Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5 | 43717953 | 43723974 | chr5:43717953-43723974:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.24 |
0.96 |
0.95 |
0.91 |
0.9 |
0.96 |
0.91 |
0.98 |
0.95 |
0.85 |
0.99 |
0.98 |
chr5 | 44040911 | 44044131 | chr5:44040911-44044131:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.94 |
0.05 |
0.6 |
0.88 |
0.39 |
0.14 |
0.58 |
0.82 |
0.03 |
0.83 |
0.95 |
chr5 | 44578944 | 44584955 | chr5:44578944-44584955:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.93 |
0.45 |
0.77 |
0.94 |
0.67 |
0.5 |
0.72 |
0.89 |
0.39 |
0.73 |
0.96 |
chr5 | 44668502 | 44674529 | chr5:44668502-44674529:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.97 |
0.64 |
0.95 |
0.89 |
0.67 |
0.63 |
0.67 |
0.89 |
0.48 |
0.68 |
0.9 |
chr5 | 45346381 | 45352534 | chr5:45346381-45352534:+:L1PA3:REF | L1PA3 | REF | full-length | HCN1 | 0.01 |
0.3 |
0.22 |
— | 0.68 |
0.3 |
0.02 |
0.26 |
0.87 |
0.04 |
0.3 |
0.97 |
chr5 | 45444894 | 45447243 | chr5:45444894-45447243:+:L1P1:REF | L1P1 | REF | 3prime-truncated | HCN1 | 0.01 |
0.52 |
0.76 |
0.57 |
0.76 |
0.65 |
0.75 |
0.63 |
0.94 |
0.55 |
0.67 |
0.84 |
chr5 | 45493599 | 45499615 | chr5:45493599-45499615:-:L1PA3:REF | L1PA3 | REF | full-length | HCN1 | 0.03 |
0.77 |
0.83 |
0.6 |
0.92 |
0.72 |
0.72 |
0.79 |
0.98 |
0.54 |
0.74 |
0.98 |
chr5 | 45580536 | 45586672 | chr5:45580536-45586672:-:L1PA4:REF | L1PA4 | REF | full-length | HCN1 | 0.01 |
0.31 |
0.52 |
0.21 |
0.86 |
0.63 |
0.57 |
0.62 |
0.96 |
0.41 |
0.6 |
0.97 |
chr5 | 45658440 | 45664470 | chr5:45658440-45664470:+:L1PA2:REF | L1PA2 | REF | full-length | HCN1 | 0.04 |
0.72 |
0.8 |
0.76 |
0.41 |
0.83 |
0.73 |
0.82 |
0.93 |
0.6 |
0.79 |
0.97 |
chr5 | 45743085 | 45749194 | chr5:45743085-45749194:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.17 |
0.38 |
0.38 |
0.87 |
0.6 |
0.48 |
0.61 |
0.88 |
0.31 |
0.6 |
0.95 |
chr5 | 45786144 | 45792292 | chr5:45786144-45792292:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.24 |
0.11 |
0.06 |
0.8 |
0.28 |
0.03 |
0.41 |
0.76 |
0.01 |
0.28 |
0.86 |
chr5 | 45832860 | 45838845 | chr5:45832860-45838845:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.51 |
0.4 |
0.33 |
0.88 |
0.51 |
0.43 |
0.62 |
0.78 |
0.19 |
0.48 |
0.94 |
chr5 | 45881229 | 45887211 | chr5:45881229-45887211:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.16 |
0.22 |
0.13 |
0.7 |
0.48 |
0.2 |
0.42 |
0.83 |
0.05 |
0.47 |
0.63 |
chr5 | 50280227 | 50286251 | chr5:50280227-50286251:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.59 |
0.82 |
0.67 |
0.81 |
0.7 |
0.45 |
0.67 |
0.93 |
0.66 |
0.62 |
0.95 |
chr5 | 50330069 | 50336236 | chr5:50330069-50336236:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.96 |
0.69 |
0.13 |
0.71 |
0.44 |
0.09 |
0.57 |
0.8 |
0.35 |
0.39 |
0.93 |
chr5 | 50467523 | 50471398 | chr5:50467523-50471398:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.93 |
0.86 |
0.19 |
0.89 |
0.6 |
0.18 |
0.73 |
0.9 |
0.68 |
0.67 |
0.95 |
chr5 | 50483964 | 50490136 | chr5:50483964-50490136:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.9 |
