Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 169248623 | 169254656 | chr2:169248623-169254656:+:L1HS:REF | L1HS | REF | full-length | LRP2 | 0.36 |
0.87 |
0.97 |
0.82 |
0.12 |
0.76 |
0.82 |
0.78 |
0.85 |
0.93 |
0.84 |
0.98 |
chr2 | 169452781 | 169458934 | chr2:169452781-169458934:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.72 |
0.34 |
0.88 |
0.86 |
0.78 |
0.79 |
0.73 |
0.89 |
0.97 |
0.9 |
0.88 |
0.82 |
chr2 | 171641285 | 171647419 | chr2:171641285-171647419:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.1 |
0.89 |
0.86 |
0.76 |
0.87 |
0.8 |
0.58 |
0.84 |
0.95 |
0.84 |
0.79 |
0.95 |
chr2 | 172187264 | 172193414 | chr2:172187264-172193414:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.82 |
0.62 |
— | 0.88 |
0.79 |
0.66 |
0.83 |
— | 0.6 |
0.87 |
0.92 |
chr2 | 172315270 | 172321297 | chr2:172315270-172321297:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.96 |
0.96 |
0.86 |
0.22 |
0.96 |
0.92 |
0.98 |
0.95 |
0.89 |
0.92 |
0.97 |
chr2 | 173527289 | 173533317 | chr2:173527289-173533317:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.02 |
0.96 |
0.34 |
0.11 |
0.89 |
0.8 |
0.89 |
0.87 |
0.06 |
0.89 |
0.03 |
chr2 | 173699375 | 173705410 | chr2:173699375-173705410:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.98 |
0.97 |
0.91 |
0.17 |
0.91 |
0.86 |
0.93 |
0.95 |
0.98 |
0.94 |
0.98 |
chr2 | 174404458 | 174410482 | chr2:174404458-174410482:-:L1PA2:REF | L1PA2 | REF | full-length | SCRN3 | 0.87 |
0.98 |
0.02 |
0.49 |
0.1 |
0.9 |
0.99 |
0.88 |
0.42 |
0.01 |
0.67 |
0.98 |
chr2 | 175481951 | 175487994 | chr2:175481951-175487994:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.68 |
0.94 |
0.76 |
0.13 |
0.82 |
0.8 |
0.86 |
— | 0.88 |
0.85 |
0.97 |
chr2 | 175588546 | 175594563 | chr2:175588546-175594563:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.96 |
0.94 |
0.89 |
0.07 |
0.9 |
0.31 |
0.78 |
— | 0.0 |
0.79 |
0.98 |
chr2 | 175703157 | 175704878 | chr2:175703157-175704878:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.1 |
0.67 |
0.96 |
0.75 |
0.4 |
0.86 |
0.93 |
0.86 |
0.96 |
0.97 |
0.85 |
0.98 |
chr2 | 175759595 | 175765629 | chr2:175759595-175765629:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.68 |
0.7 |
0.39 |
0.79 |
0.55 |
0.62 |
0.56 |
0.58 |
0.7 |
0.75 |
0.69 |
chr2 | 175912136 | 175914757 | chr2:175912136-175914757:-:L1P3:REF | L1P3 | REF | 3prime-truncated | LNPK | 0.33 |
0.94 |
0.97 |
0.63 |
0.91 |
0.95 |
0.94 |
0.88 |
0.94 |
0.96 |
0.93 |
0.97 |
chr2 | 176305923 | 176312032 | chr2:176305923-176312032:-:L1PA6:REF | L1PA6 | REF | full-length | MTX2 | 0.98 |
0.97 |
— | 0.98 |
0.94 |
0.99 |
0.98 |
0.95 |
0.96 |
— | 0.98 |
0.99 |
chr2 | 177973073 | 177979090 | chr2:177973073-177979090:+:L1HS:REF | L1HS | REF | full-length | PDE11A | 0.11 |
0.94 |
0.96 |
0.8 |
0.08 |
0.85 |
0.97 |
0.85 |
0.7 |
0.94 |
0.92 |
0.98 |
chr2 | 178049371 | 178055510 | chr2:178049371-178055510:+:L1PA5:REF | L1PA5 | REF | full-length | PDE11A | 0.04 |
0.9 |
0.94 |
0.12 |
0.9 |
0.56 |
0.7 |
0.59 |
— | 0.88 |
0.67 |
0.94 |
chr2 | 178982451 | 178988482 | chr2:178982451-178988482:+:L1PA3:REF | L1PA3 | REF | full-length | CCDC141 | 0.02 |
