Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17 | 51446677 | 51449322 | chr17:51446677-51449322:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LINC02073 | 0.05 |
0.25 |
0.4 |
— | — | 0.19 |
0.02 |
0.25 |
— | 0.1 |
0.17 |
0.31 |
chr17 | 52403847 | 52409865 | chr17:52403847-52409865:-:L1PA2:REF | L1PA2 | REF | full-length | LINC01982 | 0.01 |
0.58 |
— | 0.52 |
0.77 |
0.71 |
0.72 |
0.71 |
0.95 |
0.49 |
0.72 |
0.93 |
chr17 | 54316374 | 54320132 | chr17:54316374-54320132:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.09 |
0.11 |
0.03 |
0.91 |
0.22 |
0.0 |
0.26 |
0.83 |
0.03 |
0.21 |
0.91 |
chr17 | 55105777 | 55108871 | chr17:55105777-55108871:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | STXBP4 | 0.74 |
0.95 |
0.94 |
0.87 |
0.91 |
0.91 |
0.96 |
0.94 |
0.95 |
0.96 |
0.96 |
0.97 |
chr17 | 55501716 | 55507741 | chr17:55501716-55507741:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.95 |
0.83 |
0.95 |
0.97 |
0.04 |
0.93 |
0.95 |
0.9 |
0.9 |
0.37 |
0.9 |
0.97 |
chr17 | 56002401 | 56008616 | chr17:56002401-56008616:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.4 |
0.76 |
0.56 |
0.85 |
0.73 |
0.5 |
0.67 |
0.93 |
0.5 |
0.73 |
0.69 |
chr17 | 60341533 | 60343056 | chr17:60341533-60343056:-:L1P2:REF | L1P2 | REF | 3prime-truncated | USP32 | 0.95 |
0.97 |
0.99 |
0.97 |
0.92 |
0.98 |
0.98 |
0.99 |
0.94 |
0.98 |
0.99 |
0.98 |
chr17 | 60881440 | 60887474 | chr17:60881440-60887474:-:L1PA2:REF | L1PA2 | REF | full-length | BCAS3 | 0.02 |
0.27 |
0.95 |
0.42 |
0.06 |
0.77 |
0.58 |
0.9 |
0.49 |
0.01 |
0.93 |
0.65 |
chr17 | 61110229 | 61116238 | chr17:61110229-61116238:+:L1PA2:REF | L1PA2 | REF | full-length | BCAS3 | 0.36 |
0.96 |
0.98 |
0.94 |
0.88 |
0.95 |
0.95 |
0.98 |
0.97 |
0.96 |
0.98 |
0.96 |
chr17 | 62356953 | 62363149 | chr17:62356953-62363149:+:L1PA8:REF | L1PA8 | REF | full-length | EFCAB3 | 0.02 |
0.88 |
0.72 |
0.15 |
0.89 |
0.34 |
0.02 |
0.54 |
0.95 |
0.79 |
0.46 |
0.92 |
chr17 | 66596579 | 66602595 | chr17:66596579-66602595:-:L1HS:REF | L1HS | REF | full-length | PRKCA | 0.86 |
0.95 |
0.97 |
0.98 |
0.24 |
0.98 |
0.98 |
0.97 |
0.86 |
0.59 |
0.99 |
0.97 |
chr17 | 66641175 | 66641180 | chr17:66641175-66641180:+:L1HS:NONREF | L1HS | KNR | — | PRKCA | 0.99 |
0.98 |
0.98 |
— | — | — | 0.99 |
— | 0.96 |
0.97 |
— | — |
chr17 | 69000000 | 69005148 | chr17:69000000-69005148:-:L1HS:REF | L1HS | REF | 3prime-truncated | ABCA9 | 0.85 |
0.74 |
0.92 |
0.88 |
0.23 |
0.88 |
0.91 |
0.87 |
0.84 |
0.88 |
0.9 |
0.98 |
chr17 | 69611943 | 69618099 | chr17:69611943-69618099:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01483 | 0.01 |
0.36 |
0.62 |
0.73 |
0.6 |
0.6 |
0.83 |
0.75 |
0.76 |
0.62 |
0.78 |
0.6 |
chr17 | 70458956 | 70464987 | chr17:70458956-70464987:+:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.77 |
0.92 |
0.9 |
0.58 |
0.84 |
0.85 |
0.92 |
— | 0.95 |
0.96 |
0.94 |
chr17 | 71131111 | 71132457 | chr17:71131111-71132457:-:L1P3:REF | L1P3 | REF | 3prime-truncated | CASC17 | 0.0 |
0.49 |
0.9 |
0.04 |
0.91 |
0.73 |
0.04 |
0.89 |
0.91 |
0.93 |
0.89 |
0.97 |
