Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 21395009 | 21401039 | chr12:21395009-21401039:+:L1PA2:REF | L1PA2 | REF | full-length | SLCO1A2 | — | 0.83 |
0.88 |
— | 0.02 |
— | — | — | — | 0.85 |
0.79 |
0.97 |
chr12 | 21622800 | 21627711 | chr12:21622800-21627711:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LDHB | 0.77 |
0.54 |
0.96 |
0.85 |
0.93 |
0.87 |
0.11 |
0.9 |
0.95 |
0.93 |
0.73 |
0.98 |
chr12 | 22146187 | 22147432 | chr12:22146187-22147432:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
0.94 |
0.72 |
0.07 |
0.87 |
0.52 |
0.63 |
0.7 |
0.98 |
0.73 |
0.68 |
0.94 |
chr12 | 22400101 | 22406177 | chr12:22400101-22406177:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.88 |
0.23 |
0.1 |
0.83 |
0.38 |
0.12 |
0.58 |
0.94 |
0.05 |
0.47 |
0.93 |
chr12 | 23070636 | 23076652 | chr12:23070636-23076652:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.48 |
0.89 |
0.54 |
0.75 |
0.78 |
0.81 |
0.78 |
— | 0.84 |
0.88 |
0.85 |
chr12 | 23821799 | 23825530 | chr12:23821799-23825530:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SOX5 | 0.85 |
0.93 |
0.91 |
0.2 |
0.89 |
0.58 |
0.98 |
0.94 |
0.96 |
0.92 |
0.78 |
0.46 |
chr12 | 25486954 | 25489653 | chr12:25486954-25489653:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | LMNTD1 | 0.02 |
0.9 |
0.97 |
0.85 |
0.02 |
0.97 |
0.8 |
0.89 |
0.56 |
0.97 |
0.99 |
0.98 |
chr12 | 25536714 | 25542734 | chr12:25536714-25542734:+:L1PA3:REF | L1PA3 | REF | full-length | LMNTD1 | 0.0 |
0.97 |
0.93 |
0.96 |
0.68 |
0.88 |
0.69 |
0.97 |
0.9 |
0.91 |
0.93 |
0.87 |
chr12 | 26669557 | 26675709 | chr12:26669557-26675709:+:L1PA3:REF | L1PA3 | REF | full-length | ITPR2 | 0.76 |
0.97 |
0.96 |
0.98 |
0.87 |
0.96 |
0.98 |
0.97 |
0.97 |
0.95 |
0.97 |
0.98 |
chr12 | 27404617 | 27410753 | chr12:27404617-27410753:+:L1PA4:REF | L1PA4 | REF | full-length | ARNTL2 | 0.16 |
0.98 |
0.98 |
0.99 |
0.92 |
0.98 |
0.98 |
0.99 |
0.99 |
0.97 |
0.98 |
0.98 |
chr12 | 28073477 | 28073480 | chr12:28073477-28073480:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.81 |
0.82 |
0.72 |
0.12 |
— | 0.63 |
0.81 |
0.81 |
0.77 |
0.82 |
0.83 |
chr12 | 28760230 | 28761118 | chr12:28760230-28761118:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.11 |
0.53 |
0.93 |
0.89 |
0.63 |
0.89 |
0.68 |
0.94 |
0.97 |
0.86 |
0.94 |
0.97 |
chr12 | 29322812 | 29323063 | chr12:29322812-29323063:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | FAR2 | 0.97 |
0.94 |
0.94 |
0.98 |
0.91 |
0.94 |
0.98 |
0.99 |
0.9 |
0.91 |
0.97 |
0.97 |
chr12 | 29406310 | 29412472 | chr12:29406310-29412472:-:L1PA3:REF | L1PA3 | REF | full-length | OVCH1-AS1 | 0.19 |
0.79 |
0.84 |
0.87 |
0.82 |
0.79 |
0.75 |
0.79 |
0.8 |
0.75 |
0.86 |
0.85 |
chr12 | 29809726 | 29815750 | chr12:29809726-29815750:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.6 |
0.9 |
0.3 |
0.9 |
0.86 |
0.83 |
0.86 |
0.91 |
0.92 |
0.95 |
0.88 |
chr12 | 29909925 | 29916045 | chr12:29909925-29916045:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.66 |
0.52 |
0.6 |
0.93 |
0.48 |
0.03 |
0.64 |
0.93 |
0.3 |
0.87 |
0.91 |
chr12 | 30588353 | 30594511 | chr12:30588353-30594511:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.13 |
