Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14 | 55861624 | 55863538 | chr14:55861624-55863538:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.07 |
0.91 |
0.92 |
0.93 |
0.93 |
0.9 |
0.64 |
0.89 |
0.95 |
0.74 |
0.96 |
0.96 |
chr14 | 56014010 | 56020042 | chr14:56014010-56020042:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.95 |
0.9 |
0.84 |
0.93 |
0.84 |
0.77 |
0.86 |
— | 0.85 |
— | 0.86 |
chr14 | 56441818 | 56447831 | chr14:56441818-56447831:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.92 |
0.43 |
0.89 |
0.76 |
0.65 |
0.15 |
0.7 |
0.94 |
0.32 |
0.33 |
0.89 |
chr14 | 56667527 | 56673561 | chr14:56667527-56673561:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.52 |
0.84 |
0.82 |
0.91 |
0.49 |
0.77 |
0.89 |
0.94 |
0.73 |
0.8 |
0.86 |
0.85 |
chr14 | 57112210 | 57118214 | chr14:57112210-57118214:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.8 |
0.93 |
— | 0.05 |
0.76 |
0.84 |
0.8 |
0.2 |
0.59 |
0.8 |
0.01 |
chr14 | 57338082 | 57344117 | chr14:57338082-57344117:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.11 |
0.96 |
0.97 |
0.82 |
0.18 |
0.86 |
0.89 |
0.89 |
0.81 |
0.91 |
0.93 |
0.95 |
chr14 | 57513490 | 57519696 | chr14:57513490-57519696:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.66 |
0.87 |
0.01 |
0.8 |
0.5 |
0.43 |
0.4 |
0.9 |
0.43 |
0.42 |
0.3 |
chr14 | 58032539 | 58038561 | chr14:58032539-58038561:+:L1PA2:REF | L1PA2 | REF | full-length | ARMH4 | 0.16 |
0.93 |
0.96 |
0.74 |
0.11 |
0.89 |
0.78 |
0.91 |
0.95 |
0.92 |
0.91 |
0.94 |
chr14 | 59409450 | 59415609 | chr14:59409450-59415609:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.43 |
0.94 |
0.94 |
0.8 |
0.91 |
0.79 |
0.97 |
0.97 |
0.93 |
0.91 |
0.97 |
0.97 |
chr14 | 59946504 | 59952523 | chr14:59946504-59952523:-:L1PA2:REF | L1PA2 | REF | full-length | LRRC9 | 0.01 |
0.82 |
0.54 |
0.85 |
0.06 |
0.72 |
0.88 |
0.82 |
0.41 |
— | 0.81 |
0.97 |
chr14 | 59991331 | 59994156 | chr14:59991331-59994156:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LRRC9 | 0.02 |
0.89 |
0.91 |
0.4 |
0.9 |
0.66 |
0.76 |
0.74 |
0.87 |
0.85 |
0.75 |
0.97 |
chr14 | 60523259 | 60529424 | chr14:60523259-60529424:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.68 |
0.77 |
0.19 |
0.82 |
0.51 |
0.02 |
0.6 |
0.93 |
0.77 |
0.41 |
0.96 |
chr14 | 60908337 | 60914469 | chr14:60908337-60914469:-:L1PA4:REF | L1PA4 | REF | full-length | MNAT1 | 0.93 |
0.94 |
0.97 |
0.97 |
0.9 |
0.98 |
0.98 |
0.97 |
0.98 |
0.94 |
0.98 |
0.98 |
chr14 | 61009388 | 61015470 | chr14:61009388-61015470:-:L1PA4:REF | L1PA4 | REF | full-length | SLC38A6 | 0.65 |
0.98 |
0.98 |
0.77 |
0.76 |
0.81 |
0.64 |
0.64 |
0.78 |
0.95 |
0.98 |
0.63 |
chr14 | 61055116 | 61061148 | chr14:61055116-61061148:-:L1HS:REF | L1HS | REF | full-length | SLC38A6 | 0.96 |
0.98 |
0.97 |
0.97 |
0.17 |
0.97 |
0.98 |
0.97 |
0.96 |
0.97 |
0.98 |
0.99 |
chr14 | 62045454 | 62051619 | chr14:62045454-62051619:-:L1PA4:REF | L1PA4 | REF | full-length | SYT16 | 0.01 |
0.88 |
0.76 |
0.53 |
0.91 |
0.8 |
0.31 |
0.82 |
0.83 |
0.64 |
0.93 |
0.66 |
chr14 | 62535851 | 62541882 | chr14:62535851-62541882:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.82 |
