Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 7411757 | 7417922 | chr1:7411757-7417922:-:L1PA4:REF | L1PA4 | REF | full-length | CAMTA1 | — | 0.5 |
0.85 |
— | 0.73 |
0.88 |
0.77 |
— | — | 0.79 |
0.93 |
0.81 |
chr1 | 12816749 | 12819764 | chr1:12816749-12819764:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LINC01784 | 0.06 |
0.7 |
0.14 |
0.02 |
0.81 |
0.25 |
0.02 |
0.16 |
0.5 |
0.08 |
0.17 |
0.11 |
chr1 | 14382318 | 14388341 | chr1:14382318-14388341:-:L1PA3:REF | L1PA3 | REF | full-length | KAZN-AS1 | 0.45 |
0.94 |
0.81 |
0.22 |
0.82 |
0.78 |
0.4 |
0.86 |
0.92 |
0.31 |
0.72 |
0.63 |
chr1 | 25506585 | 25512707 | chr1:25506585-25512707:+:L1PA2:REF | L1PA2 | REF | full-length | MACO1 | 0.85 |
0.2 |
0.97 |
0.64 |
0.36 |
0.87 |
0.17 |
0.8 |
0.67 |
0.9 |
0.85 |
0.94 |
chr1 | 29404321 | 29405002 | chr1:29404321-29405002:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.73 |
0.58 |
0.21 |
0.89 |
0.54 |
0.47 |
0.59 |
0.83 |
0.26 |
0.58 |
0.72 |
chr1 | 33829520 | 33835665 | chr1:33829520-33835665:+:L1PA3:REF | L1PA3 | REF | full-length | CSMD2 | 0.01 |
0.72 |
0.87 |
0.47 |
0.92 |
0.94 |
0.77 |
0.74 |
0.95 |
0.53 |
0.72 |
0.86 |
chr1 | 34092394 | 34098413 | chr1:34092394-34098413:+:L1PA2:REF | L1PA2 | REF | full-length | CSMD2 | 0.06 |
0.54 |
0.91 |
0.49 |
0.56 |
0.93 |
0.74 |
0.73 |
0.91 |
0.44 |
0.74 |
0.72 |
chr1 | 34250741 | 34256767 | chr1:34250741-34256767:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.79 |
0.86 |
0.57 |
0.23 |
0.57 |
0.8 |
0.43 |
0.74 |
0.47 |
0.55 |
0.77 |
chr1 | 34566055 | 34572105 | chr1:34566055-34572105:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.84 |
0.94 |
0.67 |
0.6 |
0.82 |
0.79 |
0.74 |
0.9 |
0.63 |
0.84 |
0.89 |
chr1 | 41176264 | 41182362 | chr1:41176264-41182362:+:L1PA4:REF | L1PA4 | REF | full-length | SCMH1 | 0.97 |
0.98 |
0.98 |
0.98 |
0.91 |
0.98 |
0.98 |
0.98 |
0.96 |
0.96 |
0.98 |
0.97 |
chr1 | 41552781 | 41555631 | chr1:41552781-41555631:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | HIVEP3 | 0.01 |
0.81 |
0.96 |
0.73 |
0.9 |
0.94 |
0.38 |
0.93 |
0.97 |
0.82 |
0.92 |
0.98 |
chr1 | 42234037 | 42235549 | chr1:42234037-42235549:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | FOXJ3 | 0.97 |
0.97 |
0.98 |
0.98 |
0.95 |
0.99 |
0.99 |
0.97 |
0.97 |
0.97 |
0.98 |
0.98 |
chr1 | 42501438 | 42502605 | chr1:42501438-42502605:-:L1P2:REF | L1P2 | REF | 3prime-truncated | CCDC30 | 0.03 |
0.95 |
0.93 |
0.54 |
0.87 |
0.85 |
0.42 |
0.78 |
0.9 |
0.79 |
0.78 |
0.95 |
chr1 | 43114527 | 43120516 | chr1:43114527-43120516:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.01 |
0.91 |
0.59 |
0.03 |
— | 0.01 |
0.77 |
0.76 |
0.01 |
0.89 |
0.97 |
chr1 | 46846137 | 46850891 | chr1:46846137-46850891:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | CYP4Z2P | 0.01 |
0.62 |
0.88 |
0.43 |
0.9 |
0.64 |
0.44 |
0.72 |
0.93 |
0.43 |
0.59 |
0.82 |
chr1 | 46962586 | 46965401 | chr1:46962586-46965401:-:L1P1:REF | L1P1 | REF | 3prime-truncated | CYP4X1 | 0.01 |
0.87 |
0.68 |
0.29 |
0.91 |
0.51 |
0.55 |
0.64 |
0.84 |
0.38 |
0.55 |
0.5 |
chr1 | 47006446 | 47012568 | chr1:47006446-47012568:+:L1PA5:REF | L1PA5 | REF | full-length | CYP4X1 | 0.02 |
