Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 85312419 | 85318459 | chr12:85312419-85318459:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.57 |
0.97 |
0.96 |
0.04 |
0.78 |
0.81 |
0.83 |
0.88 |
0.63 |
0.77 |
0.98 |
chr12 | 85785425 | 85791541 | chr12:85785425-85791541:+:L1PA5:REF | L1PA5 | REF | full-length | RASSF9 | 0.0 |
0.68 |
0.97 |
0.97 |
0.88 |
0.74 |
0.33 |
0.84 |
0.93 |
0.96 |
0.75 |
0.98 |
chr12 | 86686177 | 86690757 | chr12:86686177-86690757:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | MGAT4C | 0.01 |
0.69 |
0.93 |
0.96 |
0.82 |
0.62 |
0.09 |
0.94 |
0.95 |
0.75 |
0.95 |
0.98 |
chr12 | 86763875 | 86770022 | chr12:86763875-86770022:+:L1PA3:REF | L1PA3 | REF | full-length | MGAT4C | 0.01 |
0.49 |
0.84 |
0.92 |
0.91 |
0.63 |
0.4 |
0.88 |
0.95 |
0.77 |
0.9 |
0.98 |
chr12 | 86970395 | 86976516 | chr12:86970395-86976516:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.56 |
0.95 |
0.89 |
0.36 |
0.1 |
0.66 |
0.94 |
0.66 |
0.85 |
0.96 |
chr12 | 87098406 | 87104423 | chr12:87098406-87104423:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.69 |
0.88 |
0.96 |
0.91 |
0.74 |
0.74 |
0.94 |
0.96 |
0.9 |
0.96 |
0.99 |
chr12 | 87393951 | 87400055 | chr12:87393951-87400055:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.97 |
0.83 |
0.96 |
0.94 |
0.62 |
0.37 |
0.85 |
0.96 |
0.76 |
0.94 |
0.97 |
chr12 | 88465064 | 88467375 | chr12:88465064-88467375:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.12 |
0.83 |
0.83 |
0.62 |
0.79 |
0.85 |
0.75 |
0.91 |
0.9 |
0.81 |
0.85 |
0.85 |
chr12 | 88708857 | 88714885 | chr12:88708857-88714885:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.97 |
0.94 |
0.91 |
0.06 |
0.96 |
0.8 |
0.9 |
0.95 |
0.82 |
0.9 |
0.98 |
chr12 | 88846991 | 88853008 | chr12:88846991-88853008:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | 0.94 |
— | — | 0.92 |
— |
chr12 | 90536603 | 90542635 | chr12:90536603-90542635:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.9 |
0.88 |
0.85 |
0.09 |
0.91 |
0.76 |
0.96 |
0.93 |
0.85 |
0.98 |
0.98 |
chr12 | 92313998 | 92320023 | chr12:92313998-92320023:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.82 |
0.94 |
0.92 |
0.84 |
0.63 |
0.9 |
0.78 |
0.94 |
0.94 |
0.85 |
0.86 |
0.97 |
chr12 | 92678206 | 92684347 | chr12:92678206-92684347:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.79 |
0.72 |
0.56 |
0.76 |
0.67 |
0.63 |
0.74 |
0.76 |
0.75 |
0.76 |
0.8 |
chr12 | 95923545 | 95929565 | chr12:95923545-95929565:-:L1PA3:REF | L1PA3 | REF | full-length | CCDC38 | 0.01 |
0.89 |
0.89 |
0.75 |
0.9 |
0.69 |
0.79 |
0.82 |
0.92 |
0.74 |
0.84 |
0.96 |
chr12 | 96315942 | 96321971 | chr12:96315942-96321971:+:L1PA2:REF | L1PA2 | REF | full-length | CDK17 | 0.01 |
0.01 |
0.02 |
0.33 |
0.07 |
0.87 |
0.94 |
0.73 |
0.26 |
0.01 |
0.85 |
0.01 |
chr12 | 96723682 | 96729837 | chr12:96723682-96729837:-:L1PA3:REF | L1PA3 | REF | full-length | CFAP54 | 0.01 |
0.93 |
0.93 |
0.76 |
0.51 |
0.85 |
0.87 |
0.91 |
0.86 |
0.62 |
0.88 |
0.92 |
chr12 | 97349408 | 97355558 | chr12:97349408-97355558:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.97 |
0.7 |
0.16 |
0.92 |
0.55 |
0.73 |
0.71 |
0.87 |
0.37 |