0.42 |
0.28 |
0.81 |
0.49 |
0.21 |
0.46 |
0.62 |
0.5 |
0.36 |
0.66 |
chr5 | 50494871 | 50495185 | chr5:50494871-50495185:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.73 |
0.29 |
0.04 |
0.6 |
0.39 |
0.02 |
0.56 |
0.41 |
0.39 |
0.33 |
0.97 |
chr5 | 50596109 | 50602273 | chr5:50596109-50602273:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.95 |
0.9 |
0.28 |
0.88 |
0.78 |
0.67 |
0.89 |
0.93 |
0.92 |
0.72 |
0.97 |
chr5 | 51250746 | 51256770 | chr5:51250746-51256770:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.61 |
0.89 |
0.41 |
0.58 |
0.75 |
0.49 |
0.75 |
0.94 |
0.92 |
0.69 |
0.81 |
chr5 | 51304490 | 51310641 | chr5:51304490-51310641:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.64 |
0.83 |
0.64 |
0.9 |
0.78 |
0.35 |
0.77 |
0.92 |
0.9 |
0.74 |
0.88 |
chr5 | 51348667 | 51354822 | chr5:51348667-51354822:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.33 |
0.7 |
0.19 |
0.79 |
0.55 |
0.04 |
0.38 |
0.91 |
0.78 |
0.31 |
0.67 |
chr5 | 51636771 | 51642771 | chr5:51636771-51642771:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.71 |
0.9 |
0.08 |
0.8 |
0.73 |
0.15 |
0.53 |
0.93 |
0.94 |
0.52 |
0.58 |
chr5 | 51785150 | 51791298 | chr5:51785150-51791298:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.59 |
0.6 |
0.11 |
0.87 |
0.54 |
0.03 |
0.45 |
0.88 |
0.78 |
0.5 |
0.57 |
chr5 | 51951743 | 51957834 | chr5:51951743-51957834:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.87 |
0.68 |
0.22 |
0.87 |
0.76 |
0.59 |
0.7 |
0.97 |
0.84 |
0.76 |
0.78 |
chr5 | 52086499 | 52088220 | chr5:52086499-52088220:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.1 |
0.84 |
0.64 |
0.54 |
0.72 |
0.73 |
0.58 |
0.71 |
0.94 |
0.78 |
0.7 |
0.91 |
chr5 | 52097924 | 52102941 | chr5:52097924-52102941:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.37 |
0.21 |
0.03 |
0.76 |
0.27 |
0.01 |
0.17 |
0.86 |
0.4 |
0.22 |
0.53 |
chr5 | 52970664 | 52976801 | chr5:52970664-52976801:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.93 |
0.93 |
0.95 |
0.86 |
0.83 |
0.89 |
0.98 |
0.96 |
0.74 |
0.94 |
0.97 |
chr5 | 53141066 | 53147199 | chr5:53141066-53147199:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.44 |
0.98 |
0.87 |
0.94 |
0.93 |
0.84 |
0.68 |
0.91 |
0.92 |
0.85 |
0.97 |
0.95 |
chr5 | 53660005 | 53665971 | chr5:53660005-53665971:-:L1PA4:REF | L1PA4 | REF | full-length | NDUFS4 | 0.97 |
0.93 |
0.9 |
0.96 |
0.93 |
0.93 |
0.98 |
0.92 |
0.98 |
0.89 |
0.99 |
0.99 |
chr5 | 53750516 | 53751979 | chr5:53750516-53751979:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.8 |
0.85 |
0.03 |
0.91 |
0.83 |
0.35 |
0.68 |
1.0 |
0.87 |
0.7 |
1.0 |
chr5 | 55012859 | 55014226 | chr5:55012859-55014226:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | LOC102467081 | 0.02 |
0.6 |
0.33 |
0.02 |
0.76 |
0.74 |
0.02 |
0.58 |
0.92 |
0.16 |
0.71 |
0.32 |
chr5 | 55075360 | 55081502 | chr5:55075360-55081502:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.59 |
0.87 |
0.56 |
0.84 |
0.86 |
0.62 |
0.83 |
0.94 |
0.56 |
0.82 |
0.91 |
chr5 | 55096561 | 55101301 | chr5:55096561-55101301:+:L1P2:REF | L1P2 | REF | 3prime-truncated | GZMA | 0.01 |
