Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 63530723 | 63536624 | chr2:63530723-63536624:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | WDPCP | 0.14 |
0.61 |
0.67 |
0.25 |
0.72 |
0.65 |
0.62 |
0.63 |
0.64 |
0.64 |
0.8 |
0.78 |
chr2 | 63619721 | 63621877 | chr2:63619721-63621877:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
— | — | 0.44 |
0.3 |
— | 0.54 |
— | — | 0.86 |
0.14 |
1.0 |
chr2 | 65924170 | 65930343 | chr2:65924170-65930343:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.3 |
0.85 |
0.97 |
0.18 |
0.89 |
0.76 |
0.45 |
0.84 |
0.96 |
0.93 |
0.8 |
0.82 |
chr2 | 66138949 | 66144939 | chr2:66138949-66144939:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.88 |
0.93 |
0.4 |
0.89 |
0.73 |
0.35 |
0.79 |
0.97 |
0.93 |
0.7 |
0.54 |
chr2 | 66206329 | 66212369 | chr2:66206329-66212369:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.76 |
0.94 |
0.69 |
0.94 |
0.82 |
0.83 |
0.89 |
0.95 |
0.93 |
0.85 |
0.86 |
chr2 | 66391130 | 66397150 | chr2:66391130-66397150:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01873 | 0.02 |
0.13 |
0.92 |
0.17 |
0.17 |
0.84 |
0.16 |
0.83 |
0.85 |
0.02 |
0.87 |
0.83 |
chr2 | 66627088 | 66633235 | chr2:66627088-66633235:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01798 | 0.08 |
0.9 |
0.95 |
0.69 |
0.9 |
0.87 |
0.75 |
0.97 |
0.97 |
0.94 |
0.96 |
0.71 |
chr2 | 66642648 | 66648743 | chr2:66642648-66648743:-:L1PA4:REF | L1PA4 | REF | full-length | LINC01798 | 0.01 |
0.58 |
0.65 |
0.26 |
0.62 |
0.73 |
0.15 |
0.93 |
0.75 |
0.7 |
0.72 |
0.2 |
chr2 | 67654064 | 67656506 | chr2:67654064-67656506:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.94 |
0.98 |
0.91 |
0.9 |
0.95 |
0.56 |
0.97 |
0.94 |
0.93 |
0.97 |
0.6 |
chr2 | 68404900 | 68411339 | chr2:68404900-68411339:+:L1PA7:REF | L1PA7 | REF | full-length | PLEK | 0.12 |
0.71 |
0.81 |
0.18 |
0.8 |
0.48 |
0.54 |
0.67 |
0.93 |
0.69 |
0.56 |
0.77 |
chr2 | 68677861 | 68680074 | chr2:68677861-68680074:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.1 |
0.91 |
0.94 |
0.64 |
0.15 |
0.76 |
0.8 |
0.89 |
0.88 |
0.84 |
0.81 |
0.85 |
chr2 | 71245812 | 71251556 | chr2:71245812-71251556:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.96 |
0.92 |
0.13 |
0.79 |
0.43 |
0.15 |
0.49 |
0.84 |
0.84 |
0.45 |
0.92 |
chr2 | 71411474 | 71417501 | chr2:71411474-71417501:-:L1HS:REF | L1HS | REF | full-length | ZNF638 | 0.34 |
0.01 |
0.01 |
0.38 |
0.03 |
0.76 |
0.82 |
0.5 |
0.08 |
0.01 |
0.15 |
0.99 |
chr2 | 71978243 | 71978637 | chr2:71978243-71978637:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
— | 0.66 |
— | — | 0.72 |
0.48 |
— | — | 0.32 |
0.7 |
— |
chr2 | 72015949 | 72021960 | chr2:72015949-72021960:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.86 |
0.87 |
0.92 |
0.82 |
0.77 |
0.87 |
0.89 |
0.84 |
0.92 |
chr2 | 72063975 | 72069997 | chr2:72063975-72069997:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.12 |
0.56 |
0.91 |
0.89 |
0.65 |
0.86 |
0.88 |
0.83 |
0.96 |
0.8 |
0.83 |
0.97 |
chr2 | 72297500 | 72300986 | chr2:72297500-72300986:-:L1P2:REF | L1P2 | REF | 3prime-truncated | EXOC6B | 0.02 |