chr17 | 71351959 | 71357889 | chr17:71351959-71357889:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.55 |
0.94 |
0.67 |
0.94 |
0.9 |
0.47 |
0.94 |
0.92 |
0.91 |
0.95 |
0.95 |
chr18 | 535701 | 541755 | chr18:535701-541755:+:L1HS:REF | L1HS | REF | full-length | — | 0.22 |
0.68 |
0.89 |
0.73 |
0.15 |
0.81 |
0.8 |
0.84 |
0.75 |
0.83 |
0.81 |
0.83 |
chr18 | 970858 | 976878 | chr18:970858-976878:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.97 |
0.89 |
0.86 |
0.05 |
0.8 |
0.84 |
0.82 |
0.79 |
0.65 |
0.84 |
0.94 |
chr18 | 1029349 | 1035439 | chr18:1029349-1035439:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.26 |
0.82 |
0.68 |
0.41 |
0.62 |
0.3 |
0.01 |
0.35 |
0.91 |
0.08 |
0.38 |
0.82 |
chr18 | 1516189 | 1522240 | chr18:1516189-1522240:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.61 |
0.82 |
0.73 |
0.05 |
0.72 |
0.77 |
0.77 |
0.98 |
0.36 |
0.79 |
0.92 |
chr18 | 2247167 | 2253196 | chr18:2247167-2253196:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.87 |
0.87 |
0.94 |
0.97 |
0.08 |
0.92 |
0.88 |
0.85 |
0.92 |
0.7 |
0.98 |
0.98 |
chr18 | 2860237 | 2866343 | chr18:2860237-2866343:-:L1PA4:REF | L1PA4 | REF | full-length | EMILIN2 | 0.7 |
0.95 |
0.94 |
0.67 |
0.9 |
0.94 |
0.63 |
0.81 |
0.94 |
0.93 |
0.87 |
0.95 |
chr18 | 4477329 | 4478177 | chr18:4477329-4478177:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.79 |
0.64 |
0.17 |
0.74 |
0.53 |
0.76 |
0.93 |
0.64 |
0.79 |
0.74 |
chr18 | 5004136 | 5010155 | chr18:5004136-5010155:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.03 |
0.04 |
0.86 |
0.02 |
0.13 |
0.01 |
0.09 |
0.02 |
0.01 |
0.08 |
0.95 |
chr18 | 5122003 | 5128135 | chr18:5122003-5128135:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.03 |
0.45 |
0.04 |
0.74 |
0.21 |
0.01 |
0.14 |
0.74 |
0.02 |
0.09 |
0.1 |
chr18 | 5684668 | 5687891 | chr18:5684668-5687891:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.23 |
0.87 |
0.43 |
0.21 |
0.72 |
0.75 |
0.78 |
0.9 |
0.88 |
0.75 |
0.74 |
chr18 | 7966442 | 7972474 | chr18:7966442-7972474:+:L1PA2:REF | L1PA2 | REF | full-length | PTPRM | 0.01 |
0.68 |
0.97 |
0.98 |
0.19 |
0.97 |
0.98 |
0.97 |
0.95 |
0.97 |
0.99 |
0.98 |
chr18 | 8057452 | 8063463 | chr18:8057452-8063463:-:L1PA2:REF | L1PA2 | REF | full-length | PTPRM | 0.02 |
0.72 |
0.95 |
0.97 |
0.14 |
0.9 |
0.58 |
0.96 |
— | 0.88 |
0.94 |
0.04 |
chr18 | 8146320 | 8152115 | chr18:8146320-8152115:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | PTPRM | 0.0 |
— | — | — | — | — | — | — | — | — | — | — |
chr18 | 9982522 | 9983275 | chr18:9982522-9983275:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.02 |
— | — | — | — | — | 0.45 |
— | — | — | 0.72 |
— |
chr18 | 10572668 | 10578678 | chr18:10572668-10578678:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.65 |
0.39 |
— | — | 0.69 |
— | 0.95 |
0.98 |
— | 0.93 |
0.98 |
— |
chr18 | 12139659 | 12141450 | chr18:12139659-12141450:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | ANKRD62 | 0.16 |
0.83 |
0.93 |
0.58 |
0.79 |
0.77 |
0.83 |
0.83 |
0.94 |
0.9 |
0.79 |
0.9 |
