Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 248527957 | 248533941 | chr1:248527957-248533941:+:L1PA3:REF | L1PA3 | REF | full-length | OR2G6 | 0.04 |
0.26 |
0.53 |
0.41 |
0.83 |
0.65 |
0.55 |
0.7 |
0.82 |
0.36 |
0.68 |
0.66 |
chr2 | 799542 | 805567 | chr2:799542-805567:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01115 | 0.13 |
0.07 |
0.89 |
0.66 |
0.55 |
0.75 |
0.62 |
0.75 |
0.88 |
0.84 |
0.76 |
0.84 |
chr2 | 3030542 | 3033219 | chr2:3030542-3033219:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC01250 | 0.0 |
0.21 |
0.69 |
0.26 |
0.91 |
0.61 |
0.6 |
0.58 |
0.95 |
0.29 |
0.56 |
0.6 |
chr2 | 3369246 | 3375395 | chr2:3369246-3375395:+:L1PA3:REF | L1PA3 | REF | full-length | EIPR1 | 0.89 |
0.01 |
0.9 |
0.01 |
0.82 |
0.9 |
0.15 |
0.9 |
0.89 |
0.9 |
0.9 |
0.9 |
chr2 | 3794364 | 3800395 | chr2:3794364-3800395:-:L1PA3:REF | L1PA3 | REF | full-length | DCDC2C | 0.08 |
0.94 |
0.88 |
0.6 |
0.89 |
0.74 |
0.72 |
0.84 |
0.91 |
0.49 |
0.82 |
0.76 |
chr2 | 4157808 | 4163833 | chr2:4157808-4163833:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.53 |
0.48 |
0.28 |
0.74 |
0.64 |
0.29 |
0.69 |
0.92 |
0.13 |
0.68 |
0.59 |
chr2 | 4642968 | 4648965 | chr2:4642968-4648965:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01249 | 0.01 |
0.67 |
0.96 |
0.24 |
0.22 |
0.79 |
0.67 |
0.78 |
0.92 |
0.4 |
0.78 |
0.74 |
chr2 | 9038331 | 9044482 | chr2:9038331-9044482:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.7 |
0.94 |
0.8 |
0.53 |
0.87 |
— | 0.32 |
0.9 |
0.95 |
0.78 |
0.89 |
0.96 |
chr2 | 9860962 | 9867093 | chr2:9860962-9867093:+:L1PA4:REF | L1PA4 | REF | full-length | TAF1B | 0.98 |
0.99 |
0.97 |
0.98 |
0.92 |
0.99 |
0.97 |
0.98 |
0.98 |
0.98 |
0.97 |
0.97 |
chr2 | 11000000 | 11002136 | chr2:11000000-11002136:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.07 |
0.96 |
0.96 |
0.7 |
0.65 |
0.9 |
0.82 |
0.96 |
0.88 |
0.89 |
0.96 |
0.95 |
chr2 | 11881460 | 11887603 | chr2:11881460-11887603:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.8 |
0.85 |
0.95 |
0.2 |
0.93 |
0.78 |
0.45 |
0.7 |
0.95 |
0.42 |
0.85 |
0.96 |
chr2 | 12521757 | 12527771 | chr2:12521757-12527771:-:L1PA2:REF | L1PA2 | REF | full-length | MIR3681HG | 0.88 |
0.84 |
0.91 |
0.62 |
0.88 |
0.92 |
0.76 |
0.89 |
— | 0.71 |
0.88 |
0.76 |
chr2 | 13733270 | 13739284 | chr2:13733270-13739284:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | 0.52 |
— | 0.57 |
— | 0.78 |
— | — | — | — |
chr2 | 14099133 | 14105291 | chr2:14099133-14105291:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.6 |
0.73 |
0.52 |
0.62 |
0.71 |
0.5 |
0.63 |
0.94 |
0.23 |
0.63 |
0.69 |
chr2 | 14783324 | 14789477 | chr2:14783324-14789477:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.88 |
0.66 |
0.33 |
0.83 |
0.69 |
0.79 |
0.72 |
0.83 |
0.14 |
0.67 |
0.52 |
chr2 | 14848064 | 14854078 | chr2:14848064-14854078:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.91 |
0.85 |
0.57 |
0.31 |
0.8 |
0.77 |
0.79 |
0.92 |
0.48 |
0.76 |
0.82 |
chr2 | 15316249 | 15322384 | chr2:15316249-15322384:+:L1PA6:REF | L1PA6 | REF | full-length | NBAS | 0.92 |