0.84 |
0.82 |
0.02 |
0.84 |
0.62 |
0.04 |
0.56 |
0.88 |
0.54 |
0.56 |
0.6 |
chr5 | 55803330 | 55809463 | chr5:55803330-55809463:-:L1PA3:REF | L1PA3 | REF | full-length | DDX4 | 0.01 |
0.97 |
0.84 |
0.46 |
0.91 |
0.69 |
0.64 |
0.77 |
0.94 |
0.8 |
0.84 |
0.96 |
chr5 | 57351496 | 57357526 | chr5:57351496-57357526:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.17 |
0.94 |
0.95 |
0.92 |
0.19 |
0.89 |
0.84 |
0.96 |
0.94 |
0.75 |
0.98 |
0.98 |
chr5 | 57869385 | 57870876 | chr5:57869385-57870876:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.13 |
0.98 |
0.97 |
0.95 |
0.9 |
0.92 |
0.69 |
0.95 |
0.98 |
0.8 |
0.98 |
0.97 |
chr5 | 57966585 | 57972749 | chr5:57966585-57972749:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
— | 0.97 |
— | — | 0.86 |
0.22 |
— | — | 0.43 |
— | — |
chr5 | 58215915 | 58222036 | chr5:58215915-58222036:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.27 |
0.96 |
0.97 |
0.96 |
0.88 |
0.88 |
0.24 |
0.92 |
0.95 |
0.55 |
0.96 |
0.99 |
chr5 | 58288061 | 58294158 | chr5:58288061-58294158:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.26 |
0.8 |
0.95 |
0.91 |
0.78 |
0.83 |
0.59 |
0.88 |
0.97 |
0.67 |
0.96 |
0.92 |
chr5 | 58384174 | 58390206 | chr5:58384174-58390206:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
— | — | — | 0.91 |
0.91 |
— | — | — | — | 0.95 |
0.97 |
chr5 | 58536154 | 58542290 | chr5:58536154-58542290:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02108 | 0.02 |
0.59 |
0.75 |
0.67 |
0.85 |
0.64 |
0.52 |
0.64 |
0.92 |
0.41 |
0.72 |
0.93 |
chr5 | 58552269 | 58558283 | chr5:58552269-58558283:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02108 | 0.02 |
0.55 |
0.85 |
0.74 |
0.12 |
0.72 |
0.77 |
0.74 |
0.89 |
0.62 |
0.78 |
0.46 |
chr5 | 59394720 | 59400744 | chr5:59394720-59400744:+:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.02 |
0.94 |
0.97 |
0.88 |
0.92 |
0.83 |
0.91 |
0.89 |
0.98 |
0.97 |
0.9 |
0.88 |
chr5 | 60044367 | 60050391 | chr5:60044367-60050391:-:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.0 |
0.58 |
0.75 |
0.61 |
0.82 |
0.74 |
0.31 |
— | 0.91 |
0.5 |
0.73 |
0.63 |
chr5 | 60103870 | 60110024 | chr5:60103870-60110024:+:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.04 |
0.35 |
0.84 |
0.53 |
0.82 |
0.81 |
0.5 |
0.65 |
0.97 |
0.34 |
0.63 |
0.76 |
chr5 | 60420575 | 60426695 | chr5:60420575-60426695:+:L1PA6:REF | L1PA6 | REF | full-length | PDE4D | 0.03 |
0.31 |
0.75 |
0.38 |
0.67 |
0.73 |
0.89 |
0.59 |
0.9 |
0.13 |
0.55 |
0.64 |
chr5 | 60570768 | 60576107 | chr5:60570768-60576107:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.64 |
0.98 |
0.98 |
1.0 |
0.97 |
0.91 |
0.98 |
1.0 |
0.96 |
0.91 |
0.96 |
0.84 |
chr5 | 61238874 | 61245001 | chr5:61238874-61245001:+:L1PA4:REF | L1PA4 | REF | full-length | LINC02057 | 0.01 |
0.96 |
0.93 |
0.91 |
0.89 |
0.89 |
0.63 |
0.9 |
0.95 |
0.79 |
0.96 |
0.97 |
chr5 | 62798974 | 62804997 | chr5:62798974-62804997:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.81 |
0.7 |
0.65 |
0.31 |
0.71 |
0.31 |
0.77 |
— | 0.59 |
0.71 |
0.76 |