0.07 |
0.96 |
0.79 |
0.98 |
0.83 |
0.7 |
0.85 |
— | 0.72 |
0.97 |
0.97 |
chr12 | 30603853 | 30608559 | chr12:30603853-30608559:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.16 |
0.82 |
0.88 |
0.61 |
0.67 |
0.69 |
0.82 |
0.88 |
0.77 |
0.83 |
0.97 |
0.86 |
chr12 | 31163074 | 31169094 | chr12:31163074-31169094:+:L1PA3:REF | L1PA3 | REF | full-length | OVOS2 | 0.34 |
0.85 |
0.97 |
0.79 |
0.06 |
0.84 |
0.84 |
0.85 |
0.85 |
0.11 |
0.92 |
0.97 |
chr12 | 31550066 | 31556205 | chr12:31550066-31556205:-:L1PA4:REF | L1PA4 | REF | full-length | DENND5B | 0.2 |
0.87 |
0.9 |
0.89 |
0.94 |
0.87 |
0.87 |
0.93 |
0.93 |
0.94 |
0.92 |
0.92 |
chr12 | 33102281 | 33108456 | chr12:33102281-33108456:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.74 |
0.49 |
0.25 |
0.89 |
0.42 |
0.52 |
0.6 |
0.91 |
0.06 |
0.45 |
0.52 |
chr12 | 33141767 | 33147912 | chr12:33141767-33147912:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.97 |
0.69 |
0.06 |
0.86 |
0.78 |
0.05 |
0.79 |
0.97 |
0.32 |
0.8 |
0.87 |
chr12 | 33772866 | 33779014 | chr12:33772866-33779014:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.54 |
0.84 |
0.46 |
0.15 |
0.86 |
0.54 |
0.58 |
0.59 |
0.91 |
0.2 |
0.6 |
0.59 |
chr12 | 33864388 | 33864390 | chr12:33864388-33864390:-:L1HS:NONREF | L1HS | KNR | — | — | 0.68 |
0.98 |
0.88 |
— | — | 0.86 |
0.89 |
— | — | 0.61 |
0.79 |
0.88 |
chr12 | 33930454 | 33936566 | chr12:33930454-33936566:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.44 |
0.97 |
0.35 |
0.22 |
0.87 |
0.56 |
0.45 |
0.53 |
0.9 |
0.07 |
0.53 |
0.55 |
chr12 | 34066822 | 34072846 | chr12:34066822-34072846:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.93 |
0.49 |
0.37 |
0.84 |
0.53 |
0.61 |
0.44 |
0.78 |
0.32 |
0.68 |
0.72 |
chr12 | 34133333 | 34136632 | chr12:34133333-34136632:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.47 |
0.35 |
0.36 |
0.32 |
0.86 |
0.48 |
0.42 |
0.53 |
0.78 |
0.2 |
0.58 |
0.91 |
chr12 | 34464049 | 34470194 | chr12:34464049-34470194:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.5 |
0.09 |
0.22 |
0.59 |
0.26 |
0.05 |
0.3 |
0.6 |
0.08 |
0.26 |
0.36 |
chr12 | 34608506 | 34614654 | chr12:34608506-34614654:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.53 |
0.23 |
0.04 |
0.64 |
0.2 |
0.02 |
0.3 |
0.52 |
0.02 |
0.22 |
0.15 |
chr12 | 37681608 | 37687760 | chr12:37681608-37687760:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.93 |
0.9 |
0.15 |
0.89 |
0.53 |
0.28 |
0.61 |
0.74 |
0.72 |
0.41 |
0.83 |
chr12 | 37786910 | 37793054 | chr12:37786910-37793054:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.14 |
0.09 |
0.05 |
0.76 |
0.2 |
0.02 |
0.22 |
0.59 |
0.01 |
0.24 |
0.25 |
chr12 | 38031433 | 38037568 | chr12:38031433-38037568:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.36 |
0.14 |
0.66 |
0.29 |
0.18 |
0.4 |
0.6 |
0.05 |
0.72 |
0.68 |
chr12 | 38507885 | 38510299 | chr12:38507885-38510299:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.04 |
0.5 |
0.67 |
0.5 |
0.18 |
0.0 |
0.16 |
— | 0.48 |
0.08 |
0.88 |
