Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 196219370 | 196225402 | chr1:196219370-196225402:-:L1HS:REF | L1HS | REF | full-length | KCNT2 | 0.32 |
0.62 |
0.87 |
0.84 |
0.06 |
0.91 |
0.86 |
0.96 |
0.98 |
0.89 |
0.97 |
0.98 |
chr1 | 196780803 | 196786955 | chr1:196780803-196786955:-:L1PA3:REF | L1PA3 | REF | full-length | CFHR3 | — | 0.22 |
0.86 |
0.84 |
— | 0.83 |
0.75 |
— | — | 0.0 |
0.82 |
0.97 |
chr1 | 196817000 | 196818070 | chr1:196817000-196818070:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CFHR1 | 0.08 |
0.54 |
0.53 |
0.42 |
0.46 |
0.56 |
0.26 |
0.6 |
0.94 |
0.61 |
0.6 |
0.95 |
chr1 | 196935962 | 196942099 | chr1:196935962-196942099:-:L1PA6:REF | L1PA6 | REF | full-length | CFHR2 | 0.09 |
0.27 |
0.31 |
0.3 |
0.54 |
0.33 |
0.14 |
0.46 |
0.77 |
0.38 |
0.53 |
0.87 |
chr1 | 196986363 | 196992657 | chr1:196986363-196992657:-:L1PA6:REF | L1PA6 | REF | full-length | CFHR5 | 0.02 |
0.3 |
0.7 |
0.23 |
0.62 |
0.66 |
0.23 |
0.81 |
0.89 |
0.65 |
0.85 |
0.95 |
chr1 | 197707714 | 197713746 | chr1:197707714-197713746:+:L1HS:REF | L1HS | REF | full-length | DENND1B | 0.96 |
0.97 |
0.98 |
0.96 |
0.08 |
0.96 |
0.99 |
0.93 |
0.89 |
0.96 |
0.98 |
0.98 |
chr1 | 197802331 | 197803141 | chr1:197802331-197803141:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.69 |
0.97 |
0.98 |
0.91 |
0.82 |
0.95 |
0.32 |
0.97 |
0.95 |
0.95 |
0.97 |
0.97 |
chr1 | 198309446 | 198315462 | chr1:198309446-198315462:-:L1PA3:REF | L1PA3 | REF | full-length | NEK7 | 0.95 |
0.91 |
0.92 |
0.98 |
0.11 |
0.99 |
0.97 |
0.98 |
0.81 |
0.93 |
0.97 |
0.97 |
chr1 | 199647362 | 199653472 | chr1:199647362-199653472:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.6 |
0.82 |
0.3 |
0.84 |
0.55 |
0.57 |
0.72 |
0.96 |
0.68 |
0.81 |
0.97 |
chr1 | 201234105 | 201240262 | chr1:201234105-201240262:-:L1PA3:REF | L1PA3 | REF | full-length | IGFN1 | 0.02 |
0.93 |
0.91 |
0.69 |
0.9 |
0.82 |
0.83 |
0.84 |
0.93 |
0.93 |
0.84 |
0.92 |
chr1 | 203256484 | 203257899 | chr1:203256484-203257899:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.63 |
0.86 |
0.53 |
0.89 |
0.78 |
0.43 |
0.85 |
0.9 |
0.59 |
0.68 |
0.73 |
chr1 | 205400697 | 205406859 | chr1:205400697-205406859:-:L1PA3:REF | L1PA3 | REF | full-length | LEMD1 | 0.18 |
0.92 |
0.98 |
— | 0.93 |
— | 0.77 |
0.86 |
— | 0.9 |
0.78 |
0.55 |
chr1 | 205899308 | 205901278 | chr1:205899308-205901278:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LOC284581 | 0.02 |
0.97 |
0.92 |
0.49 |
0.91 |
0.97 |
0.63 |
0.82 |
0.98 |
0.91 |
0.92 |
0.97 |
chr1 | 207206734 | 207212907 | chr1:207206734-207212907:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.92 |
0.94 |
0.83 |
0.98 |
0.93 |
0.75 |
0.91 |
0.67 |
0.95 |
0.62 |
0.88 |
0.97 |
chr1 | 207730466 | 207736495 | chr1:207730466-207736495:+:L1PA2:REF | L1PA2 | REF | full-length | CR1L | 0.97 |
0.8 |
0.96 |
0.97 |
0.74 |
0.92 |
0.7 |
0.89 |
0.96 |
0.89 |
0.95 |
0.98 |
chr1 | 208702694 | 208709029 | chr1:208702694-208709029:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.85 |
0.84 |
0.34 |
0.89 |
0.82 |
0.44 |
0.75 |
0.92 |
0.6 |
0.71 |
0.86 |
chr1 | 209913771 | 209919823 | chr1:209913771-209919823:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.88 |
