Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 65220271 | 65220867 | chr3:65220271-65220867:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.73 |
0.8 |
0.14 |
0.94 |
0.75 |
0.21 |
0.77 |
— | 0.69 |
0.76 |
0.62 |
chr3 | 65509292 | 65515316 | chr3:65509292-65515316:+:L1PA2:REF | L1PA2 | REF | full-length | MAGI1 | 0.11 |
0.28 |
0.94 |
0.8 |
0.09 |
0.92 |
0.98 |
0.83 |
0.7 |
0.43 |
0.87 |
0.99 |
chr3 | 66842801 | 66848943 | chr3:66842801-66848943:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.91 |
0.9 |
0.48 |
0.91 |
0.82 |
0.84 |
0.95 |
0.95 |
0.88 |
0.89 |
0.91 |
chr3 | 67147643 | 67153797 | chr3:67147643-67153797:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
— | 0.27 |
0.78 |
— | 0.81 |
— | — | 0.26 |
0.77 |
0.54 |
chr3 | 67393029 | 67399181 | chr3:67393029-67399181:+:L1PA3:REF | L1PA3 | REF | full-length | SUCLG2 | 0.88 |
0.99 |
0.9 |
0.94 |
0.95 |
0.99 |
0.98 |
0.91 |
0.99 |
0.95 |
0.98 |
0.92 |
chr3 | 67726858 | 67727223 | chr3:67726858-67727223:-:L1P1:REF | L1P1 | REF | 3prime-truncated | SUCLG2-AS1 | 0.0 |
0.79 |
0.68 |
0.1 |
0.84 |
0.71 |
0.84 |
0.69 |
0.85 |
0.53 |
0.73 |
0.95 |
chr3 | 67764184 | 67764923 | chr3:67764184-67764923:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SUCLG2-AS1 | 0.0 |
0.61 |
0.79 |
0.09 |
0.9 |
0.77 |
0.91 |
0.65 |
0.94 |
0.46 |
0.83 |
0.86 |
chr3 | 67775624 | 67782079 | chr3:67775624-67782079:-:L1PA7:REF | L1PA7 | REF | full-length | SUCLG2-AS1 | 0.08 |
0.96 |
0.75 |
0.38 |
0.85 |
0.13 |
0.92 |
0.29 |
0.95 |
0.69 |
0.38 |
0.93 |
chr3 | 67947816 | 67953946 | chr3:67947816-67953946:+:L1PA6:REF | L1PA6 | REF | full-length | SUCLG2-AS1 | 0.0 |
0.05 |
0.42 |
0.18 |
0.5 |
0.44 |
0.03 |
0.31 |
0.73 |
0.11 |
0.33 |
0.23 |
chr3 | 68076319 | 68082339 | chr3:68076319-68082339:-:L1PA3:REF | L1PA3 | REF | full-length | TAFA1 | 0.03 |
0.75 |
0.79 |
0.55 |
0.81 |
0.81 |
0.72 |
0.81 |
0.97 |
0.49 |
0.76 |
0.85 |
chr3 | 68684388 | 68686911 | chr3:68684388-68686911:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.68 |
0.57 |
0.15 |
0.84 |
0.67 |
0.32 |
0.54 |
0.88 |
0.07 |
0.53 |
0.35 |
chr3 | 69475205 | 69481363 | chr3:69475205-69481363:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.93 |
0.81 |
0.67 |
0.74 |
0.73 |
0.64 |
0.77 |
0.95 |
0.82 |
0.72 |
0.76 |
chr3 | 70285056 | 70291083 | chr3:70285056-70291083:-:L1PA3:REF | L1PA3 | REF | full-length | MDFIC2 | 0.01 |
0.87 |
0.96 |
0.78 |
0.05 |
0.81 |
0.78 |
0.87 |
0.78 |
0.19 |
0.85 |
0.84 |
chr3 | 70675668 | 70681798 | chr3:70675668-70681798:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.92 |
0.95 |
0.54 |
0.89 |
0.8 |
0.69 |
0.9 |
0.98 |
0.79 |
0.9 |
0.56 |
chr3 | 72710341 | 72716487 | chr3:72710341-72716487:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.49 |
0.96 |
0.93 |
0.68 |
0.88 |
0.88 |
0.95 |
0.92 |
0.97 |
0.94 |
0.88 |
0.98 |
chr3 | 73990712 | 73996834 | chr3:73990712-73996834:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.15 |
0.78 |
0.64 |
0.91 |
0.85 |
0.86 |
0.89 |
0.98 |
0.63 |
0.84 |
0.9 |
chr3 | 74156962 | 74163113 | chr3:74156962-74163113:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.2 |
