Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11 | 89744187 | 89750239 | chr11:89744187-89750239:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.9 |
0.95 |
0.85 |
0.05 |
0.85 |
0.89 |
0.9 |
0.9 |
0.9 |
0.89 |
0.93 |
chr11 | 90089696 | 90095729 | chr11:90089696-90095729:-:L1PA2:REF | L1PA2 | REF | full-length | UBTFL1 | 0.07 |
— | 0.95 |
— | — | — | 0.95 |
0.9 |
— | 0.95 |
— | — |
chr11 | 90400067 | 90406098 | chr11:90400067-90406098:-:L1HS:REF | L1HS | REF | full-length | DISC1FP1 | 0.03 |
0.86 |
0.88 |
0.57 |
0.1 |
0.79 |
0.92 |
0.78 |
0.93 |
0.83 |
0.79 |
0.99 |
chr11 | 90685702 | 90691834 | chr11:90685702-90691834:-:L1PA3:REF | L1PA3 | REF | full-length | DISC1FP1 | 0.0 |
0.74 |
0.53 |
0.11 |
0.79 |
0.5 |
0.32 |
0.53 |
0.93 |
0.22 |
0.54 |
0.97 |
chr11 | 90966271 | 90972302 | chr11:90966271-90972302:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.78 |
0.72 |
0.62 |
0.76 |
0.66 |
0.85 |
0.96 |
0.63 |
0.83 |
0.95 |
chr11 | 92026888 | 92033124 | chr11:92026888-92033124:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.19 |
0.85 |
0.87 |
0.67 |
0.12 |
0.72 |
0.5 |
0.74 |
0.9 |
0.68 |
0.71 |
0.97 |
chr11 | 92169399 | 92175577 | chr11:92169399-92175577:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.87 |
0.95 |
0.66 |
0.84 |
0.85 |
0.6 |
0.88 |
0.99 |
0.91 |
0.88 |
0.92 |
chr11 | 93420986 | 93427031 | chr11:93420986-93427031:+:L1HS:REF | L1HS | REF | full-length | DEUP1 | 0.17 |
— | — | — | — | — | — | — | 0.08 |
0.16 |
0.4 |
— |
chr11 | 93439098 | 93445217 | chr11:93439098-93445217:-:L1PA6:REF | L1PA6 | REF | full-length | DEUP1 | 0.02 |
0.68 |
0.94 |
0.36 |
0.56 |
0.61 |
0.62 |
0.77 |
0.84 |
0.88 |
0.78 |
0.98 |
chr11 | 94036857 | 94042888 | chr11:94036857-94042888:+:L1PA2:REF | L1PA2 | REF | full-length | HEPHL1 | 0.83 |
0.9 |
0.85 |
0.7 |
0.78 |
0.84 |
0.81 |
0.84 |
0.89 |
0.78 |
0.87 |
0.91 |
chr11 | 94232524 | 94238528 | chr11:94232524-94238528:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.75 |
0.71 |
0.5 |
0.74 |
0.73 |
0.56 |
0.78 |
0.91 |
0.33 |
0.79 |
0.87 |
chr11 | 94370376 | 94376521 | chr11:94370376-94376521:+:L1PA4:REF | L1PA4 | REF | full-length | GPR83 | 0.02 |
0.63 |
0.83 |
0.13 |
0.84 |
0.4 |
0.37 |
0.56 |
0.87 |
0.39 |
0.56 |
0.91 |
chr11 | 94384355 | 94390332 | chr11:94384355-94390332:+:L1PA5:REF | L1PA5 | REF | full-length | GPR83 | 0.02 |
0.91 |
0.87 |
0.4 |
0.89 |
0.7 |
0.8 |
0.83 |
0.94 |
0.46 |
0.76 |
0.95 |
chr11 | 95436216 | 95442246 | chr11:95436216-95442246:+:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.9 |
0.96 |
0.81 |
0.7 |
0.9 |
0.8 |
0.9 |
0.96 |
0.82 |
0.91 |
0.95 |
chr11 | 96405620 | 96411665 | chr11:96405620-96411665:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.55 |
0.02 |
0.93 |
0.87 |
0.15 |
0.64 |
0.86 |
0.85 |
0.5 |
0.0 |
0.92 |
0.91 |
chr11 | 96555590 | 96561739 | chr11:96555590-96561739:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.67 |
— | — | 0.75 |
— | 0.86 |
0.88 |
— | 0.96 |
0.61 |
0.79 |
0.88 |
chr11 | 96771827 | 96777820 | chr11:96771827-96777820:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.34 |
0.72 |
0.65 |
0.73 |
0.78 |
0.83 |