0.83 |
0.93 |
0.74 |
0.61 |
0.77 |
0.72 |
0.76 |
0.94 |
0.88 |
0.82 |
0.97 |
chr2 | 179087387 | 179093560 | chr2:179087387-179093560:-:L1PA4:REF | L1PA4 | REF | full-length | SESTD1 | 0.01 |
0.83 |
0.78 |
0.73 |
0.92 |
0.72 |
0.51 |
0.85 |
0.94 |
0.7 |
0.81 |
0.97 |
chr2 | 179195944 | 179201918 | chr2:179195944-179201918:+:L1PA3:REF | L1PA3 | REF | full-length | SESTD1 | 0.01 |
0.92 |
0.97 |
0.97 |
0.87 |
0.93 |
0.98 |
0.94 |
0.93 |
0.96 |
0.93 |
0.93 |
chr2 | 180833661 | 180839689 | chr2:180833661-180839689:-:L1HS:REF | L1HS | REF | full-length | SCHLAP1 | 0.03 |
0.95 |
0.98 |
0.93 |
0.11 |
0.94 |
0.76 |
0.95 |
0.81 |
0.96 |
0.98 |
0.98 |
chr2 | 181731649 | 181737829 | chr2:181731649-181737829:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.99 |
0.82 |
0.93 |
0.85 |
0.78 |
0.59 |
0.83 |
0.88 |
0.79 |
0.72 |
0.97 |
chr2 | 182025225 | 182031239 | chr2:182025225-182031239:-:L1PA2:REF | L1PA2 | REF | full-length | PPP1R1C | 0.06 |
0.96 |
0.95 |
0.97 |
0.1 |
0.88 |
0.84 |
0.95 |
0.58 |
0.93 |
0.95 |
0.98 |
chr2 | 182212404 | 182218434 | chr2:182212404-182218434:+:L1PA3:REF | L1PA3 | REF | full-length | PDE1A | 0.07 |
0.97 |
0.97 |
0.9 |
0.93 |
0.94 |
0.89 |
0.96 |
0.97 |
0.95 |
0.97 |
0.97 |
chr2 | 183448314 | 183454476 | chr2:183448314-183454476:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.72 |
0.76 |
0.12 |
0.85 |
0.51 |
0.4 |
0.6 |
0.92 |
0.28 |
0.55 |
0.97 |
chr2 | 183586195 | 183592337 | chr2:183586195-183592337:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.88 |
0.73 |
0.51 |
0.89 |
0.66 |
0.53 |
0.76 |
0.98 |
0.41 |
0.68 |
0.98 |
chr2 | 185419434 | 185425462 | chr2:185419434-185425462:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.86 |
0.89 |
0.94 |
0.05 |
0.74 |
0.81 |
0.72 |
0.09 |
0.43 |
0.46 |
0.92 |
chr2 | 185585887 | 185591908 | chr2:185585887-185591908:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.83 |
0.64 |
0.78 |
0.14 |
0.71 |
0.42 |
0.68 |
0.94 |
0.52 |
0.79 |
0.96 |
chr2 | 185841720 | 185847756 | chr2:185841720-185847756:-:L1PA2:REF | L1PA2 | REF | full-length | FSIP2 | 0.16 |
0.78 |
0.65 |
0.91 |
0.75 |
0.72 |
0.79 |
0.66 |
0.85 |
0.81 |
0.75 |
0.78 |
chr2 | 185864597 | 185870656 | chr2:185864597-185870656:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.84 |
0.79 |
0.88 |
0.11 |
0.79 |
0.87 |
0.89 |
0.86 |
0.01 |
0.86 |
0.9 |
chr2 | 188123561 | 188129537 | chr2:188123561-188129537:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01090 | 0.02 |
0.3 |
0.89 |
0.81 |
0.16 |
0.55 |
0.05 |
0.52 |
0.22 |
0.12 |
0.47 |
0.07 |
chr2 | 189891522 | 189893682 | chr2:189891522-189893682:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.36 |
0.94 |
0.97 |
0.79 |
0.94 |
0.9 |
0.61 |
0.95 |
0.97 |
0.94 |
0.94 |
0.97 |
chr2 | 190772250 | 190778401 | chr2:190772250-190778401:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.65 |
0.96 |
0.93 |
0.97 |
0.92 |
0.89 |
0.95 |
0.9 |
0.95 |
0.86 |
0.93 |
0.97 |
chr2 | 191160584 | 191164944 | chr2:191160584-191164944:+:L1P2:REF | L1P2 | REF | 3prime-truncated | STAT4 | 0.01 |
0.81 |
0.9 |
0.73 |
0.93 |
0.95 |
0.38 |
0.92 |
0.94 |
0.89 |
0.91 |
0.88 |