chr12 | 38656903 | 38659786 | chr12:38656903-38659786:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CPNE8 | 0.49 |
0.17 |
0.96 |
0.97 |
0.96 |
0.71 |
0.61 |
0.61 |
— | 0.92 |
0.55 |
1.0 |
chr12 | 38799646 | 38805673 | chr12:38799646-38805673:+:L1HS:REF | L1HS | REF | full-length | CPNE8 | 0.12 |
0.52 |
0.74 |
0.84 |
0.09 |
0.76 |
0.75 |
0.8 |
0.83 |
0.63 |
0.61 |
0.75 |
chr12 | 38963466 | 38969603 | chr12:38963466-38969603:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.51 |
0.73 |
0.56 |
0.68 |
0.66 |
0.29 |
0.78 |
0.66 |
0.64 |
0.59 |
0.89 |
chr12 | 38987676 | 38992577 | chr12:38987676-38992577:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.23 |
0.69 |
0.57 |
0.75 |
0.51 |
0.24 |
0.62 |
0.78 |
0.55 |
0.59 |
0.96 |
chr12 | 39469654 | 39475805 | chr12:39469654-39475805:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.56 |
0.23 |
0.81 |
0.74 |
0.9 |
0.55 |
0.33 |
0.51 |
0.94 |
0.83 |
0.63 |
0.97 |
chr12 | 39699134 | 39705085 | chr12:39699134-39705085:+:L1PA3:REF | L1PA3 | REF | full-length | C12orf40 | 0.09 |
0.89 |
0.92 |
0.92 |
0.92 |
0.79 |
0.36 |
0.78 |
0.96 |
0.88 |
0.8 |
0.98 |
chr12 | 39745958 | 39752060 | chr12:39745958-39752060:+:L1PA5:REF | L1PA5 | REF | full-length | C12orf40 | 0.15 |
0.91 |
0.87 |
0.89 |
0.87 |
0.81 |
0.41 |
0.73 |
0.97 |
0.93 |
0.93 |
0.99 |
chr12 | 39978316 | 39984339 | chr12:39978316-39984339:+:L1PA2:REF | L1PA2 | REF | full-length | SLC2A13 | 0.59 |
0.98 |
0.96 |
0.97 |
0.1 |
0.96 |
0.94 |
0.93 |
0.92 |
0.97 |
0.98 |
0.98 |
chr12 | 41081468 | 41087471 | chr12:41081468-41087471:-:L1PA3:REF | L1PA3 | REF | full-length | CNTN1 | — | 0.74 |
0.9 |
0.55 |
0.76 |
0.78 |
0.56 |
— | — | 0.85 |
0.67 |
0.9 |
chr12 | 41637415 | 41643440 | chr12:41637415-41643440:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.77 |
0.92 |
0.5 |
0.67 |
0.73 |
0.45 |
0.82 |
— | 0.94 |
0.78 |
0.99 |
chr12 | 41666304 | 41672330 | chr12:41666304-41672330:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.74 |
0.74 |
0.51 |
0.76 |
0.66 |
0.74 |
0.69 |
0.8 |
0.77 |
0.67 |
0.77 |
chr12 | 41672452 | 41678469 | chr12:41672452-41678469:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.89 |
0.91 |
0.64 |
0.9 |
0.8 |
0.84 |
0.78 |
0.94 |
0.92 |
0.7 |
0.96 |
chr12 | 41973167 | 41979337 | chr12:41973167-41979337:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.94 |
0.91 |
0.58 |
0.9 |
0.85 |
0.9 |
0.79 |
0.93 |
0.92 |
0.79 |
0.92 |
chr12 | 42062980 | 42069120 | chr12:42062980-42069120:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.96 |
0.88 |
0.63 |
0.89 |
0.75 |
0.55 |
0.84 |
0.96 |
0.85 |
0.72 |
0.96 |
chr12 | 42111145 | 42117288 | chr12:42111145-42117288:+:L1PA4:REF | L1PA4 | REF | full-length | GXYLT1 | 0.88 |
0.93 |
0.98 |
0.97 |
0.85 |
0.91 |
0.92 |
0.92 |
0.9 |
0.96 |
0.91 |
0.98 |
chr12 | 43227726 | 43233750 | chr12:43227726-43233750:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.16 |
0.85 |
0.96 |
0.77 |
0.23 |
0.93 |
0.85 |
0.96 |
0.96 |
0.94 |
0.92 |
0.99 |
chr12 | 43470973 | 43477008 | chr12:43470973-43477008:+:L1PA2:REF | L1PA2 | REF | full-length | ADAMTS20 | 0.02 |
0.83 |
0.79 |
0.63 |
0.13 |
0.82 |
0.8 |
0.76 |
0.93 |
0.83 |
0.83 |
0.91 |