0.79 |
0.78 |
0.91 |
0.47 |
0.77 |
0.8 |
chr11 | 97040160 | 97046278 | chr11:97040160-97046278:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.16 |
0.48 |
0.58 |
0.83 |
0.52 |
0.33 |
0.72 |
0.84 |
0.28 |
0.6 |
0.84 |
chr11 | 97922714 | 97924372 | chr11:97922714-97924372:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.65 |
0.13 |
0.11 |
0.62 |
0.9 |
0.54 |
0.32 |
0.62 |
0.93 |
0.11 |
0.7 |
0.57 |
chr11 | 98324881 | 98330921 | chr11:98324881-98330921:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.58 |
0.08 |
0.59 |
0.93 |
0.65 |
0.68 |
0.66 |
0.74 |
0.93 |
0.57 |
0.76 |
0.88 |
chr11 | 100285746 | 100291751 | chr11:100285746-100291751:+:L1PA2:REF | L1PA2 | REF | full-length | CNTN5 | 0.01 |
0.89 |
0.95 |
0.79 |
0.29 |
0.82 |
0.85 |
0.86 |
0.96 |
0.64 |
0.97 |
0.95 |
chr11 | 100409041 | 100415069 | chr11:100409041-100415069:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.75 |
0.88 |
0.65 |
0.71 |
0.63 |
0.49 |
0.86 |
0.9 |
0.42 |
0.94 |
0.81 |
chr11 | 100451858 | 100457873 | chr11:100451858-100457873:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.8 |
0.91 |
0.73 |
0.24 |
0.79 |
0.82 |
0.86 |
0.94 |
0.56 |
0.91 |
0.94 |
chr11 | 100475720 | 100481744 | chr11:100475720-100481744:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.75 |
0.86 |
0.69 |
0.35 |
0.71 |
0.74 |
0.81 |
0.94 |
0.61 |
0.92 |
0.92 |
chr11 | 101462008 | 101467169 | chr11:101462008-101467169:-:L1P3:REF | L1P3 | REF | 3prime-truncated | TRPC6 | 0.0 |
0.96 |
0.9 |
0.41 |
0.83 |
0.97 |
0.76 |
0.96 |
0.97 |
0.82 |
0.97 |
0.98 |
chr11 | 101566581 | 101573018 | chr11:101566581-101573018:+:L1PA7:REF | L1PA7 | REF | full-length | TRPC6 | 0.0 |
— | — | 0.06 |
0.63 |
— | 0.06 |
— | — | 0.26 |
0.85 |
— |
chr11 | 101678417 | 101684557 | chr11:101678417-101684557:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.95 |
0.71 |
0.31 |
0.71 |
0.9 |
0.13 |
0.95 |
0.89 |
0.14 |
0.89 |
0.9 |
chr11 | 101852489 | 101858627 | chr11:101852489-101858627:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.02 |
— | — | — | — | 0.12 |
— | — | — | 0.91 |
— |
chr11 | 102741437 | 102747464 | chr11:102741437-102747464:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.25 |
0.94 |
0.32 |
0.1 |
0.89 |
0.02 |
0.93 |
0.76 |
0.02 |
0.84 |
0.97 |
chr11 | 103136231 | 103142353 | chr11:103136231-103142353:-:L1PA3:REF | L1PA3 | REF | full-length | DYNC2H1 | 0.05 |
— | 0.98 |
— | 0.97 |
0.99 |
0.91 |
0.99 |
— | 0.97 |
0.99 |
0.92 |
chr11 | 103386499 | 103392632 | chr11:103386499-103392632:-:L1PA4:REF | L1PA4 | REF | full-length | DYNC2H1 | 0.01 |
0.97 |
0.8 |
0.89 |
0.74 |
0.89 |
0.52 |
0.89 |
0.92 |
0.8 |
0.8 |
0.88 |
chr11 | 103611227 | 103617451 | chr11:103611227-103617451:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.88 |
0.96 |
0.77 |
0.87 |
0.98 |
0.15 |
0.99 |
0.95 |
0.87 |
0.89 |
0.97 |
chr11 | 105016295 | 105022323 | chr11:105016295-105022323:+:L1PA3:REF | L1PA3 | REF | full-length | CASP5 | 0.01 |
0.79 |
0.87 |
0.98 |
0.29 |
0.9 |
0.8 |
0.93 |
0.94 |
0.25 |
0.97 |
0.98 |
chr11 | 107361810 | 107367839 | chr11:107361810-107367839:+:L1PA2:REF | L1PA2 | REF | full-length | CWF19L2 | 0.98 |