chr2 | 191761849 | 191767876 | chr2:191761849-191767876:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.88 |
0.88 |
0.91 |
— | 0.4 |
0.87 |
0.82 |
— | 0.86 |
0.89 |
0.89 |
0.91 |
chr2 | 192268435 | 192274450 | chr2:192268435-192274450:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.9 |
0.9 |
— | — | — | 0.78 |
— | — | 0.89 |
0.95 |
0.98 |
chr2 | 193170704 | 193171720 | chr2:193170704-193171720:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.98 |
0.9 |
0.98 |
0.05 |
0.84 |
0.92 |
0.83 |
0.06 |
0.66 |
0.88 |
0.98 |
chr2 | 193212420 | 193218448 | chr2:193212420-193218448:-:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.94 |
0.89 |
0.93 |
0.13 |
0.84 |
0.86 |
0.84 |
0.95 |
0.93 |
0.86 |
0.98 |
chr2 | 193903874 | 193905536 | chr2:193903874-193905536:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.4 |
0.41 |
0.36 |
0.36 |
0.28 |
0.43 |
0.45 |
0.39 |
0.44 |
0.47 |
chr2 | 195067521 | 195073543 | chr2:195067521-195073543:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.79 |
0.67 |
0.83 |
0.18 |
0.74 |
0.72 |
0.7 |
0.88 |
0.82 |
0.77 |
0.98 |
chr2 | 195228435 | 195234459 | chr2:195228435-195234459:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.74 |
0.78 |
0.74 |
0.28 |
0.74 |
0.67 |
0.72 |
— | 0.77 |
0.8 |
0.9 |
chr2 | 195373191 | 195379241 | chr2:195373191-195379241:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.85 |
0.9 |
0.88 |
0.9 |
0.2 |
0.87 |
0.81 |
0.93 |
0.9 |
0.88 |
0.89 |
0.97 |
chr2 | 195523002 | 195529095 | chr2:195523002-195529095:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.9 |
0.56 |
0.92 |
0.95 |
0.75 |
0.94 |
0.5 |
0.9 |
0.95 |
0.81 |
0.98 |
0.98 |
chr2 | 195743883 | 195749992 | chr2:195743883-195749992:+:L1PA3:REF | L1PA3 | REF | full-length | DNAH7 | 0.96 |
0.61 |
0.97 |
0.98 |
0.92 |
0.97 |
0.88 |
0.99 |
0.96 |
0.96 |
0.99 |
0.99 |
chr2 | 196521488 | 196527500 | chr2:196521488-196527500:-:L1PA2:REF | L1PA2 | REF | full-length | HECW2 | 0.11 |
0.02 |
0.94 |
0.98 |
0.11 |
0.93 |
0.77 |
0.92 |
0.87 |
0.87 |
0.93 |
0.97 |
chr2 | 196905587 | 196911636 | chr2:196905587-196911636:+:L1HS:REF | L1HS | REF | full-length | PGAP1 | 0.49 |
0.91 |
0.13 |
0.97 |
0.11 |
0.94 |
0.97 |
0.92 |
0.46 |
0.06 |
0.97 |
0.97 |
chr2 | 197634735 | 197640761 | chr2:197634735-197640761:-:L1PA2:REF | L1PA2 | REF | full-length | RFTN2 | 0.56 |
0.91 |
0.97 |
0.91 |
0.06 |
0.93 |
0.91 |
0.97 |
0.98 |
0.02 |
0.98 |
0.94 |
chr2 | 197687546 | 197693561 | chr2:197687546-197693561:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.43 |
0.94 |
0.93 |
0.0 |
0.1 |
0.86 |
0.85 |
0.94 |
0.89 |
0.04 |
0.94 |
0.96 |
chr2 | 198017928 | 198024409 | chr2:198017928-198024409:+:L1PA7:REF | L1PA7 | REF | full-length | PLCL1 | — | 0.47 |
0.43 |
— | 0.89 |
0.43 |
0.02 |
0.6 |
0.89 |
0.6 |
0.38 |
0.12 |
chr2 | 198196260 | 198202415 | chr2:198196260-198202415:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.23 |
0.66 |
0.93 |
0.5 |
0.89 |
0.78 |
0.18 |
0.69 |
0.92 |
0.91 |
0.81 |
0.85 |
chr2 | 198915189 | 198915191 | chr2:198915189-198915191:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.49 |
— | — | — | 0.89 |
— | — | — | — | — | 0.98 |