0.79 |
0.88 |
0.13 |
0.81 |
0.8 |
0.87 |
0.94 |
0.79 |
0.9 |
0.87 |
chr14 | 62636558 | 62642711 | chr14:62636558-62642711:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.91 |
0.81 |
0.93 |
0.9 |
0.85 |
0.79 |
0.8 |
0.95 |
0.89 |
0.84 |
0.84 |
chr14 | 63116706 | 63122735 | chr14:63116706-63122735:-:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.87 |
0.86 |
0.93 |
0.09 |
0.83 |
0.83 |
0.89 |
0.93 |
0.87 |
0.83 |
0.87 |
chr14 | 66953145 | 66953147 | chr14:66953145-66953147:-:L1HS:NONREF | L1HS | KNR | — | GPHN | — | — | — | — | — | — | — | 0.83 |
— | — | 0.83 |
— |
chr14 | 67062673 | 67068092 | chr14:67062673-67068092:-:L1P2:REF | L1P2 | REF | 3prime-truncated | GPHN | 0.24 |
0.57 |
0.92 |
0.95 |
0.71 |
0.99 |
0.96 |
0.93 |
0.9 |
0.85 |
0.94 |
0.97 |
chr14 | 67868071 | 67874097 | chr14:67868071-67874097:+:L1PA3:REF | L1PA3 | REF | full-length | RAD51B | 0.93 |
0.16 |
0.98 |
0.98 |
0.95 |
0.97 |
0.98 |
0.98 |
0.97 |
0.96 |
0.97 |
0.98 |
chr14 | 68428765 | 68434891 | chr14:68428765-68434891:-:L1PA5:REF | L1PA5 | REF | full-length | RAD51B | 0.52 |
0.71 |
0.96 |
0.95 |
0.88 |
0.95 |
— | 0.94 |
0.96 |
0.91 |
0.96 |
— |
chr14 | 69415930 | 69422143 | chr14:69415930-69422143:-:L1PA6:REF | L1PA6 | REF | full-length | SLC39A9 | 0.93 |
0.96 |
0.98 |
0.96 |
0.96 |
0.97 |
0.98 |
0.98 |
0.99 |
0.93 |
0.98 |
0.97 |
chr14 | 70475203 | 70476939 | chr14:70475203-70476939:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | ADAM20P1 | 0.28 |
0.59 |
0.93 |
0.9 |
0.12 |
0.93 |
0.96 |
0.91 |
0.96 |
0.91 |
0.91 |
0.97 |
chr14 | 70501314 | 70507441 | chr14:70501314-70507441:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.96 |
0.78 |
0.5 |
0.87 |
0.74 |
0.92 |
0.64 |
0.96 |
0.44 |
0.85 |
0.96 |
chr14 | 70547290 | 70553322 | chr14:70547290-70553322:+:L1HS:REF | L1HS | REF | full-length | — | 0.28 |
0.97 |
0.97 |
0.9 |
0.7 |
0.96 |
0.97 |
0.93 |
0.97 |
0.89 |
0.97 |
0.98 |
chr14 | 71842964 | 71848996 | chr14:71842964-71848996:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.13 |
0.82 |
0.9 |
0.16 |
0.93 |
0.83 |
0.89 |
0.87 |
0.78 |
0.98 |
0.02 |
chr14 | 71876511 | 71878824 | chr14:71876511-71878824:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.98 |
0.33 |
0.0 |
0.88 |
0.39 |
0.03 |
0.34 |
0.93 |
0.03 |
0.41 |
1.0 |
chr14 | 71976262 | 71982313 | chr14:71976262-71982313:-:L1PA3:REF | L1PA3 | REF | full-length | RGS6 | 0.01 |
0.55 |
0.93 |
0.78 |
0.26 |
0.82 |
0.77 |
0.83 |
0.86 |
0.83 |
0.78 |
0.89 |
chr14 | 78536608 | 78542824 | chr14:78536608-78542824:-:L1PA6:REF | L1PA6 | REF | full-length | NRXN3 | 0.0 |
0.03 |
0.3 |
0.08 |
0.81 |
0.21 |
0.02 |
0.21 |
0.71 |
0.01 |
0.23 |
0.16 |
chr14 | 79126178 | 79132202 | chr14:79126178-79132202:-:L1PA3:REF | L1PA3 | REF | full-length | NRXN3 | 0.01 |
0.61 |
0.88 |
0.47 |
0.92 |
0.81 |
0.57 |
0.93 |
0.95 |
0.64 |
0.85 |
0.73 |
chr14 | 79314060 | 79314943 | chr14:79314060-79314943:+:L1HS:REF | L1HS | REF | 3prime-truncated | NRXN3 | 0.01 |
0.87 |
0.97 |
0.59 |
0.21 |
0.82 |
0.66 |
0.96 |
0.93 |
0.94 |
0.94 |
0.82 |
chr14 | 79767758 | 79773791 | chr14:79767758-79773791:+:L1PA3:REF | L1PA3 | REF | full-length | NRXN3 | 0.01 |