0.61 |
0.33 |
chr12 | 97603217 | 97609364 | chr12:97603217-97609364:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.67 |
0.68 |
0.57 |
0.79 |
0.54 |
0.63 |
0.64 |
0.83 |
0.58 |
0.62 |
0.65 |
chr12 | 97651133 | 97657167 | chr12:97651133-97657167:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.54 |
0.61 |
0.26 |
0.67 |
0.55 |
0.62 |
0.52 |
0.94 |
0.18 |
0.62 |
0.42 |
chr12 | 97723839 | 97729872 | chr12:97723839-97729872:+:L1PA3:REF | L1PA3 | REF | full-length | LOC643711 | 0.04 |
0.93 |
0.79 |
0.69 |
0.71 |
0.71 |
0.85 |
0.85 |
0.85 |
0.54 |
0.81 |
0.83 |
chr12 | 99185443 | 99191844 | chr12:99185443-99191844:+:L1PA7:REF | L1PA7 | REF | full-length | ANKS1B | 0.0 |
— | 0.34 |
0.0 |
0.4 |
0.4 |
0.02 |
0.42 |
— | 0.01 |
0.21 |
0.1 |
chr12 | 99237939 | 99244029 | chr12:99237939-99244029:+:L1PA6:REF | L1PA6 | REF | full-length | ANKS1B | 0.02 |
0.67 |
0.16 |
0.03 |
0.53 |
0.18 |
0.01 |
0.04 |
0.85 |
0.0 |
0.17 |
0.05 |
chr12 | 99315677 | 99321808 | chr12:99315677-99321808:-:L1PA5:REF | L1PA5 | REF | full-length | ANKS1B | 0.03 |
0.7 |
0.55 |
0.12 |
0.62 |
0.49 |
0.05 |
0.46 |
0.86 |
0.18 |
0.38 |
0.55 |
chr12 | 99463307 | 99469450 | chr12:99463307-99469450:+:L1PA3:REF | L1PA3 | REF | full-length | ANKS1B | 0.01 |
0.95 |
0.95 |
0.6 |
0.86 |
0.75 |
0.44 |
0.7 |
0.9 |
0.59 |
0.67 |
0.72 |
chr12 | 99740600 | 99740977 | chr12:99740600-99740977:+:L1P3:REF | L1P3 | REF | 3prime-truncated | ANKS1B | — | — | 0.5 |
— | 0.9 |
— | — | 0.52 |
— | — | 0.44 |
— |
chr12 | 100636823 | 100642967 | chr12:100636823-100642967:-:L1PA4:REF | L1PA4 | REF | full-length | GAS2L3 | 0.07 |
0.96 |
0.88 |
0.66 |
0.88 |
0.95 |
0.91 |
0.97 |
0.95 |
0.71 |
0.97 |
0.98 |
chr12 | 101146043 | 101152064 | chr12:101146043-101152064:+:L1HS:REF | L1HS | REF | full-length | SLC5A8 | 0.01 |
0.95 |
0.95 |
0.76 |
0.04 |
0.84 |
0.87 |
0.87 |
0.78 |
0.79 |
0.94 |
0.97 |
chr12 | 102307781 | 102313768 | chr12:102307781-102313768:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.21 |
0.92 |
0.92 |
0.69 |
0.05 |
0.9 |
0.83 |
0.86 |
0.91 |
0.77 |
0.9 |
0.89 |
chr12 | 102827177 | 102833208 | chr12:102827177-102833208:-:L1PA2:REF | L1PA2 | REF | full-length | LINC00485 | 0.03 |
0.82 |
0.91 |
0.71 |
0.21 |
0.78 |
0.01 |
0.76 |
0.81 |
0.64 |
0.74 |
0.88 |
chr12 | 103424373 | 103425684 | chr12:103424373-103425684:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | C12orf42 | 0.0 |
0.85 |
0.47 |
0.05 |
0.84 |
0.27 |
0.43 |
0.38 |
0.84 |
0.21 |
0.33 |
0.24 |
chr12 | 103485168 | 103490087 | chr12:103485168-103490087:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | C12orf42 | 0.01 |
0.91 |
0.74 |
0.23 |
0.86 |
0.45 |
0.55 |
0.44 |
0.89 |
0.38 |
0.49 |
0.67 |
chr12 | 103608441 | 103613835 | chr12:103608441-103613835:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | STAB2 | 0.0 |
0.96 |
0.91 |
0.49 |
0.9 |
0.71 |
0.5 |
0.68 |
0.85 |
0.56 |
0.83 |
0.9 |
chr12 | 104878332 | 104884474 | chr12:104878332-104884474:-:L1PA5:REF | L1PA5 | REF | full-length | SLC41A2 | 0.09 |
0.95 |
0.97 |
0.98 |
0.92 |
0.88 |
0.95 |
0.88 |
0.93 |
0.87 |
0.88 |
0.97 |
chr12 | 105628261 | 105634450 | chr12:105628261-105634450:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.95 |