0.97 |
0.86 |
0.03 |
0.96 |
0.85 |
0.87 |
0.92 |
0.86 |
0.94 |
0.95 |
chr1 | 209973212 | 209979350 | chr1:209973212-209979350:-:L1PA4:REF | L1PA4 | REF | full-length | SYT14 | 0.01 |
0.57 |
0.79 |
0.54 |
0.76 |
0.86 |
0.39 |
0.74 |
0.8 |
0.55 |
0.83 |
0.63 |
chr1 | 212658025 | 212664183 | chr1:212658025-212664183:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.96 |
0.96 |
0.63 |
0.79 |
0.74 |
0.67 |
0.94 |
0.93 |
0.93 |
0.93 |
0.95 |
chr1 | 213213891 | 213220019 | chr1:213213891-213220019:+:L1PA4:REF | L1PA4 | REF | full-length | RPS6KC1 | 0.97 |
0.99 |
0.97 |
0.92 |
0.98 |
0.99 |
0.99 |
— | 0.98 |
0.97 |
0.98 |
0.9 |
chr1 | 213357935 | 213361681 | chr1:213357935-213361681:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.83 |
0.9 |
0.34 |
0.86 |
0.63 |
0.88 |
0.7 |
0.79 |
0.83 |
0.75 |
0.81 |
chr1 | 213806434 | 213808929 | chr1:213806434-213808929:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.09 |
0.96 |
0.89 |
0.52 |
0.89 |
0.75 |
0.91 |
0.8 |
0.97 |
0.85 |
0.7 |
0.94 |
chr1 | 216485645 | 216487614 | chr1:216485645-216487614:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.53 |
0.91 |
0.69 |
0.33 |
0.63 |
0.77 |
0.7 |
— | 0.81 |
0.67 |
0.97 |
chr1 | 217690492 | 217696523 | chr1:217690492-217696523:-:L1PA2:REF | L1PA2 | REF | full-length | SPATA17 | 0.05 |
0.97 |
0.93 |
0.87 |
0.08 |
0.86 |
0.59 |
0.94 |
0.98 |
0.84 |
0.98 |
0.98 |
chr1 | 219839330 | 219845537 | chr1:219839330-219845537:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.81 |
0.94 |
0.98 |
0.9 |
0.21 |
0.85 |
0.26 |
0.9 |
0.73 |
0.66 |
0.93 |
0.96 |
chr1 | 219863570 | 219869595 | chr1:219863570-219869595:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.82 |
0.91 |
0.96 |
0.77 |
0.66 |
0.7 |
0.77 |
0.81 |
0.93 |
0.94 |
0.78 |
0.96 |
chr1 | 220245155 | 220246008 | chr1:220245155-220246008:+:L1HS:REF | L1HS | REF | 3prime-truncated | RAB3GAP2 | 0.97 |
0.99 |
0.98 |
0.98 |
0.07 |
0.99 |
0.99 |
0.98 |
0.78 |
0.98 |
0.99 |
0.94 |
chr1 | 220860329 | 220864396 | chr1:220860329-220864396:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | HLX-AS1 | 0.01 |
0.48 |
0.77 |
0.61 |
0.81 |
0.52 |
0.74 |
0.49 |
0.66 |
— | 0.24 |
0.92 |
chr1 | 221383064 | 221389208 | chr1:221383064-221389208:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.23 |
0.83 |
0.97 |
0.89 |
0.9 |
0.05 |
0.81 |
0.92 |
0.63 |
0.93 |
0.9 |
chr1 | 223395534 | 223401557 | chr1:223395534-223401557:-:L1PA2:REF | L1PA2 | REF | full-length | CCDC185 | 0.87 |
0.99 |
0.98 |
0.96 |
0.21 |
0.96 |
0.89 |
0.98 |
0.93 |
0.95 |
0.98 |
0.98 |
chr1 | 223446992 | 223453023 | chr1:223446992-223453023:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.93 |
0.89 |
— | 0.89 |
0.83 |
0.72 |
— | — | 0.78 |
0.85 |
0.79 |
chr1 | 225055535 | 225061656 | chr1:225055535-225061656:-:L1PA4:REF | L1PA4 | REF | full-length | DNAH14 | 0.57 |
0.78 |
0.79 |
0.77 |
0.74 |
0.62 |
0.79 |
0.71 |
0.77 |
0.8 |
0.79 |
0.8 |
chr1 | 228520690 | 228526835 | chr1:228520690-228526835:-:L1PA4:REF | L1PA4 | REF | full-length | BTNL10 | 0.02 |
0.97 |
0.6 |
0.39 |
— | 0.73 |
0.34 |
0.78 |
— | 0.38 |
— | 0.95 |