0.49 |
0.12 |
0.88 |
0.62 |
0.23 |
0.76 |
0.93 |
0.05 |
0.63 |
0.53 |
chr3 | 74794138 | 74800348 | chr3:74794138-74800348:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.04 |
0.0 |
0.03 |
0.0 |
0.67 |
0.13 |
0.01 |
0.09 |
0.84 |
0.01 |
0.09 |
0.51 |
chr3 | 75091959 | 75098014 | chr3:75091959-75098014:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.77 |
0.74 |
0.37 |
0.14 |
0.71 |
0.71 |
0.77 |
0.81 |
0.32 |
0.72 |
0.74 |
chr3 | 75119849 | 75125881 | chr3:75119849-75125881:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.59 |
0.73 |
0.7 |
0.68 |
0.74 |
0.79 |
0.74 |
0.95 |
0.68 |
0.74 |
0.72 |
chr3 | 75273461 | 75279470 | chr3:75273461-75279470:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.62 |
0.8 |
0.57 |
0.91 |
0.92 |
0.64 |
0.87 |
0.96 |
0.52 |
0.76 |
0.69 |
chr3 | 75707464 | 75708765 | chr3:75707464-75708765:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.06 |
0.12 |
0.42 |
0.1 |
0.03 |
0.22 |
0.27 |
0.03 |
0.26 |
0.13 |
chr3 | 75831756 | 75837912 | chr3:75831756-75837912:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.17 |
0.32 |
0.06 |
0.87 |
0.56 |
0.17 |
0.65 |
0.94 |
0.51 |
0.62 |
0.9 |
chr3 | 77210593 | 77216723 | chr3:77210593-77216723:-:L1PA4:REF | L1PA4 | REF | full-length | ROBO2 | 0.82 |
0.45 |
0.82 |
0.12 |
0.93 |
0.68 |
0.48 |
0.73 |
0.98 |
0.96 |
0.84 |
0.97 |
chr3 | 77756444 | 77762685 | chr3:77756444-77762685:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.35 |
0.44 |
0.0 |
0.9 |
0.83 |
0.06 |
0.77 |
0.91 |
0.78 |
0.84 |
0.77 |
chr3 | 77763677 | 77769678 | chr3:77763677-77769678:-:L1HS:REF | L1HS | REF | full-length | — | 0.0 |
0.72 |
0.82 |
0.67 |
0.19 |
0.88 |
0.73 |
0.83 |
0.97 |
0.88 |
0.87 |
0.97 |
chr3 | 78487036 | 78493167 | chr3:78487036-78493167:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.51 |
0.6 |
0.67 |
0.86 |
0.57 |
0.45 |
0.71 |
0.86 |
0.78 |
0.78 |
0.89 |
chr3 | 78675184 | 78681346 | chr3:78675184-78681346:+:L1PA3:REF | L1PA3 | REF | full-length | ROBO1 | 0.04 |
0.01 |
0.97 |
0.92 |
0.8 |
0.97 |
0.98 |
0.93 |
0.74 |
0.97 |
0.97 |
0.97 |
chr3 | 78944526 | 78950672 | chr3:78944526-78950672:+:L1PA4:REF | L1PA4 | REF | full-length | ROBO1 | 0.02 |
0.95 |
0.97 |
0.97 |
0.92 |
0.97 |
0.98 |
0.91 |
0.96 |
0.96 |
0.97 |
0.97 |
chr3 | 80541011 | 80541013 | chr3:80541011-80541013:-:L1HS:NONREF | L1HS | KNR | — | — | 0.02 |
0.93 |
0.86 |
— | — | 0.86 |
— | — | 0.97 |
0.92 |
— | — |
chr3 | 80891646 | 80897665 | chr3:80891646-80897665:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.85 |
0.65 |
0.75 |
0.14 |
0.81 |
0.87 |
0.86 |
0.97 |
0.9 |
0.72 |
0.98 |
chr3 | 81010919 | 81011739 | chr3:81010919-81011739:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC02027 | 0.02 |
0.55 |
0.13 |
0.16 |
0.85 |
0.43 |
0.3 |
0.5 |
0.96 |
0.57 |
0.4 |
0.97 |
chr3 | 81051389 | 81057413 | chr3:81051389-81057413:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02027 | 0.02 |
0.61 |
0.79 |
0.9 |
0.05 |
0.79 |
0.82 |
0.79 |
0.86 |
0.85 |
0.79 |
0.94 |