0.95 |
0.83 |
0.11 |
0.85 |
0.87 |
0.8 |
0.67 |
0.85 |
0.85 |
0.91 |
chr12 | 105776064 | 105782085 | chr12:105776064-105782085:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.66 |
0.96 |
0.92 |
0.69 |
0.92 |
0.65 |
0.92 |
0.96 |
0.92 |
0.9 |
0.94 |
chr12 | 106465469 | 106471598 | chr12:106465469-106471598:-:L1PA7:REF | L1PA7 | REF | full-length | POLR3B | 1.0 |
1.0 |
0.96 |
1.0 |
0.89 |
0.97 |
0.98 |
0.96 |
— | 1.0 |
0.56 |
1.0 |
chr12 | 106471865 | 106477891 | chr12:106471865-106477891:-:L1PA2:REF | L1PA2 | REF | full-length | POLR3B | 0.84 |
0.82 |
0.91 |
0.98 |
0.04 |
0.87 |
— | 0.79 |
— | 0.65 |
0.91 |
0.96 |
chr12 | 108996947 | 109000000 | chr12:108996947-109000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | SVOP | 0.02 |
0.96 |
0.91 |
0.84 |
0.1 |
0.84 |
0.92 |
0.86 |
0.77 |
0.81 |
0.86 |
0.95 |
chr12 | 112621197 | 112627228 | chr12:112621197-112627228:+:L1PA2:REF | L1PA2 | REF | full-length | RPH3A | 0.07 |
0.93 |
0.82 |
0.76 |
0.16 |
0.73 |
0.92 |
0.7 |
0.69 |
0.76 |
0.69 |
0.94 |
chr12 | 115285122 | 115291136 | chr12:115285122-115291136:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.9 |
0.94 |
0.78 |
0.66 |
0.94 |
0.91 |
0.92 |
0.94 |
0.89 |
0.87 |
0.81 |
chr12 | 119104817 | 119110953 | chr12:119104817-119110953:-:L1PA5:REF | L1PA5 | REF | full-length | SRRM4 | 0.01 |
0.45 |
0.63 |
0.22 |
0.86 |
0.68 |
0.52 |
0.67 |
0.95 |
0.16 |
— | 0.7 |
chr12 | 126299023 | 126305038 | chr12:126299023-126305038:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.53 |
0.8 |
0.72 |
0.12 |
0.89 |
0.82 |
0.84 |
0.98 |
0.66 |
0.85 |
0.93 |
chr12 | 127094605 | 127100631 | chr12:127094605-127100631:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.84 |
0.34 |
0.77 |
0.61 |
0.79 |
0.88 |
0.74 |
0.77 |
0.92 |
0.34 |
0.73 |
0.13 |
chr12 | 127865855 | 127871882 | chr12:127865855-127871882:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02393 | — | 0.58 |
0.76 |
— | 0.97 |
0.75 |
0.64 |
0.63 |
— | 0.53 |
0.76 |
0.79 |
chr12 | 128491850 | 128497975 | chr12:128491850-128497975:-:L1PA5:REF | L1PA5 | REF | full-length | TMEM132C | 0.01 |
0.16 |
0.45 |
0.22 |
0.83 |
0.58 |
0.29 |
0.61 |
0.93 |
0.21 |
0.6 |
0.68 |
chr12 | 129037558 | 129043695 | chr12:129037558-129043695:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.2 |
0.72 |
0.39 |
0.9 |
0.59 |
0.46 |
0.74 |
0.78 |
0.44 |
0.73 |
0.69 |
chr12 | 133244941 | 133251091 | chr12:133244941-133251091:+:L1PA4:REF | L1PA4 | REF | full-length | ANHX | 0.0 |
0.29 |
0.56 |
0.0 |
0.82 |
0.7 |
0.03 |
0.8 |
0.87 |
0.03 |
0.79 |
0.85 |
chr13 | 18503477 | 18509621 | chr13:18503477-18509621:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.22 |
0.41 |
0.46 |
0.79 |
0.65 |
0.21 |
0.64 |
0.83 |
0.26 |
0.67 |
0.32 |
chr13 | 18983770 | 18989849 | chr13:18983770-18989849:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.13 |
0.75 |
0.38 |
0.03 |
0.75 |
0.3 |
0.18 |
0.36 |
0.6 |
0.04 |
0.28 |
0.09 |
chr13 | 19103712 | 19109724 | chr13:19103712-19109724:-:L1PA2:REF | L1PA2 | REF | full-length | LOC107984132 | 0.06 |
0.54 |
0.79 |
0.58 |
0.05 |
0.52 |
0.01 |
0.58 |
0.92 |
0.23 |
0.61 |
0.84 |