Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10 | 112103925 | 112109951 | chr10:112103925-112109951:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.5 |
0.79 |
0.61 |
0.8 |
0.71 |
0.63 |
0.66 |
0.82 |
0.39 |
0.66 |
0.79 |
chr10 | 115362336 | 115368543 | chr10:115362336-115368543:-:L1PA2:REF | L1PA2 | REF | full-length | ATRNL1 | 0.01 |
0.98 |
0.94 |
— | 0.13 |
0.91 |
0.92 |
0.9 |
0.95 |
0.86 |
0.85 |
0.96 |
chr10 | 115581746 | 115587785 | chr10:115581746-115587785:-:L1PA3:REF | L1PA3 | REF | full-length | ATRNL1 | 0.01 |
0.83 |
0.82 |
0.48 |
0.46 |
0.64 |
0.29 |
0.74 |
0.8 |
0.78 |
0.51 |
0.67 |
chr10 | 117079038 | 117085063 | chr10:117079038-117085063:-:L1PA2:REF | L1PA2 | REF | full-length | SHTN1 | 0.23 |
0.94 |
0.97 |
0.86 |
0.28 |
0.81 |
0.87 |
0.85 |
0.74 |
0.23 |
0.82 |
0.97 |
chr10 | 117832895 | 117838887 | chr10:117832895-117838887:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.43 |
0.98 |
0.97 |
0.85 |
0.33 |
0.7 |
0.4 |
0.47 |
0.47 |
0.85 |
0.48 |
0.97 |
chr10 | 120234299 | 120240325 | chr10:120234299-120240325:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.81 |
0.88 |
0.7 |
0.64 |
0.78 |
0.61 |
0.78 |
0.86 |
0.83 |
0.77 |
0.78 |
chr10 | 120902678 | 120902680 | chr10:120902678-120902680:+:L1HS:NONREF | L1HS | KNR | — | WDR11 | — | — | — | — | — | — | — | 0.92 |
— | — | — | — |
chr10 | 120910959 | 120916983 | chr10:120910959-120916983:+:L1PA3:REF | L1PA3 | REF | full-length | WDR11 | 0.88 |
0.9 |
0.9 |
0.9 |
0.89 |
0.91 |
0.9 |
0.91 |
0.91 |
0.88 |
0.91 |
0.91 |
chr10 | 122695714 | 122695716 | chr10:122695714-122695716:+:L1HS:NONREF | L1HS | KNR | — | C10orf120 | — | — | — | — | 0.08 |
0.85 |
0.95 |
0.86 |
0.91 |
— | — | — |
chr10 | 125945237 | 125951250 | chr10:125945237-125951250:+:L1PA2:REF | L1PA2 | REF | full-length | FANK1 | 0.35 |
0.92 |
0.87 |
0.91 |
0.89 |
0.87 |
0.8 |
0.88 |
0.89 |
0.78 |
0.89 |
0.87 |
chr10 | 126676471 | 126682458 | chr10:126676471-126682458:+:L1PA3:REF | L1PA3 | REF | full-length | C10orf90 | 0.01 |
0.94 |
0.93 |
0.78 |
0.68 |
0.7 |
0.76 |
0.76 |
0.84 |
0.71 |
0.85 |
0.75 |
chr10 | 126761056 | 126767491 | chr10:126761056-126767491:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.96 |
0.65 |
0.07 |
0.91 |
0.06 |
0.07 |
0.25 |
0.84 |
0.05 |
0.28 |
0.1 |
chr10 | 126881867 | 126887893 | chr10:126881867-126887893:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.85 |
0.96 |
0.7 |
0.29 |
0.7 |
0.84 |
0.45 |
0.53 |
0.77 |
0.64 |
0.78 |
chr10 | 129732560 | 129738580 | chr10:129732560-129738580:-:L1PA3:REF | L1PA3 | REF | full-length | MGMT | 0.02 |
0.98 |
0.75 |
0.92 |
0.84 |
0.85 |
0.84 |
0.92 |
0.95 |
0.59 |
0.9 |
0.94 |
chr10 | 131504576 | 131510718 | chr10:131504576-131510718:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.21 |
0.71 |
0.78 |
0.9 |
0.78 |
0.75 |
0.82 |
0.94 |
0.49 |
0.8 |
0.84 |
chr10 | 132087710 | 132093874 | chr10:132087710-132093874:-:L1PA5:REF | L1PA5 | REF | full-length | JAKMIP3 | — | 0.86 |
0.88 |
— | 0.95 |
0.59 |
0.7 |
0.78 |
0.9 |
0.34 |
0.79 |
0.85 |
chr11 | 3900112 | 3900580 | chr11:3900112-3900580:-:L1P1:REF | L1P1 | REF | 3prime-truncated | STIM1 | 0.93 |
