Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 89747613 | 89753632 | chr3:89747613-89753632:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.81 |
0.8 |
— | 0.2 |
0.74 |
0.05 |
0.88 |
0.81 |
0.48 |
0.87 |
0.95 |
chr3 | 89869044 | 89875069 | chr3:89869044-89875069:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.96 |
0.91 |
0.68 |
0.83 |
0.8 |
0.77 |
0.84 |
0.95 |
0.89 |
0.84 |
0.97 |
chr3 | 89939076 | 89945113 | chr3:89939076-89945113:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.08 |
0.84 |
0.73 |
0.64 |
0.53 |
0.27 |
— | — | 0.2 |
0.72 |
0.97 |
chr3 | 89957833 | 89963855 | chr3:89957833-89963855:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.95 |
0.93 |
0.88 |
0.52 |
0.81 |
0.78 |
0.89 |
0.93 |
0.95 |
0.89 |
0.98 |
chr3 | 90104986 | 90111136 | chr3:90104986-90111136:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.04 |
0.93 |
0.98 |
0.74 |
0.92 |
0.69 |
0.44 |
0.91 |
0.95 |
0.92 |
0.77 |
0.99 |
chr3 | 90169567 | 90175598 | chr3:90169567-90175598:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.94 |
0.92 |
0.66 |
0.25 |
0.83 |
0.74 |
0.86 |
0.9 |
0.93 |
0.82 |
0.98 |
chr3 | 91314638 | 91320763 | chr3:91314638-91320763:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.53 |
0.18 |
0.01 |
0.74 |
0.19 |
0.01 |
0.21 |
0.51 |
0.14 |
0.18 |
0.86 |
chr3 | 93807327 | 93808615 | chr3:93807327-93808615:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.86 |
0.8 |
0.41 |
0.87 |
0.67 |
0.41 |
0.69 |
0.84 |
0.66 |
0.69 |
0.98 |
chr3 | 93846770 | 93852898 | chr3:93846770-93852898:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.58 |
0.68 |
0.13 |
0.69 |
0.33 |
0.71 |
0.47 |
0.67 |
0.63 |
0.57 |
0.95 |
chr3 | 93949717 | 93955738 | chr3:93949717-93955738:+:L1PA5:REF | L1PA5 | REF | full-length | PROS1 | 0.54 |
0.09 |
— | 0.42 |
0.6 |
0.61 |
— | 0.57 |
0.78 |
0.56 |
0.82 |
0.96 |
chr3 | 94077243 | 94081366 | chr3:94077243-94081366:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | NSUN3 | 0.84 |
0.97 |
0.96 |
0.99 |
0.84 |
0.96 |
0.98 |
0.97 |
0.93 |
0.94 |
0.99 |
0.86 |
chr3 | 94745469 | 94751496 | chr3:94745469-94751496:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.91 |
0.86 |
0.73 |
0.71 |
0.62 |
0.8 |
0.67 |
0.96 |
0.9 |
0.65 |
0.98 |
chr3 | 94836023 | 94842079 | chr3:94836023-94842079:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.95 |
0.41 |
0.72 |
0.9 |
0.64 |
0.59 |
0.66 |
0.95 |
0.75 |
0.69 |
0.98 |
chr3 | 94846027 | 94852063 | chr3:94846027-94852063:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.84 |
0.49 |
0.73 |
0.7 |
0.57 |
0.69 |
0.69 |
0.77 |
0.64 |
0.59 |
0.8 |
chr3 | 95059814 | 95065951 | chr3:95059814-95065951:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.38 |
0.95 |
0.77 |
0.85 |
0.92 |
0.79 |
0.67 |
0.81 |
0.97 |
0.9 |
0.79 |
0.99 |
chr3 | 95286705 | 95287969 | chr3:95286705-95287969:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.0 |
0.86 |
0.84 |
0.41 |
0.66 |
0.63 |
0.38 |
0.57 |
0.94 |
0.8 |
0.64 |
0.79 |
chr3 | 95657314 | 95663341 | chr3:95657314-95663341:-:L1PA3:REF | L1PA3 | REF | full-length | MTHFD2P1 | 0.01 |
0.81 |
0.71 |