chr1 | 233821969 | 233828387 | chr1:233821969-233828387:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.81 |
0.3 |
0.05 |
0.83 |
0.22 |
0.02 |
0.15 |
0.78 |
0.04 |
0.14 |
0.81 |
chr1 | 237019467 | 237025494 | chr1:237019467-237025494:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.62 |
0.93 |
0.62 |
0.83 |
0.79 |
0.8 |
0.82 |
0.89 |
0.78 |
0.78 |
0.86 |
chr1 | 237075264 | 237081293 | chr1:237075264-237081293:+:L1HS:REF | L1HS | REF | full-length | RYR2 | 0.02 |
0.49 |
0.97 |
0.78 |
0.1 |
0.85 |
0.84 |
0.9 |
0.86 |
0.88 |
0.85 |
0.92 |
chr1 | 239623498 | 239629523 | chr1:239623498-239629523:-:L1HS:REF | L1HS | REF | full-length | CHRM3 | 0.02 |
0.79 |
0.89 |
0.54 |
0.05 |
0.71 |
0.63 |
0.82 |
0.85 |
0.68 |
0.72 |
0.87 |
chr1 | 239637768 | 239643908 | chr1:239637768-239643908:-:L1PA3:REF | L1PA3 | REF | full-length | CHRM3 | 0.0 |
0.51 |
0.94 |
0.32 |
0.95 |
0.6 |
0.39 |
0.51 |
0.88 |
0.39 |
0.63 |
0.83 |
chr1 | 242045561 | 242051585 | chr1:242045561-242051585:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.51 |
0.9 |
0.61 |
0.2 |
0.75 |
0.56 |
0.7 |
0.85 |
0.81 |
0.73 |
0.9 |
chr1 | 242481073 | 242487222 | chr1:242481073-242487222:+:L1PA4:REF | L1PA4 | REF | full-length | PLD5 | 0.02 |
0.54 |
0.74 |
0.16 |
0.9 |
0.58 |
0.17 |
0.57 |
0.91 |
0.11 |
0.52 |
0.66 |
chr1 | 244566687 | 244569386 | chr1:244566687-244569386:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CATSPERE | 0.0 |
0.85 |
0.87 |
0.54 |
0.91 |
0.76 |
0.37 |
0.73 |
0.95 |
0.44 |
0.83 |
0.95 |
chr1 | 245816539 | 245822560 | chr1:245816539-245822560:+:L1PA3:REF | L1PA3 | REF | full-length | SMYD3 | 0.96 |
0.98 |
0.98 |
0.89 |
0.82 |
0.98 |
0.99 |
0.98 |
0.97 |
0.96 |
0.92 |
0.99 |
chr1 | 247954964 | 247961087 | chr1:247954964-247961087:-:L1PA4:REF | L1PA4 | REF | full-length | OR2L13 | 0.01 |
0.34 |
0.65 |
0.1 |
0.73 |
0.45 |
0.23 |
0.5 |
0.69 |
0.08 |
0.48 |
0.3 |
chr1 | 248067512 | 248073636 | chr1:248067512-248073636:+:L1PA3:REF | L1PA3 | REF | full-length | OR2L13 | 0.01 |
0.05 |
— | 0.44 |
0.43 |
0.68 |
0.36 |
0.68 |
0.82 |
0.42 |
0.69 |
0.48 |
chr1 | 248166557 | 248172589 | chr1:248166557-248172589:-:L1PA2:REF | L1PA2 | REF | full-length | OR2M2 | 0.01 |
0.19 |
0.51 |
0.49 |
0.06 |
0.61 |
0.3 |
0.62 |
0.73 |
0.38 |
0.59 |
0.75 |
chr1 | 248252861 | 248258877 | chr1:248252861-248258877:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.21 |
0.72 |
0.4 |
0.88 |
0.68 |
0.58 |
0.68 |
0.9 |
0.3 |
0.75 |
0.7 |
chr1 | 248527957 | 248533941 | chr1:248527957-248533941:+:L1PA3:REF | L1PA3 | REF | full-length | OR2G6 | 0.04 |
0.26 |
0.53 |
0.41 |
0.83 |
0.65 |
0.55 |
0.7 |
0.82 |
0.36 |
0.68 |
0.66 |
chr2 | 799542 | 805567 | chr2:799542-805567:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01115 | 0.13 |
0.07 |
0.89 |
0.66 |
0.55 |
0.75 |
0.62 |
0.75 |
0.88 |
0.84 |
0.76 |
0.84 |
chr2 | 3030542 | 3033219 | chr2:3030542-3033219:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC01250 | 0.0 |
0.21 |
0.69 |
0.26 |
0.91 |
0.61 |
0.6 |
0.58 |
0.95 |
0.29 |
0.56 |
0.6 |
chr2 | 3369246 | 3375395 | chr2:3369246-3375395:+:L1PA3:REF | L1PA3 | REF | full-length | EIPR1 | 0.89 |
0.01 |
0.9 |
0.01 |
0.82 |
0.9 |
0.15 |
0.9 |
0.89 |
0.9 |
0.9 |
0.9 |