0.94 |
0.94 |
0.97 |
0.91 |
0.97 |
0.97 |
0.95 |
0.95 |
0.9 |
0.92 |
0.91 |
chr11 | 3999589 | 4000000 | chr11:3999589-4000000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | STIM1 | 0.94 |
0.97 |
0.98 |
0.85 |
0.86 |
0.94 |
0.95 |
0.97 |
0.94 |
0.91 |
0.95 |
0.99 |
chr11 | 4014005 | 4017206 | chr11:4014005-4017206:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | STIM1 | 0.93 |
0.96 |
0.97 |
0.95 |
0.95 |
0.98 |
0.98 |
0.96 |
0.95 |
0.95 |
0.85 |
0.97 |
chr11 | 4170252 | 4176276 | chr11:4170252-4176276:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.02 |
0.88 |
0.83 |
0.05 |
0.85 |
0.86 |
0.86 |
0.45 |
0.02 |
0.89 |
0.03 |
chr11 | 4531437 | 4534700 | chr11:4531437-4534700:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.03 |
0.6 |
0.8 |
0.02 |
0.72 |
0.68 |
0.76 |
0.55 |
0.44 |
0.46 |
0.33 |
0.18 |
chr11 | 4854097 | 4859276 | chr11:4854097-4859276:+:L1P2:REF | L1P2 | REF | 3prime-truncated | OR51H1 | 0.04 |
0.17 |
0.86 |
0.06 |
0.83 |
0.55 |
0.04 |
0.7 |
0.88 |
0.33 |
0.7 |
0.25 |
chr11 | 5477498 | 5483518 | chr11:5477498-5483518:+:L1PA2:REF | L1PA2 | REF | full-length | OR51B5 | — | — | 0.86 |
— | 0.6 |
0.64 |
0.69 |
0.83 |
— | — | 0.76 |
0.83 |
chr11 | 5914493 | 5918448 | chr11:5914493-5918448:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.32 |
0.57 |
0.16 |
0.74 |
— | 0.46 |
0.37 |
0.75 |
0.26 |
0.45 |
— |
chr11 | 6143657 | 6149454 | chr11:6143657-6149454:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.05 |
0.32 |
0.8 |
0.64 |
0.24 |
0.63 |
0.05 |
0.67 |
0.77 |
0.23 |
0.7 |
0.82 |
chr11 | 6185350 | 6191366 | chr11:6185350-6191366:+:L1PA2:REF | L1PA2 | REF | full-length | OR52W1 | 0.03 |
0.88 |
0.93 |
0.84 |
0.26 |
0.85 |
0.88 |
0.89 |
0.95 |
0.76 |
0.87 |
0.96 |
chr11 | 6948755 | 6954881 | chr11:6948755-6954881:-:L1PA3:REF | L1PA3 | REF | full-length | ZNF215 | 0.97 |
0.37 |
0.97 |
0.42 |
0.84 |
0.93 |
0.75 |
0.98 |
0.97 |
0.98 |
0.96 |
0.98 |
chr11 | 7658148 | 7664171 | chr11:7658148-7664171:-:L1PA2:REF | L1PA2 | REF | full-length | CYB5R2 | 0.17 |
0.68 |
0.89 |
— | 0.88 |
0.94 |
— | 0.76 |
— | 0.84 |
0.86 |
0.91 |
chr11 | 7734499 | 7740482 | chr11:7734499-7740482:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
— | — | 0.61 |
— | — | — | 0.85 |
— | — | — | — |
chr11 | 7861034 | 7867070 | chr11:7861034-7867070:+:L1PA2:REF | L1PA2 | REF | full-length | LOC283299 | 0.02 |
0.43 |
0.93 |
0.61 |
0.09 |
0.88 |
0.63 |
0.79 |
0.94 |
0.77 |
0.82 |
0.89 |
chr11 | 8396496 | 8402626 | chr11:8396496-8402626:+:L1PA4:REF | L1PA4 | REF | full-length | STK33 | 0.01 |
0.62 |
0.97 |
0.61 |
0.89 |
0.7 |
0.8 |
0.84 |
0.88 |
0.94 |
0.75 |
0.97 |
chr11 | 9540333 | 9546363 | chr11:9540333-9546363:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.93 |
0.02 |
0.91 |
0.88 |
0.95 |
0.96 |
0.91 |
0.95 |
0.97 |
0.92 |
0.98 |
0.98 |
chr11 | 10173147 | 10179353 | chr11:10173147-10179353:+:L1PA3:REF | L1PA3 | REF | full-length | SBF2 | 0.31 |
0.97 |
0.98 |
0.96 |
0.91 |
0.98 |
0.97 |
0.97 |
0.97 |
0.97 |
0.98 |
0.99 |
chr11 | 10946356 | 10952722 | chr11:10946356-10952722:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.61 |