0.92 |
0.75 |
0.4 |
0.89 |
0.54 |
0.52 |
0.48 |
0.81 |
0.56 |
0.47 |
0.53 |
chr1 | 48150125 | 48156157 | chr1:48150125-48156157:+:L1PA2:REF | L1PA2 | REF | full-length | SKINT1L | 0.02 |
0.92 |
0.94 |
0.83 |
0.14 |
0.79 |
0.83 |
0.84 |
0.9 |
0.48 |
0.82 |
0.88 |
chr1 | 48167952 | 48173676 | chr1:48167952-48173676:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SKINT1L | 0.0 |
0.36 |
0.72 |
0.24 |
0.87 |
0.35 |
0.13 |
0.5 |
0.89 |
0.15 |
0.44 |
0.5 |
chr1 | 48277194 | 48283343 | chr1:48277194-48283343:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.86 |
0.85 |
0.55 |
0.89 |
0.77 |
0.91 |
0.8 |
0.91 |
0.47 |
0.85 |
0.94 |
chr1 | 48363803 | 48369929 | chr1:48363803-48369929:-:L1PA3:REF | L1PA3 | REF | full-length | SPATA6 | 0.02 |
0.78 |
0.92 |
0.5 |
0.92 |
0.91 |
0.76 |
0.91 |
0.96 |
0.75 |
0.95 |
0.97 |
chr1 | 49006012 | 49012044 | chr1:49006012-49012044:+:L1PA3:REF | L1PA3 | REF | full-length | AGBL4 | 0.02 |
0.39 |
0.9 |
0.82 |
0.2 |
0.84 |
0.73 |
0.83 |
0.88 |
0.5 |
0.7 |
0.78 |
chr1 | 49068236 | 49074523 | chr1:49068236-49074523:-:L1PA6:REF | L1PA6 | REF | full-length | AGBL4 | 0.01 |
0.49 |
0.42 |
0.04 |
0.86 |
0.57 |
0.02 |
0.38 |
0.67 |
0.26 |
0.31 |
0.18 |
chr1 | 49158376 | 49161513 | chr1:49158376-49161513:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | AGBL4 | 0.0 |
0.04 |
0.12 |
0.02 |
0.79 |
0.38 |
0.06 |
0.07 |
0.24 |
0.03 |
0.11 |
0.07 |
chr1 | 49282507 | 49288376 | chr1:49282507-49288376:+:L1PA2:REF | L1PA2 | REF | full-length | AGBL4 | 0.01 |
0.82 |
0.84 |
0.65 |
0.91 |
0.78 |
0.7 |
0.81 |
0.9 |
0.67 |
0.77 |
0.89 |
chr1 | 49561313 | 49567447 | chr1:49561313-49567447:-:L1PA4:REF | L1PA4 | REF | full-length | AGBL4 | 0.01 |
0.24 |
0.45 |
0.23 |
0.85 |
0.56 |
0.15 |
0.63 |
0.78 |
0.14 |
0.62 |
0.46 |
chr1 | 49915108 | 49921256 | chr1:49915108-49921256:+:L1PA5:REF | L1PA5 | REF | full-length | AGBL4 | 0.01 |
0.14 |
0.29 |
0.09 |
0.74 |
0.33 |
0.03 |
0.32 |
0.54 |
0.11 |
0.38 |
0.22 |
chr1 | 49934841 | 49940864 | chr1:49934841-49940864:+:L1PA3:REF | L1PA3 | REF | full-length | AGBL4 | 0.01 |
0.45 |
0.66 |
0.49 |
0.74 |
0.67 |
0.42 |
0.71 |
0.85 |
0.32 |
0.69 |
0.79 |
chr1 | 52171000 | 52177141 | chr1:52171000-52177141:-:L1PA3:REF | L1PA3 | REF | full-length | ZFYVE9 | 0.87 |
0.44 |
0.98 |
0.53 |
0.94 |
0.93 |
0.85 |
0.91 |
1.0 |
0.92 |
0.97 |
0.95 |
chr1 | 55430256 | 55436824 | chr1:55430256-55436824:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.35 |
0.94 |
0.97 |
0.85 |
0.85 |
0.99 |
0.98 |
1.0 |
0.89 |
0.85 |
0.88 |
0.91 |
chr1 | 55561830 | 55567969 | chr1:55561830-55567969:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.77 |
0.79 |
0.85 |
0.87 |
0.94 |
0.64 |
0.9 |
0.87 |
0.69 |
0.94 |
0.94 |
chr1 | 56089638 | 56092245 | chr1:56089638-56092245:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.03 |
0.89 |
0.96 |
0.88 |
0.28 |
0.98 |
0.88 |
0.97 |
0.97 |
0.93 |
0.97 |
0.98 |
chr1 | 58126455 | 58132485 | chr1:58126455-58132485:-:L1PA2:REF | L1PA2 | REF | full-length | DAB1 | 0.08 |
0.76 |
0.84 |
0.66 |
0.45 |
0.83 |
0.62 |
0.76 |
0.94 |
0.78 |
0.78 |
0.85 |
