
chr7 | 153865655 | 153871799 | chr7:153865655-153871799:-:L1PA4:REF | L1PA4 | REF | full-length | DPP6 | 0.02 |
0.5 |
0.61 |
0.45 |
0.91 |
0.72 |
0.48 |
0.7 |
0.95 |
0.35 |
0.76 |
0.76 |
chr7 | 156909394 | 156915542 | chr7:156909394-156915542:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.46 |
0.89 |
0.95 |
0.86 |
0.85 |
0.81 |
0.88 |
0.89 |
0.88 |
0.94 |
0.9 |
0.88 |
chr8 | 773346 | 779366 | chr8:773346-779366:-:L1PA2:REF | L1PA2 | REF | full-length | DLGAP2 | 0.32 |
0.93 |
0.94 |
0.73 |
0.68 |
0.79 |
0.81 |
0.77 |
0.9 |
0.7 |
0.79 |
0.79 |
chr8 | 1607577 | 1613555 | chr8:1607577-1613555:+:L1PA2:REF | L1PA2 | REF | full-length | DLGAP2 | 0.02 |
0.95 |
0.86 |
0.7 |
0.21 |
0.23 |
0.17 |
0.11 |
0.29 |
— | 0.18 |
0.86 |
chr8 | 3288826 | 3294970 | chr8:3288826-3294970:-:L1PA4:REF | L1PA4 | REF | full-length | CSMD1 | 0.01 |
0.24 |
0.56 |
0.5 |
0.92 |
0.67 |
0.45 |
0.73 |
0.93 |
0.21 |
0.67 |
0.73 |
chr8 | 3450312 | 3456444 | chr8:3450312-3456444:-:L1PA4:REF | L1PA4 | REF | full-length | CSMD1 | — | 0.1 |
— | — | 0.84 |
0.2 |
— | 0.12 |
— | — | — | 0.11 |
chr8 | 4854406 | 4860419 | chr8:4854406-4860419:+:L1PA2:REF | L1PA2 | REF | full-length | CSMD1 | 0.0 |
0.15 |
0.62 |
0.4 |
0.69 |
0.64 |
0.62 |
0.72 |
0.95 |
0.3 |
0.7 |
0.69 |
chr8 | 5187029 | 5193146 | chr8:5187029-5193146:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
— | 0.7 |
0.48 |
— | 0.7 |
0.61 |
0.74 |
0.9 |
0.27 |
0.7 |
0.77 |
chr8 | 6085774 | 6091899 | chr8:6085774-6091899:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.39 |
0.69 |
— | 0.9 |
0.81 |
0.47 |
0.82 |
0.95 |
0.45 |
0.78 |
0.84 |
chr8 | 6191081 | 6197149 | chr8:6191081-6197149:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.36 |
0.81 |
0.35 |
0.95 |
0.72 |
0.3 |
0.72 |
0.76 |
0.56 |
0.63 |
0.48 |
chr8 | 8470859 | 8476906 | chr8:8470859-8476906:+:L1HS:REF | L1HS | REF | full-length | — | 0.31 |
0.91 |
— | 0.88 |
0.29 |
0.86 |
0.91 |
0.86 |
0.96 |
0.94 |
— | 0.91 |
chr8 | 9654760 | 9656611 | chr8:9654760-9656611:+:L1P1:REF | L1P1 | REF | 3prime-truncated | TNKS | 0.97 |
0.97 |
0.98 |
0.97 |
0.93 |
0.98 |
0.99 |
0.98 |
0.98 |
0.98 |
0.98 |
0.98 |
chr8 | 9815681 | 9818033 | chr8:9815681-9818033:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.04 |
0.47 |
0.64 |
0.03 |
— | 0.49 |
0.5 |
0.57 |
— | 0.7 |
0.59 |
0.85 |
chr8 | 11814868 | 11821002 | chr8:11814868-11821002:-:L1PA6:REF | L1PA6 | REF | full-length | FDFT1 | 0.92 |
0.82 |
0.95 |
0.96 |
0.96 |
0.98 |
0.94 |
0.95 |
0.96 |
0.96 |
0.95 |
0.97 |
chr8 | 14803216 | 14809243 | chr8:14803216-14809243:+:L1PA3:REF | L1PA3 | REF | full-length | SGCZ | 0.08 |
0.37 |
0.83 |
0.78 |
0.36 |
0.8 |
0.58 |
0.87 |
0.9 |
0.6 |
0.82 |
0.82 |
chr8 | 15555981 | 15562028 | chr8:15555981-15562028:-:L1PA2:REF | L1PA2 | REF | full-length | TUSC3 | 0.51 |
0.09 |
0.95 |
0.95 |
0.3 |
0.97 |
0.67 |
0.99 |
0.89 |
0.01 |
0.98 |
0.65 |
chr8 | 15576322 | 15582323 | chr8:15576322-15582323:-:L1PA2:REF | L1PA2 | REF | full-length | TUSC3 | 0.01 |
1.0 |
0.98 |
— | 0.34 |
0.99 |
0.74 |
0.99 |
0.91 |
0.15 |
0.99 |
0.82 |
chr8 | 16032507 | 16035341 | chr8:16032507-16035341:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.53 |
0.03 |
0.5 |
0.82 |
0.48 |
0.25 |
0.77 |
0.9 |
0.02 |
0.69 |
0.44 |
chr8 | 16204147 | 16207566 | chr8:16204147-16207566:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.19 |