chr18 | 12181637 | 12187780 | chr18:12181637-12187780:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.47 |
0.71 |
0.7 |
0.81 |
0.62 |
0.71 |
— | — | 0.67 |
0.66 |
0.91 |
chr18 | 12202444 | 12208458 | chr18:12202444-12208458:-:L1PA2:REF | L1PA2 | REF | full-length | C18orf61 | 0.07 |
0.62 |
0.96 |
0.56 |
0.19 |
0.89 |
0.86 |
0.89 |
0.93 |
0.88 |
0.81 |
0.98 |
chr18 | 13343089 | 13349218 | chr18:13343089-13349218:-:L1PA4:REF | L1PA4 | REF | full-length | LDLRAD4 | 0.01 |
0.98 |
0.94 |
0.42 |
0.91 |
0.84 |
0.92 |
0.78 |
0.96 |
0.67 |
0.72 |
0.87 |
chr18 | 13975860 | 13981891 | chr18:13975860-13981891:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.92 |
0.91 |
0.79 |
0.22 |
0.77 |
0.86 |
0.82 |
0.91 |
0.84 |
0.77 |
0.86 |
chr18 | 14002455 | 14006946 | chr18:14002455-14006946:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.96 |
0.67 |
0.35 |
0.79 |
0.54 |
0.27 |
0.57 |
0.86 |
0.47 |
0.59 |
— |
chr18 | 14037597 | 14043715 | chr18:14037597-14043715:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.93 |
0.56 |
0.07 |
— | — | 0.4 |
0.63 |
0.86 |
— | 0.59 |
0.84 |
chr18 | 14064986 | 14071100 | chr18:14064986-14071100:+:L1PA5:REF | L1PA5 | REF | full-length | ZNF519 | 0.0 |
0.97 |
0.87 |
0.57 |
0.71 |
0.64 |
0.76 |
0.94 |
0.94 |
0.81 |
0.79 |
0.97 |
chr18 | 14162672 | 14168081 | chr18:14162672-14168081:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.84 |
0.9 |
0.76 |
0.89 |
0.58 |
0.32 |
0.69 |
0.79 |
0.57 |
0.68 |
0.81 |
chr18 | 14988441 | 14988956 | chr18:14988441-14988956:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
— | 0.72 |
0.21 |
0.92 |
0.49 |
0.48 |
0.46 |
— | — | 0.64 |
0.6 |
chr18 | 15229094 | 15235249 | chr18:15229094-15235249:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.37 |
0.42 |
0.13 |
0.8 |
0.49 |
0.04 |
0.59 |
0.78 |
0.17 |
0.58 |
0.57 |
chr18 | 21882938 | 21889079 | chr18:21882938-21889079:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.96 |
0.9 |
0.77 |
0.86 |
0.69 |
0.68 |
0.71 |
0.92 |
0.92 |
0.75 |
0.97 |
chr18 | 22529636 | 22535670 | chr18:22529636-22535670:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.33 |
0.96 |
0.98 |
0.93 |
0.14 |
0.92 |
0.85 |
0.94 |
0.94 |
0.93 |
0.95 |
0.96 |
chr18 | 22748310 | 22749834 | chr18:22748310-22749834:+:L1P3:REF | L1P3 | REF | 3prime-truncated | LOC101927571 | 0.01 |
0.94 |
0.96 |
0.94 |
0.92 |
0.82 |
0.6 |
0.89 |
0.97 |
0.92 |
0.89 |
0.98 |
chr18 | 22885395 | 22891520 | chr18:22885395-22891520:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.78 |
0.95 |
0.95 |
0.93 |
0.91 |
0.83 |
0.96 |
0.95 |
0.94 |
0.91 |
0.94 |
chr18 | 24619042 | 24625072 | chr18:24619042-24625072:-:L1PA2:REF | L1PA2 | REF | full-length | LINC01915 | 0.03 |
0.91 |
0.95 |
0.75 |
0.2 |
0.92 |
0.66 |
0.96 |
0.92 |
0.87 |
0.97 |
0.87 |
chr18 | 25266452 | 25272922 | chr18:25266452-25272922:+:L1PA7:REF | L1PA7 | REF | full-length | ZNF521 | 0.12 |
— | — | 0.55 |
— | — | 0.56 |
— | — | — | 0.6 |
0.54 |
chr18 | 27279551 | 27285578 | chr18:27279551-27285578:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.52 |
0.9 |
0.55 |
0.91 |
0.72 |
0.56 |
0.73 |
0.97 |
0.92 |
0.72 |
0.95 |