0.67 |
0.85 |
0.57 |
0.19 |
0.6 |
0.95 |
0.78 |
0.61 |
0.98 |
chr3 | 96526666 | 96528751 | chr3:96526666-96528751:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.51 |
0.64 |
0.85 |
0.25 |
0.22 |
0.34 |
0.95 |
0.49 |
0.29 |
0.95 |
chr3 | 96936611 | 96942758 | chr3:96936611-96942758:-:L1PA4:REF | L1PA4 | REF | full-length | EPHA6 | 0.01 |
0.76 |
0.88 |
0.98 |
0.84 |
0.72 |
0.65 |
0.78 |
0.94 |
0.97 |
0.78 |
0.97 |
chr3 | 96979060 | 96985198 | chr3:96979060-96985198:-:L1PA5:REF | L1PA5 | REF | full-length | EPHA6 | 0.01 |
0.97 |
0.92 |
0.9 |
0.81 |
0.59 |
0.36 |
0.6 |
0.95 |
0.93 |
0.56 |
0.95 |
chr3 | 97904737 | 97910773 | chr3:97904737-97910773:-:L1PA3:REF | L1PA3 | REF | full-length | CRYBG3 | 0.03 |
0.91 |
0.97 |
0.97 |
0.18 |
0.98 |
0.85 |
0.98 |
0.84 |
0.11 |
0.93 |
0.98 |
chr3 | 98174083 | 98180245 | chr3:98174083-98180245:+:L1PA4:REF | L1PA4 | REF | full-length | OR5H15 | 0.01 |
0.29 |
0.46 |
0.39 |
0.8 |
0.57 |
0.37 |
0.49 |
0.83 |
0.51 |
0.47 |
0.83 |
chr3 | 98406586 | 98412727 | chr3:98406586-98412727:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.08 |
— | 0.04 |
0.84 |
0.27 |
0.02 |
0.55 |
0.8 |
0.01 |
0.42 |
0.95 |
chr3 | 99073672 | 99074671 | chr3:99073672-99074671:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.45 |
0.95 |
0.53 |
0.9 |
0.8 |
0.28 |
0.92 |
0.93 |
0.96 |
0.76 |
0.98 |
chr3 | 101108330 | 101114476 | chr3:101108330-101114476:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.49 |
0.58 |
0.74 |
0.55 |
0.83 |
0.92 |
0.07 |
0.91 |
0.86 |
0.89 |
0.95 |
0.92 |
chr3 | 101536931 | 101541323 | chr3:101536931-101541323:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.71 |
0.77 |
0.82 |
0.59 |
0.89 |
0.63 |
0.84 |
0.74 |
0.96 |
0.77 |
0.84 |
0.98 |
chr3 | 101605457 | 101605940 | chr3:101605457-101605940:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.49 |
0.83 |
0.91 |
0.84 |
0.62 |
0.72 |
0.51 |
0.84 |
0.89 |
0.64 |
0.78 |
0.98 |
chr3 | 101735395 | 101739625 | chr3:101735395-101739625:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CEP97 | 0.95 |
0.97 |
0.97 |
0.96 |
0.89 |
0.97 |
0.96 |
0.94 |
0.95 |
0.98 |
0.98 |
0.98 |
chr3 | 101750444 | 101754042 | chr3:101750444-101754042:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | CEP97 | 0.98 |
0.04 |
0.97 |
0.98 |
0.92 |
0.98 |
0.98 |
0.98 |
0.98 |
0.97 |
0.98 |
0.99 |
chr3 | 102008204 | 102014355 | chr3:102008204-102014355:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.96 |
0.94 |
0.96 |
0.87 |
0.98 |
0.77 |
0.99 |
0.97 |
0.9 |
0.97 |
0.95 |
chr3 | 102836264 | 102842422 | chr3:102836264-102842422:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.2 |
0.0 |
0.15 |
0.85 |
0.08 |
0.03 |
0.17 |
0.7 |
0.32 |
0.06 |
0.72 |
chr3 | 103220448 | 103226476 | chr3:103220448-103226476:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.59 |
0.67 |
0.75 |
0.15 |
0.68 |
0.77 |
0.7 |
0.83 |
0.7 |
0.71 |
0.8 |
chr3 | 103556537 | 103562569 | chr3:103556537-103562569:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.9 |
0.81 |
0.86 |
0.24 |
0.85 |
0.79 |
0.85 |
0.9 |
0.89 |
0.88 |
0.94 |