chr1 | 58373171 | 58379206 | chr1:58373171-58379206:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.16 |
0.93 |
0.93 |
0.78 |
0.16 |
0.91 |
0.93 |
0.87 |
0.89 |
0.89 |
0.95 |
0.89 |
chr1 | 58958128 | 58964283 | chr1:58958128-58964283:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.69 |
0.63 |
0.92 |
0.72 |
0.83 |
0.92 |
0.84 |
0.94 |
0.96 |
0.94 |
0.89 |
0.89 |
chr1 | 59250823 | 59256962 | chr1:59250823-59256962:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.96 |
0.94 |
0.72 |
0.79 |
0.9 |
0.51 |
0.88 |
0.94 |
0.91 |
0.81 |
0.98 |
chr1 | 59368923 | 59375078 | chr1:59368923-59375078:+:L1PA3:REF | L1PA3 | REF | full-length | FGGY | 0.57 |
0.94 |
0.96 |
0.94 |
0.93 |
0.91 |
0.97 |
0.92 |
0.97 |
0.96 |
0.98 |
0.98 |
chr1 | 59532995 | 59539008 | chr1:59532995-59539008:+:L1PA3:REF | L1PA3 | REF | full-length | FGGY | 0.37 |
0.97 |
0.96 |
0.83 |
0.31 |
0.95 |
0.98 |
0.97 |
0.93 |
0.84 |
0.96 |
0.98 |
chr1 | 59586803 | 59592948 | chr1:59586803-59592948:+:L1PA3:REF | L1PA3 | REF | full-length | FGGY | 0.1 |
0.86 |
0.87 |
0.76 |
0.84 |
0.85 |
0.83 |
0.88 |
0.96 |
0.73 |
0.92 |
0.86 |
chr1 | 59647747 | 59653779 | chr1:59647747-59653779:-:L1PA2:REF | L1PA2 | REF | full-length | FGGY | 0.15 |
0.95 |
0.97 |
0.81 |
0.17 |
0.96 |
0.98 |
0.97 |
0.97 |
0.72 |
0.96 |
0.98 |
chr1 | 60490132 | 60496149 | chr1:60490132-60496149:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.52 |
0.84 |
0.63 |
0.05 |
0.86 |
0.71 |
0.82 |
0.8 |
0.24 |
0.76 |
0.95 |
chr1 | 60640012 | 60646037 | chr1:60640012-60646037:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.5 |
0.95 |
0.85 |
0.02 |
0.87 |
0.92 |
0.87 |
0.95 |
0.83 |
0.86 |
0.95 |
chr1 | 65450279 | 65456309 | chr1:65450279-65456309:-:L1PA3:REF | L1PA3 | REF | full-length | LEPR | 0.96 |
0.96 |
0.96 |
0.89 |
0.62 |
0.97 |
0.9 |
0.92 |
0.95 |
0.92 |
0.95 |
0.97 |
chr1 | 65462002 | 65468172 | chr1:65462002-65468172:-:L1PA6:REF | L1PA6 | REF | full-length | LEPR | 0.76 |
0.69 |
0.95 |
0.88 |
0.9 |
0.97 |
0.53 |
0.95 |
0.9 |
0.87 |
0.97 |
0.97 |
chr1 | 65544806 | 65550970 | chr1:65544806-65550970:-:L1PA3:REF | L1PA3 | REF | full-length | LEPR | 0.86 |
0.75 |
0.87 |
0.78 |
0.29 |
0.75 |
0.87 |
0.79 |
0.48 |
0.85 |
0.8 |
0.88 |
chr1 | 65558564 | 65564576 | chr1:65558564-65564576:-:L1PA2:REF | L1PA2 | REF | full-length | LEPR | 0.97 |
0.93 |
0.91 |
0.75 |
0.11 |
0.94 |
0.85 |
0.87 |
0.77 |
0.31 |
0.91 |
0.99 |
chr1 | 66199807 | 66204996 | chr1:66199807-66204996:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | PDE4B | 0.0 |
0.46 |
0.95 |
0.97 |
0.88 |
0.8 |
0.7 |
0.91 |
0.96 |
0.84 |
0.72 |
0.96 |
chr1 | 66480923 | 66486952 | chr1:66480923-66486952:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.74 |
0.87 |
0.93 |
0.25 |
0.87 |
0.89 |
0.93 |
0.9 |
0.12 |
0.98 |
0.89 |
chr1 | 66780142 | 66786326 | chr1:66780142-66786326:+:L1PA4:REF | L1PA4 | REF | full-length | TCTEX1D1 | 0.07 |
0.62 |
0.94 |
0.47 |
0.88 |
0.81 |
0.51 |
0.77 |
0.96 |
0.95 |
0.92 |
0.97 |
chr1 | 67078891 | 67084915 | chr1:67078891-67084915:-:L1HS:REF | L1HS | REF | full-length | C1orf141 | 0.85 |
0.94 |
0.95 |
0.86 |
0.28 |
0.9 |
0.92 |
0.95 |
0.98 |
0.87 |
0.97 |
0.97 |