0.98 |
0.98 |
0.99 |
0.62 |
0.99 |
0.98 |
0.99 |
0.97 |
0.98 |
0.98 |
0.98 |
chr11 | 107372762 | 107378780 | chr11:107372762-107378780:+:L1PA3:REF | L1PA3 | REF | full-length | CWF19L2 | 0.38 |
0.88 |
0.94 |
0.89 |
0.52 |
0.87 |
0.98 |
— | 0.71 |
0.94 |
0.98 |
— |
chr11 | 108260626 | 108266643 | chr11:108260626-108266643:+:L1PA2:REF | L1PA2 | REF | full-length | ATM | 0.97 |
0.98 |
0.98 |
0.99 |
0.95 |
0.98 |
0.99 |
0.95 |
0.97 |
0.97 |
0.98 |
0.99 |
chr11 | 108356931 | 108362967 | chr11:108356931-108362967:+:L1PA2:REF | L1PA2 | REF | full-length | ATM | 0.92 |
0.9 |
0.92 |
0.86 |
0.46 |
0.98 |
0.98 |
0.96 |
0.95 |
0.95 |
0.96 |
0.97 |
chr11 | 108373544 | 108379636 | chr11:108373544-108379636:+:L1PA3:REF | L1PA3 | REF | full-length | C11orf65 | 0.84 |
0.95 |
0.98 |
0.93 |
0.94 |
0.97 |
0.97 |
0.97 |
0.98 |
0.98 |
0.98 |
0.98 |
chr11 | 108440855 | 108444618 | chr11:108440855-108444618:+:L1P2:REF | L1P2 | REF | 3prime-truncated | C11orf65 | 0.13 |
0.8 |
0.74 |
0.23 |
0.85 |
0.57 |
0.2 |
0.69 |
0.82 |
0.27 |
0.78 |
0.93 |
chr11 | 108444619 | 108450784 | chr11:108444619-108450784:+:L1PA4:REF | L1PA4 | REF | full-length | C11orf65 | 0.46 |
0.95 |
0.92 |
0.89 |
0.77 |
0.83 |
0.58 |
0.88 |
0.92 |
0.74 |
0.87 |
0.91 |
chr11 | 108685166 | 108685556 | chr11:108685166-108685556:-:L1HS:REF | L1HS | REF | 3prime-truncated | DDX10 | 0.97 |
0.97 |
0.97 |
0.98 |
0.96 |
0.98 |
0.98 |
0.95 |
0.94 |
0.97 |
0.99 |
0.99 |
chr11 | 109177494 | 109183526 | chr11:109177494-109183526:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.79 |
0.81 |
0.62 |
0.32 |
0.74 |
0.6 |
0.76 |
0.87 |
0.5 |
0.75 |
0.91 |
chr11 | 109571381 | 109571839 | chr11:109571381-109571839:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.03 |
0.46 |
0.83 |
0.73 |
0.9 |
0.83 |
0.56 |
0.84 |
0.97 |
0.55 |
0.9 |
0.97 |
chr11 | 112678555 | 112684569 | chr11:112678555-112684569:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.13 |
0.66 |
0.28 |
0.93 |
0.64 |
0.15 |
0.57 |
0.95 |
0.4 |
0.57 |
0.45 |
chr11 | 113656606 | 113662757 | chr11:113656606-113662757:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.68 |
0.87 |
0.83 |
0.74 |
0.9 |
0.79 |
0.63 |
0.77 |
0.86 |
0.75 |
0.84 |
0.87 |
chr11 | 114625663 | 114631683 | chr11:114625663-114631683:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.4 |
0.72 |
0.34 |
0.83 |
0.66 |
0.28 |
0.69 |
0.88 |
0.31 |
0.6 |
0.82 |
chr11 | 114633465 | 114639620 | chr11:114633465-114639620:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.85 |
0.92 |
0.61 |
0.91 |
0.78 |
0.8 |
0.75 |
0.96 |
0.64 |
0.8 |
0.93 |
chr11 | 115024803 | 115024805 | chr11:115024803-115024805:+:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | — | — | — | — | 0.9 |
— | — | — | 0.81 |
— |
chr11 | 115880773 | 115881261 | chr11:115880773-115881261:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.94 |
0.88 |
0.11 |
0.88 |
0.52 |
0.19 |
0.81 |
0.98 |
0.45 |
0.86 |
0.54 |
chr11 | 115966933 | 115973116 | chr11:115966933-115973116:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.56 |
0.95 |
0.09 |
0.68 |
0.61 |
0.37 |
0.83 |
0.41 |
0.66 |
0.67 |
0.68 |