0.66 |
0.97 |
0.63 |
0.92 |
0.86 |
0.75 |
0.93 |
0.96 |
0.91 |
0.94 |
0.75 |
chr14 | 80088527 | 80094682 | chr14:80088527-80094682:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.05 |
0.67 |
0.3 |
0.89 |
0.89 |
0.83 |
0.91 |
0.95 |
0.54 |
0.94 |
0.77 |
chr14 | 81859803 | 81860162 | chr14:81859803-81860162:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.04 |
0.84 |
0.79 |
0.76 |
0.84 |
0.79 |
0.54 |
0.8 |
0.95 |
0.58 |
0.81 |
0.82 |
chr14 | 82347549 | 82353568 | chr14:82347549-82353568:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.58 |
0.75 |
0.48 |
0.37 |
— | 0.6 |
0.67 |
0.91 |
0.42 |
0.71 |
0.75 |
chr14 | 83639298 | 83645330 | chr14:83639298-83645330:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.06 |
0.83 |
0.88 |
0.07 |
0.75 |
0.01 |
0.9 |
0.84 |
0.18 |
0.86 |
0.78 |
chr14 | 84653353 | 84656039 | chr14:84653353-84656039:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | 0.03 |
0.93 |
0.71 |
0.82 |
0.41 |
0.03 |
0.72 |
0.8 |
0.02 |
0.61 |
0.04 |
chr14 | 85885595 | 85891616 | chr14:85885595-85891616:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.78 |
0.89 |
0.81 |
0.09 |
0.77 |
0.79 |
0.85 |
0.88 |
0.58 |
— | 0.78 |
chr14 | 86095934 | 86102041 | chr14:86095934-86102041:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02328 | 0.01 |
0.61 |
0.63 |
0.63 |
0.58 |
0.79 |
0.52 |
0.88 |
0.9 |
0.44 |
0.9 |
0.79 |
chr14 | 86105459 | 86111494 | chr14:86105459-86111494:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02328 | 0.02 |
0.54 |
0.7 |
0.58 |
0.81 |
0.76 |
0.49 |
0.85 |
0.88 |
0.33 |
0.9 |
0.64 |
chr14 | 86813730 | 86813929 | chr14:86813730-86813929:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | — | 0.0 |
0.29 |
0.0 |
0.44 |
0.72 |
0.0 |
0.6 |
— | 0.0 |
0.98 |
0.21 |
chr14 | 87354740 | 87360855 | chr14:87354740-87360855:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.5 |
0.82 |
0.49 |
0.93 |
0.83 |
0.82 |
0.86 |
0.96 |
0.58 |
0.9 |
0.81 |
chr14 | 88455733 | 88461846 | chr14:88455733-88461846:-:L1PA4:REF | L1PA4 | REF | full-length | PTPN21 | 0.74 |
0.97 |
0.95 |
0.92 |
0.95 |
0.93 |
0.98 |
0.99 |
0.98 |
0.93 |
0.98 |
0.98 |
chr14 | 90206773 | 90212804 | chr14:90206773-90212804:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.14 |
0.96 |
0.94 |
0.77 |
0.92 |
0.79 |
0.91 |
0.89 |
0.94 |
0.72 |
0.89 |
0.97 |
chr14 | 91430864 | 91436893 | chr14:91430864-91436893:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.82 |
0.84 |
0.89 |
0.93 |
0.65 |
0.85 |
0.86 |
0.88 |
0.93 |
0.87 |
0.89 |
0.91 |
chr14 | 91640244 | 91646233 | chr14:91640244-91646233:-:L1PA2:REF | L1PA2 | REF | full-length | CATSPERB | 0.73 |
0.94 |
0.9 |
0.86 |
0.12 |
0.83 |
0.87 |
0.78 |
0.74 |
0.88 |
0.85 |
0.95 |
chr14 | 92852827 | 92858975 | chr14:92852827-92858975:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.51 |
0.89 |
0.88 |
0.87 |
0.92 |
0.84 |
0.96 |
0.72 |
0.92 |
0.78 |
0.85 |
0.95 |
chr14 | 93413032 | 93419170 | chr14:93413032-93419170:-:L1PA3:REF | L1PA3 | REF | full-length | UNC79 | 0.01 |
0.91 |
0.94 |
0.61 |
0.91 |
0.84 |
0.83 |
0.87 |
0.93 |
0.88 |
0.83 |
0.88 |