— | — | — | — | — | 0.87 |
— | — | 0.49 |
0.88 |
— |
chr2 | 72403730 | 72409869 | chr2:72403730-72409869:+:L1PA4:REF | L1PA4 | REF | full-length | EXOC6B | 0.08 |
0.98 |
0.94 |
0.94 |
0.94 |
0.97 |
0.98 |
0.98 |
0.97 |
0.94 |
0.98 |
0.97 |
chr2 | 73460454 | 73466651 | chr2:73460454-73466651:+:L1PA4:REF | L1PA4 | REF | full-length | ALMS1 | 0.92 |
0.97 |
0.97 |
0.97 |
0.95 |
0.97 |
0.98 |
0.98 |
0.97 |
0.96 |
0.98 |
0.98 |
chr2 | 73480076 | 73486099 | chr2:73480076-73486099:-:L1PA2:REF | L1PA2 | REF | full-length | ALMS1 | 0.74 |
0.93 |
0.98 |
0.9 |
0.9 |
0.97 |
0.95 |
0.93 |
0.91 |
0.97 |
0.98 |
0.98 |
chr2 | 73645335 | 73648341 | chr2:73645335-73648341:-:L1P1:REF | L1P1 | REF | 3prime-truncated | ALMS1P1 | 0.02 |
0.84 |
0.91 |
0.88 |
0.73 |
0.87 |
0.84 |
0.78 |
0.86 |
0.86 |
0.84 |
0.8 |
chr2 | 73721395 | 73727535 | chr2:73721395-73727535:+:L1PA3:REF | L1PA3 | REF | full-length | TPRKB | 0.43 |
0.97 |
0.96 |
0.93 |
0.85 |
0.92 |
0.85 |
0.91 |
0.94 |
0.9 |
0.93 |
0.97 |
chr2 | 76090648 | 76096785 | chr2:76090648-76096785:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.53 |
0.33 |
0.46 |
0.85 |
0.79 |
0.44 |
0.39 |
0.59 |
0.93 |
0.29 |
0.47 |
0.63 |
chr2 | 76137225 | 76140186 | chr2:76137225-76140186:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.66 |
— | — | — | 0.88 |
0.46 |
0.56 |
— | — | — | 0.55 |
— |
chr2 | 76345152 | 76351328 | chr2:76345152-76351328:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.69 |
0.33 |
0.88 |
0.76 |
0.57 |
0.3 |
0.54 |
0.83 |
0.24 |
0.46 |
0.46 |
chr2 | 76647991 | 76654020 | chr2:76647991-76654020:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.65 |
0.45 |
0.43 |
0.77 |
0.55 |
0.42 |
0.56 |
0.71 |
0.5 |
0.56 |
0.71 |
chr2 | 76702092 | 76708115 | chr2:76702092-76708115:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.84 |
0.7 |
0.72 |
0.91 |
0.7 |
0.56 |
0.76 |
0.96 |
0.67 |
0.75 |
0.88 |
chr2 | 76722834 | 76729033 | chr2:76722834-76729033:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.69 |
0.52 |
0.43 |
0.92 |
0.64 |
0.38 |
0.62 |
0.81 |
0.52 |
0.66 |
0.78 |
chr2 | 76775758 | 76781758 | chr2:76775758-76781758:-:L1PA2:REF | L1PA2 | REF | full-length | LRRTM4 | 0.01 |
0.89 |
0.81 |
0.82 |
0.25 |
0.81 |
0.77 |
0.89 |
0.74 |
0.84 |
0.82 |
0.92 |
chr2 | 76795804 | 76801677 | chr2:76795804-76801677:+:L1PA2:REF | L1PA2 | REF | full-length | LRRTM4 | 0.02 |
0.72 |
0.78 |
0.71 |
0.81 |
0.75 |
0.84 |
0.86 |
0.82 |
0.75 |
0.82 |
0.83 |
chr2 | 77592831 | 77598845 | chr2:77592831-77598845:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.82 |
0.86 |
0.82 |
0.31 |
0.77 |
0.88 |
0.85 |
— | 0.02 |
0.85 |
— |
chr2 | 77753772 | 77759778 | chr2:77753772-77759778:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101927967 | 0.02 |
0.77 |
0.89 |
0.7 |
0.04 |
0.77 |
0.94 |
0.79 |
0.13 |
0.01 |
0.29 |
0.93 |
chr2 | 79282256 | 79288271 | chr2:79282256-79288271:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.52 |
0.64 |
0.52 |
0.88 |
0.72 |
0.59 |
0.77 |
0.88 |
0.51 |
0.57 |
— |