chr3 | 81878123 | 81884278 | chr3:81878123-81884278:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.85 |
0.77 |
0.91 |
0.91 |
0.85 |
0.67 |
0.82 |
0.96 |
0.82 |
0.82 |
0.98 |
chr3 | 82095700 | 82095703 | chr3:82095700-82095703:-:L1HS:NONREF | L1HS | KNR | — | LINC02008 | — | 0.79 |
— | — | 0.02 |
0.9 |
— | — | — | — | — | — |
chr3 | 82104884 | 82111042 | chr3:82104884-82111042:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02008 | 0.01 |
0.81 |
0.76 |
0.74 |
0.9 |
0.8 |
0.93 |
0.77 |
0.98 |
0.85 |
0.73 |
0.99 |
chr3 | 82337499 | 82339442 | chr3:82337499-82339442:+:L1HS:REF | L1HS | REF | 3prime-truncated | LINC02008 | 0.09 |
0.88 |
0.79 |
0.86 |
0.24 |
0.84 |
0.97 |
0.86 |
0.94 |
0.87 |
0.82 |
0.98 |
chr3 | 82370309 | 82376434 | chr3:82370309-82376434:-:L1PA5:REF | L1PA5 | REF | full-length | LINC02008 | 0.01 |
0.61 |
0.59 |
0.66 |
0.93 |
0.73 |
0.81 |
0.74 |
0.93 |
0.71 |
0.68 |
0.97 |
chr3 | 84086620 | 84086868 | chr3:84086620-84086868:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.06 |
0.39 |
0.11 |
0.97 |
0.82 |
0.5 |
0.09 |
0.53 |
0.95 |
0.3 |
0.48 |
0.98 |
chr3 | 84362965 | 84366754 | chr3:84362965-84366754:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.8 |
0.57 |
0.67 |
0.99 |
0.85 |
0.65 |
0.48 |
0.55 |
0.98 |
0.69 |
0.67 |
0.96 |
chr3 | 85153071 | 85158885 | chr3:85153071-85158885:+:L1PA3:REF | L1PA3 | REF | full-length | CADM2 | 0.03 |
0.88 |
0.85 |
0.94 |
0.93 |
0.87 |
0.88 |
0.85 |
0.95 |
0.88 |
0.86 |
0.97 |
chr3 | 85289930 | 85295940 | chr3:85289930-85295940:+:L1PA2:REF | L1PA2 | REF | full-length | CADM2 | 0.0 |
0.88 |
0.77 |
0.86 |
0.85 |
0.77 |
0.57 |
0.8 |
0.94 |
0.82 |
0.73 |
0.98 |
chr3 | 85527417 | 85527423 | chr3:85527417-85527423:+:L1HS:NONREF | L1HS | KNR | — | CADM2 | 0.94 |
0.81 |
0.94 |
— | 0.06 |
0.9 |
— | — | 0.95 |
— | 0.82 |
0.98 |
chr3 | 85800462 | 85800865 | chr3:85800462-85800865:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CADM2 | 0.03 |
0.39 |
0.91 |
0.69 |
0.87 |
0.65 |
0.21 |
0.6 |
0.91 |
0.83 |
— | 0.97 |
chr3 | 87340526 | 87346504 | chr3:87340526-87346504:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.28 |
0.97 |
0.94 |
0.84 |
0.92 |
0.91 |
0.8 |
0.73 |
0.98 |
0.92 |
0.8 |
0.98 |
chr3 | 87647889 | 87654326 | chr3:87647889-87654326:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.47 |
0.98 |
0.85 |
0.91 |
0.82 |
0.55 |
0.02 |
0.7 |
0.92 |
0.95 |
0.7 |
0.97 |
chr3 | 88503101 | 88509122 | chr3:88503101-88509122:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.24 |
0.91 |
0.23 |
0.31 |
0.72 |
0.32 |
0.77 |
— | 0.07 |
0.76 |
0.95 |
chr3 | 88869833 | 88875863 | chr3:88869833-88875863:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.87 |
0.94 |
0.56 |
0.28 |
0.93 |
0.67 |
0.88 |
0.91 |
0.95 |
0.89 |
0.98 |
chr3 | 89345615 | 89351640 | chr3:89345615-89351640:-:L1PA2:REF | L1PA2 | REF | full-length | EPHA3 | 0.01 |
0.97 |
0.97 |
0.84 |
0.08 |
0.95 |
0.93 |
0.94 |
0.89 |
0.69 |
0.96 |
0.98 |
chr3 | 89460825 | 89466856 | chr3:89460825-89466856:-:L1HS:REF | L1HS | REF | full-length | EPHA3 | 0.02 |
0.98 |
0.98 |
0.82 |
0.05 |
0.92 |
0.87 |
0.93 |
0.97 |
0.97 |
0.94 |
0.98 |