0.42 |
0.69 |
0.95 |
0.72 |
0.1 |
0.92 |
— | 0.12 |
0.83 |
0.53 |
chr8 | 16670119 | 16674066 | chr8:16670119-16674066:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.02 |
0.9 |
0.91 |
0.98 |
0.19 |
0.91 |
0.91 |
0.91 |
0.95 |
0.58 |
0.98 |
0.95 |
chr8 | 16878304 | 16879397 | chr8:16878304-16879397:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.57 |
0.92 |
— | 0.73 |
0.95 |
— |
chr8 | 16943968 | 16949995 | chr8:16943968-16949995:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.75 |
0.94 |
0.71 |
0.3 |
0.8 |
0.9 |
0.91 |
0.57 |
0.75 |
0.95 |
0.97 |
chr8 | 17291308 | 17294896 | chr8:17291308-17294896:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | VPS37A | 0.94 |
0.97 |
0.46 |
0.97 |
0.9 |
0.71 |
0.97 |
0.92 |
0.94 |
0.66 |
0.85 |
0.98 |
chr8 | 19910039 | 19916128 | chr8:19910039-19916128:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.13 |
— | — | 0.08 |
— | 0.33 |
0.05 |
0.34 |
— | 0.44 |
0.33 |
0.31 |
chr8 | 19930161 | 19936300 | chr8:19930161-19936300:+:L1PA4:REF | L1PA4 | REF | full-length | LPL | 0.79 |
0.84 |
0.94 |
0.9 |
0.91 |
0.87 |
0.76 |
0.92 |
0.96 |
0.94 |
0.9 |
0.92 |
chr8 | 20742703 | 20748777 | chr8:20742703-20748777:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.06 |
0.91 |
0.21 |
0.89 |
0.62 |
0.33 |
0.67 |
0.78 |
0.13 |
0.65 |
0.5 |
chr8 | 21825719 | 21831739 | chr8:21825719-21831739:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.79 |
0.89 |
0.52 |
0.81 |
0.72 |
0.81 |
0.8 |
0.92 |
0.76 |
0.76 |
0.88 |
chr8 | 23645193 | 23651219 | chr8:23645193-23651219:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.92 |
0.97 |
0.89 |
0.29 |
0.89 |
0.86 |
0.91 |
0.89 |
0.77 |
0.9 |
0.9 |
chr8 | 24448685 | 24454809 | chr8:24448685-24454809:-:L1PA3:REF | L1PA3 | REF | full-length | LOC101929294 | 0.01 |
0.82 |
0.88 |
0.81 |
0.88 |
0.8 |
0.75 |
0.83 |
0.92 |
0.71 |
0.82 |
0.74 |
chr8 | 24839573 | 24845719 | chr8:24839573-24845719:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.34 |
0.86 |
0.63 |
— | 0.52 |
0.14 |
0.55 |
0.87 |
0.51 |
0.63 |
0.47 |
chr8 | 25730343 | 25736354 | chr8:25730343-25736354:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.11 |
0.02 |
0.97 |
0.79 |
0.17 |
0.89 |
0.93 |
0.78 |
0.89 |
0.83 |
0.86 |
0.9 |
chr8 | 26395612 | 26401579 | chr8:26395612-26401579:+:L1PA2:REF | L1PA2 | REF | full-length | BNIP3L | 0.97 |
0.94 |
0.92 |
0.96 |
0.16 |
0.98 |
0.95 |
0.98 |
0.85 |
0.94 |
0.98 |
0.99 |
chr8 | 27057852 | 27063983 | chr8:27057852-27063983:-:L1PA5:REF | L1PA5 | REF | full-length | MIR548H4 | 0.02 |
0.14 |
0.75 |
0.14 |
0.71 |
0.7 |
0.68 |
0.56 |
0.83 |
0.24 |
0.51 |
0.63 |
chr8 | 27113618 | 27119645 | chr8:27113618-27119645:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.58 |
0.78 |
0.72 |
0.8 |
0.76 |
0.82 |
0.78 |
0.85 |
0.49 |
0.73 |
0.77 |
chr8 | 27549392 | 27555435 | chr8:27549392-27555435:-:L1PA3:REF | L1PA3 | REF | full-length | EPHX2 | 0.71 |
0.71 |
0.85 |
0.8 |
0.82 |
0.77 |
0.92 |
0.78 |
0.85 |
0.84 |
0.75 |
0.87 |
chr8 | 31231264 | 31237418 | chr8:31231264-31237418:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.24 |
0.83 |
0.96 |
0.59 |
0.86 |
0.86 |
0.18 |
0.83 |
0.97 |
0.87 |
0.82 |
0.93 |
chr8 | 31566107 | 31571502 | chr8:31566107-31571502:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.1 |
0.48 |
0.05 |
0.78 |
0.36 |
0.12 |
0.35 |
0.9 |
0.0 |
0.4 |
0.16 |