chr2 | 79465914 | 79470114 | chr2:79465914-79470114:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.1 |
0.09 |
0.86 |
0.39 |
0.14 |
0.4 |
0.86 |
0.03 |
0.42 |
0.5 |
chr2 | 80093001 | 80099154 | chr2:80093001-80099154:-:L1PA4:REF | L1PA4 | REF | full-length | CTNNA2 | 0.57 |
0.53 |
0.73 |
0.31 |
0.92 |
0.92 |
0.53 |
0.94 |
0.95 |
0.6 |
0.93 |
0.86 |
chr2 | 81870918 | 81870920 | chr2:81870918-81870920:+:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
0.83 |
0.76 |
0.86 |
— | 0.84 |
0.85 |
— | 0.95 |
0.58 |
— | 0.98 |
chr2 | 83088804 | 83094831 | chr2:83088804-83094831:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.88 |
0.95 |
0.83 |
0.14 |
0.88 |
0.8 |
0.94 |
0.86 |
0.49 |
0.96 |
0.98 |
chr2 | 83347474 | 83353489 | chr2:83347474-83353489:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.71 |
0.75 |
0.7 |
0.91 |
0.77 |
— | 0.79 |
0.97 |
0.51 |
0.71 |
0.98 |
chr2 | 83768302 | 83774332 | chr2:83768302-83774332:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.64 |
0.49 |
0.85 |
0.78 |
0.83 |
0.83 |
0.77 |
0.84 |
0.98 |
0.54 |
0.83 |
0.98 |
chr2 | 84103801 | 84104490 | chr2:84103801-84104490:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.06 |
0.31 |
0.64 |
0.11 |
0.81 |
0.77 |
0.62 |
0.82 |
0.85 |
0.45 |
0.75 |
0.04 |
chr2 | 84224738 | 84230910 | chr2:84224738-84230910:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.9 |
0.92 |
0.44 |
0.92 |
0.71 |
0.75 |
0.74 |
0.96 |
0.31 |
0.68 |
0.98 |
chr2 | 85963806 | 85969950 | chr2:85963806-85969950:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.65 |
0.67 |
0.89 |
0.17 |
0.89 |
0.88 |
0.49 |
0.86 |
0.9 |
0.69 |
0.88 |
0.23 |
chr2 | 86655238 | 86661268 | chr2:86655238-86661268:-:L1HS:REF | L1HS | REF | full-length | RNF103-CHMP3 | 0.54 |
0.97 |
0.95 |
0.95 |
0.92 |
0.89 |
0.97 |
0.89 |
0.97 |
0.82 |
0.9 |
0.97 |
chr2 | 88107541 | 88108083 | chr2:88107541-88108083:-:L1P1:REF | L1P1 | REF | 3prime-truncated | SMYD1 | 0.47 |
0.95 |
0.96 |
0.79 |
0.9 |
0.8 |
0.81 |
0.81 |
0.93 |
0.93 |
0.79 |
0.97 |
chr2 | 90350348 | 90356484 | chr2:90350348-90356484:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.51 |
0.49 |
0.33 |
0.5 |
0.48 |
0.42 |
0.47 |
0.54 |
0.38 |
0.45 |
0.46 |
chr2 | 91446947 | 91453083 | chr2:91446947-91453083:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.63 |
0.71 |
0.55 |
0.83 |
0.67 |
0.6 |
0.65 |
0.79 |
0.48 |
0.67 |
0.64 |
chr2 | 91921173 | 91927204 | chr2:91921173-91927204:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.19 |
0.6 |
0.38 |
0.39 |
0.56 |
0.43 |
0.6 |
0.8 |
0.22 |
0.64 |
0.72 |
chr2 | 95252086 | 95258210 | chr2:95252086-95258210:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.86 |
0.87 |
0.34 |
0.92 |
0.69 |
0.21 |
0.66 |
0.86 |
0.51 |
0.65 |
0.89 |
chr2 | 95869529 | 95875690 | chr2:95869529-95875690:+:L1PA3:REF | L1PA3 | REF | full-length | ANKRD36C | 0.82 |
0.8 |
0.91 |
0.96 |
0.86 |
0.99 |
0.83 |
1.0 |
— | 0.89 |
0.77 |
0.9 |
chr2 | 96378981 | 96385131 | chr2:96378981-96385131:+:L1PA3:REF | L1PA3 | REF | full-length | NCAPH | 0.82 |
0.97 |
0.93 |
0.97 |
0.88 |
0.94 |
0.88 |
0.97 |
0.97 |
0.87 |
0.97 |
0.98 |