0.48 |
0.03 |
0.9 |
0.39 |
0.03 |
0.53 |
0.91 |
0.43 |
0.59 |
0.91 |
chr11 | 11273887 | 11274548 | chr11:11273887-11274548:+:L1P3:REF | L1P3 | REF | 3prime-truncated | GALNT18 | 0.0 |
0.97 |
0.91 |
0.01 |
0.85 |
0.75 |
0.26 |
0.86 |
0.99 |
0.87 |
0.68 |
0.97 |
chr11 | 11711306 | 11717431 | chr11:11711306-11717431:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.74 |
0.88 |
0.36 |
0.92 |
0.75 |
0.54 |
0.78 |
0.87 |
0.67 |
0.75 |
0.97 |
chr11 | 12365966 | 12372097 | chr11:12365966-12372097:+:L1PA6:REF | L1PA6 | REF | full-length | MICALCL | 0.4 |
0.75 |
0.89 |
0.83 |
0.65 |
0.95 |
0.6 |
0.95 |
0.87 |
0.88 |
0.95 |
0.94 |
chr11 | 13479955 | 13483886 | chr11:13479955-13483886:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | PTH | 0.13 |
0.98 |
0.96 |
0.99 |
0.93 |
0.82 |
— | 0.93 |
0.96 |
0.93 |
0.9 |
0.97 |
chr11 | 13651253 | 13657406 | chr11:13651253-13657406:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.95 |
0.9 |
0.34 |
0.9 |
0.67 |
0.1 |
0.8 |
0.89 |
0.84 |
0.81 |
0.95 |
chr11 | 13990407 | 13993017 | chr11:13990407-13993017:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SPON1 | 0.02 |
0.96 |
0.94 |
0.47 |
0.94 |
0.97 |
0.34 |
0.96 |
0.84 |
0.97 |
0.83 |
0.88 |
chr11 | 14628166 | 14634160 | chr11:14628166-14634160:-:L1PA2:REF | L1PA2 | REF | full-length | PSMA1 | 0.98 |
0.98 |
0.97 |
0.97 |
0.71 |
0.83 |
0.98 |
0.91 |
0.94 |
0.97 |
0.9 |
0.97 |
chr11 | 14661315 | 14667447 | chr11:14661315-14667447:+:L1PA3:REF | L1PA3 | REF | full-length | PDE3B | 0.95 |
0.96 |
0.97 |
0.92 |
0.91 |
0.86 |
0.9 |
0.94 |
0.94 |
0.98 |
0.9 |
0.89 |
chr11 | 14715908 | 14721938 | chr11:14715908-14721938:+:L1PA2:REF | L1PA2 | REF | full-length | PDE3B | 0.86 |
0.97 |
0.88 |
0.9 |
0.15 |
0.88 |
0.97 |
0.83 |
0.84 |
0.9 |
0.93 |
0.97 |
chr11 | 16141388 | 16147513 | chr11:16141388-16147513:+:L1PA5:REF | L1PA5 | REF | full-length | SOX6 | 0.86 |
0.97 |
0.97 |
0.24 |
0.88 |
0.77 |
0.88 |
0.99 |
0.95 |
0.97 |
0.97 |
0.69 |
chr11 | 16496332 | 16500000 | chr11:16496332-16500000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | SOX6 | 0.85 |
0.56 |
0.95 |
0.33 |
0.87 |
0.56 |
0.47 |
0.96 |
0.87 |
0.94 |
0.89 |
0.59 |
chr11 | 16520489 | 16526642 | chr11:16520489-16526642:+:L1PA4:REF | L1PA4 | REF | full-length | SOX6 | 0.84 |
0.29 |
0.91 |
0.22 |
0.89 |
0.68 |
0.43 |
0.99 |
0.84 |
0.92 |
0.92 |
0.85 |
chr11 | 18127075 | 18128929 | chr11:18127075-18128929:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | MRGPRX3 | 0.01 |
0.52 |
0.76 |
0.14 |
0.88 |
0.59 |
0.92 |
0.59 |
0.87 |
0.29 |
0.72 |
0.81 |
chr11 | 18658797 | 18664912 | chr11:18658797-18664912:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.25 |
0.64 |
0.33 |
0.94 |
0.48 |
0.34 |
0.5 |
— | 0.48 |
0.45 |
0.69 |
chr11 | 19135060 | 19141079 | chr11:19135060-19141079:+:L1PA3:REF | L1PA3 | REF | full-length | ZDHHC13 | — | — | 0.88 |
0.7 |
0.79 |
0.89 |
0.8 |
0.91 |
— | 0.82 |
0.86 |
— |
chr11 | 19581371 | 19587519 | chr11:19581371-19587519:-:L1PA4:REF | L1PA4 | REF | full-length | NAV2 | 0.0 |
0.84 |
0.89 |
0.91 |
0.91 |
0.95 |
0.4 |
0.92 |
0.96 |
0.82 |
0.96 |
0.85 |