0.97 |
0.97 |
0.96 |
0.8 |
0.94 |
0.98 |
0.97 |
0.91 |
0.96 |
0.98 |
0.98 |
chr2 | 15439500 | 15445667 | chr2:15439500-15445667:+:L1PA3:REF | L1PA3 | REF | full-length | NBAS | 0.92 |
0.97 |
0.97 |
0.92 |
0.92 |
0.98 |
0.98 |
0.98 |
0.95 |
0.96 |
0.97 |
0.5 |
chr2 | 16233958 | 16235593 | chr2:16233958-16235593:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.24 |
0.97 |
0.94 |
0.74 |
0.67 |
0.76 |
0.93 |
0.81 |
0.92 |
0.87 |
0.82 |
0.91 |
chr2 | 16593725 | 16599758 | chr2:16593725-16599758:-:L1HS:REF | L1HS | REF | full-length | FAM49A | 0.04 |
0.96 |
0.94 |
0.71 |
0.29 |
0.87 |
0.89 |
0.93 |
0.94 |
0.85 |
0.88 |
0.82 |
chr2 | 18012016 | 18018024 | chr2:18012016-18018024:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.82 |
0.91 |
0.61 |
0.24 |
0.88 |
0.65 |
0.87 |
0.92 |
0.44 |
0.88 |
0.88 |
chr2 | 18692198 | 18698337 | chr2:18692198-18698337:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.99 |
0.82 |
0.23 |
0.99 |
0.87 |
0.88 |
0.92 |
0.92 |
0.77 |
0.93 |
0.68 |
chr2 | 19089266 | 19095388 | chr2:19089266-19095388:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.93 |
0.95 |
0.05 |
0.83 |
0.99 |
0.89 |
0.99 |
0.94 |
0.72 |
0.75 |
0.53 |
chr2 | 19305839 | 19311862 | chr2:19305839-19311862:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.15 |
0.96 |
0.72 |
0.02 |
0.94 |
0.83 |
0.94 |
0.93 |
0.68 |
0.98 |
0.96 |
chr2 | 20872293 | 20875989 | chr2:20872293-20875989:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.68 |
0.54 |
0.09 |
0.84 |
0.42 |
0.53 |
0.45 |
0.8 |
0.02 |
0.44 |
0.53 |
chr2 | 20905451 | 20911612 | chr2:20905451-20911612:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.79 |
0.85 |
0.54 |
0.93 |
0.8 |
0.74 |
0.76 |
0.94 |
0.38 |
0.81 |
0.81 |
chr2 | 21208575 | 21214737 | chr2:21208575-21214737:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.22 |
0.51 |
0.75 |
0.36 |
0.9 |
0.74 |
0.19 |
0.77 |
0.98 |
0.37 |
0.87 |
0.57 |
chr2 | 21335938 | 21342064 | chr2:21335938-21342064:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.3 |
0.67 |
0.21 |
0.84 |
0.57 |
0.45 |
0.68 |
0.89 |
0.18 |
0.75 |
0.35 |
chr2 | 21903319 | 21909344 | chr2:21903319-21909344:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.37 |
0.79 |
0.68 |
0.54 |
0.86 |
0.74 |
0.9 |
0.94 |
0.53 |
0.96 |
0.77 |
chr2 | 22156442 | 22162464 | chr2:22156442-22162464:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.11 |
0.53 |
0.44 |
0.85 |
0.67 |
0.17 |
0.72 |
0.92 |
0.28 |
0.82 |
0.63 |
chr2 | 22984153 | 22990168 | chr2:22984153-22990168:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.78 |
0.89 |
0.68 |
0.45 |
0.79 |
0.8 |
0.82 |
0.89 |
0.61 |
0.78 |
0.85 |
chr2 | 23171551 | 23177697 | chr2:23171551-23177697:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.29 |
0.65 |
0.15 |
0.82 |
— | 0.35 |
0.54 |
0.88 |
0.08 |
0.44 |
0.2 |
chr2 | 23224851 | 23230886 | chr2:23224851-23230886:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.62 |
0.79 |
0.58 |
0.2 |
0.68 |
0.69 |
0.65 |
0.73 |
0.54 |
0.65 |
0.71 |