chr3 | 105296223 | 105302219 | chr3:105296223-105302219:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.94 |
0.97 |
0.16 |
0.93 |
0.31 |
0.87 |
0.91 |
0.86 |
0.93 |
0.9 |
chr3 | 106665293 | 106671324 | chr3:106665293-106671324:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.95 |
0.96 |
0.9 |
0.8 |
0.96 |
0.76 |
0.98 |
0.97 |
0.89 |
0.96 |
0.98 |
chr3 | 106975444 | 106981476 | chr3:106975444-106981476:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.93 |
0.9 |
0.83 |
0.37 |
0.91 |
0.75 |
0.86 |
0.91 |
0.75 |
0.91 |
0.91 |
chr3 | 107144092 | 107150246 | chr3:107144092-107150246:+:L1PA4:REF | L1PA4 | REF | full-length | LINC00882 | 0.19 |
0.92 |
0.92 |
0.73 |
0.87 |
0.8 |
0.52 |
0.88 |
0.95 |
0.85 |
0.91 |
0.97 |
chr3 | 107333744 | 107339866 | chr3:107333744-107339866:+:L1PA3:REF | L1PA3 | REF | full-length | DUBR | 0.24 |
0.82 |
0.89 |
0.62 |
0.78 |
0.7 |
0.35 |
0.8 |
0.94 |
0.79 |
0.69 |
0.96 |
chr3 | 107692204 | 107698221 | chr3:107692204-107698221:-:L1PA3:REF | L1PA3 | REF | full-length | BBX | 0.17 |
0.03 |
0.94 |
0.99 |
0.18 |
0.91 |
0.98 |
0.88 |
0.66 |
0.06 |
0.97 |
0.98 |
chr3 | 108369326 | 108375491 | chr3:108369326-108375491:+:L1PA4:REF | L1PA4 | REF | full-length | HHLA2 | — | 0.56 |
0.56 |
— | — | — | — | 0.79 |
— | 0.53 |
0.47 |
0.67 |
chr3 | 108749400 | 108755425 | chr3:108749400-108755425:+:L1HS:REF | L1HS | REF | full-length | RETNLB | 0.05 |
0.9 |
0.95 |
0.69 |
0.05 |
0.78 |
0.85 |
0.82 |
0.83 |
0.92 |
0.8 |
0.94 |
chr3 | 109199872 | 109205903 | chr3:109199872-109205903:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.92 |
0.96 |
0.68 |
0.15 |
0.86 |
0.87 |
0.89 |
0.94 |
0.9 |
0.9 |
0.98 |
chr3 | 109508196 | 109514400 | chr3:109508196-109514400:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.16 |
0.56 |
0.56 |
0.61 |
0.78 |
0.71 |
0.65 |
0.75 |
0.86 |
0.7 |
0.76 |
0.92 |
chr3 | 109664743 | 109670946 | chr3:109664743-109670946:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | 0.09 |
0.19 |
0.26 |
0.94 |
0.45 |
0.1 |
0.57 |
0.95 |
0.29 |
0.84 |
0.99 |
chr3 | 110000000 | 110002500 | chr3:110000000-110002500:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.04 |
0.77 |
— | — | — | 0.74 |
— | — | 0.42 |
— | — |
chr3 | 110440086 | 110446113 | chr3:110440086-110446113:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.47 |
0.31 |
0.84 |
0.89 |
0.37 |
0.97 |
0.94 |
0.9 |
0.97 |
0.76 |
0.97 |
0.98 |
chr3 | 110632031 | 110638051 | chr3:110632031-110638051:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.57 |
0.78 |
0.59 |
0.76 |
0.85 |
0.64 |
0.91 |
— | 0.77 |
0.89 |
0.93 |
chr3 | 110768850 | 110769943 | chr3:110768850-110769943:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.35 |
0.93 |
0.2 |
0.97 |
0.95 |
0.95 |
0.93 |
0.97 |
0.73 |
0.98 |
0.96 |
chr3 | 110888814 | 110890548 | chr3:110888814-110890548:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.04 |
0.93 |
0.97 |
0.86 |
0.13 |
0.97 |
0.89 |
0.97 |
0.89 |
0.02 |
0.98 |
0.99 |
chr3 | 110911437 | 110917460 | chr3:110911437-110917460:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.58 |
0.8 |
0.56 |
0.91 |
0.92 |
0.82 |
0.91 |
0.98 |
0.67 |
0.95 |
0.97 |