chr2 | 23736568 | 23742711 | chr2:23736568-23742711:+:L1PA4:REF | L1PA4 | REF | full-length | ATAD2B | 0.84 |
0.93 |
0.97 |
0.98 |
0.85 |
0.98 |
0.97 |
0.96 |
0.9 |
0.97 |
0.98 |
0.98 |
chr2 | 24095157 | 24101258 | chr2:24095157-24101258:+:L1PA6:REF | L1PA6 | REF | full-length | FAM228B | 0.69 |
0.87 |
0.96 |
0.81 |
0.8 |
0.89 |
0.16 |
0.85 |
0.79 |
0.9 |
0.94 |
0.97 |
chr2 | 24800323 | 24806471 | chr2:24800323-24806471:-:L1PA4:REF | L1PA4 | REF | full-length | CENPO | 0.91 |
0.02 |
0.93 |
0.24 |
0.93 |
0.98 |
0.91 |
0.99 |
0.87 |
0.94 |
0.98 |
0.95 |
chr2 | 30904198 | 30910223 | chr2:30904198-30910223:+:L1PA2:REF | L1PA2 | REF | full-length | GALNT14 | 0.04 |
0.99 |
0.9 |
0.53 |
0.55 |
0.87 |
0.83 |
0.78 |
0.76 |
0.91 |
0.69 |
0.9 |
chr2 | 32100467 | 32106586 | chr2:32100467-32106586:-:L1PA5:REF | L1PA5 | REF | full-length | SPAST | 0.92 |
0.95 |
0.96 |
0.97 |
0.9 |
0.87 |
0.98 |
0.83 |
1.0 |
0.93 |
0.91 |
0.99 |
chr2 | 33170013 | 33176199 | chr2:33170013-33176199:+:L1PA3:REF | L1PA3 | REF | full-length | LTBP1 | 0.63 |
0.96 |
0.97 |
0.4 |
0.83 |
0.92 |
0.68 |
0.98 |
0.97 |
0.96 |
0.99 |
0.97 |
chr2 | 34558063 | 34561457 | chr2:34558063-34561457:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.65 |
0.15 |
0.12 |
0.88 |
0.3 |
0.13 |
0.31 |
0.92 |
0.02 |
0.31 |
0.6 |
chr2 | 35012447 | 35018591 | chr2:35012447-35018591:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.58 |
0.44 |
0.23 |
— | — | 0.32 |
0.6 |
0.93 |
0.33 |
0.62 |
0.54 |
chr2 | 35106860 | 35113009 | chr2:35106860-35113009:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.02 |
0.54 |
0.33 |
0.87 |
0.61 |
0.33 |
0.65 |
0.97 |
0.09 |
0.73 |
0.75 |
chr2 | 35319757 | 35325900 | chr2:35319757-35325900:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.94 |
0.4 |
0.32 |
0.9 |
0.5 |
0.45 |
0.65 |
0.76 |
0.1 |
0.53 |
0.71 |
chr2 | 35563061 | 35569205 | chr2:35563061-35569205:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.52 |
0.13 |
0.02 |
0.81 |
0.23 |
0.2 |
0.48 |
0.62 |
0.01 |
0.34 |
0.56 |
chr2 | 35654287 | 35654294 | chr2:35654287-35654294:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.74 |
0.29 |
— | 0.79 |
0.75 |
— | — | — | — |
chr2 | 36112506 | 36118537 | chr2:36112506-36118537:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.83 |
0.81 |
0.68 |
0.07 |
0.77 |
0.81 |
0.84 |
0.95 |
0.62 |
0.84 |
0.89 |
chr2 | 37956656 | 37963165 | chr2:37956656-37963165:-:L1PA7:REF | L1PA7 | REF | full-length | RMDN2 | 0.11 |
0.67 |
0.74 |
0.53 |
0.86 |
0.71 |
0.66 |
0.8 |
— | 0.68 |
0.73 |
1.0 |
chr2 | 38132407 | 38138592 | chr2:38132407-38138592:-:L1PA4:REF | L1PA4 | REF | full-length | CYP1B1-AS1 | 0.04 |
0.92 |
0.9 |
0.93 |
0.91 |
0.81 |
0.7 |
0.96 |
0.96 |
0.85 |
0.88 |
0.89 |
chr2 | 39575018 | 39581152 | chr2:39575018-39581152:-:L1PA5:REF | L1PA5 | REF | full-length | MAP4K3-DT | 0.52 |
0.94 |
0.92 |
0.92 |
0.93 |
0.96 |
0.98 |
0.93 |
0.99 |
0.87 |
0.97 |
0.98 |
chr2 | 40008598 | 40014619 | chr2:40008598-40014619:-:L1PA2:REF | L1PA2 | REF | full-length | SLC8A1-AS1 | 0.03 |
0.76 |
0.75 |
0.67 |
0.54 |
0.79 |
0.64 |
0.8 |
0.82 |
0.8 |
0.83 |
0.74 |