Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 106469285 | 106475319 | chrX:106469285-106475319:+:L1HS:REF | L1HS | REF | full-length | — | 0.09 |
0.96 |
0.86 |
0.76 |
0.1 |
0.88 |
0.96 |
0.8 |
0.92 |
0.85 |
0.89 |
0.98 |
chrX | 106490609 | 106494307 | chrX:106490609-106494307:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
0.83 |
0.6 |
0.19 |
0.61 |
0.51 |
0.77 |
0.5 |
0.74 |
0.47 |
0.16 |
0.97 |
chrX | 107155767 | 107161785 | chrX:107155767-107161785:+:L1PA2:REF | L1PA2 | REF | full-length | NUP62CL | 0.01 |
0.12 |
0.55 |
0.99 |
0.05 |
0.37 |
0.96 |
0.48 |
0.34 |
0.58 |
0.11 |
0.08 |
chrX | 107364336 | 107370349 | chrX:107364336-107370349:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.88 |
0.85 |
0.77 |
0.15 |
0.82 |
0.82 |
0.74 |
0.84 |
0.79 |
0.8 |
0.97 |
chrX | 108277015 | 108283183 | chrX:108277015-108283183:+:L1PA3:REF | L1PA3 | REF | full-length | COL4A6 | 0.01 |
0.84 |
0.71 |
0.96 |
0.9 |
0.72 |
0.98 |
0.86 |
0.95 |
0.76 |
0.98 |
0.97 |
chrX | 108542109 | 108548255 | chrX:108542109-108548255:-:L1PA5:REF | L1PA5 | REF | full-length | COL4A5 | 0.48 |
0.89 |
0.58 |
0.99 |
0.95 |
0.86 |
0.99 |
0.83 |
0.96 |
0.93 |
0.99 |
0.98 |
chrX | 109010403 | 109015566 | chrX:109010403-109015566:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.04 |
0.15 |
0.02 |
0.75 |
0.18 |
0.01 |
0.2 |
0.77 |
0.05 |
0.29 |
0.97 |
chrX | 109019329 | 109025469 | chrX:109019329-109025469:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.08 |
0.16 |
0.01 |
0.88 |
0.31 |
0.01 |
0.19 |
0.96 |
0.04 |
0.37 |
0.93 |
chrX | 109083336 | 109089721 | chrX:109083336-109089721:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | 0.27 |
0.31 |
0.05 |
0.83 |
0.42 |
— | 0.6 |
— | 0.07 |
0.43 |
0.87 |
chrX | 109113307 | 109119363 | chrX:109113307-109119363:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.49 |
0.46 |
— | 0.77 |
0.69 |
0.56 |
0.65 |
0.9 |
0.32 |
0.55 |
0.97 |
chrX | 110605828 | 110611851 | chrX:110605828-110611851:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.07 |
0.7 |
0.34 |
0.86 |
0.84 |
0.78 |
0.7 |
0.7 |
— | 0.49 |
0.9 |
chrX | 110640008 | 110646163 | chrX:110640008-110646163:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.49 |
0.43 |
0.07 |
0.89 |
0.52 |
0.46 |
0.44 |
0.84 |
0.14 |
0.4 |
0.51 |
chrX | 110816764 | 110822773 | chrX:110816764-110822773:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.92 |
0.85 |
0.82 |
0.47 |
0.94 |
0.94 |
0.9 |
0.98 |
0.8 |
0.86 |
0.94 |
chrX | 110898394 | 110904467 | chrX:110898394-110904467:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.66 |
0.4 |
0.25 |
0.88 |
0.49 |
0.0 |
0.51 |
— | 0.14 |
0.55 |
0.3 |
chrX | 111588704 | 111594727 | chrX:111588704-111594727:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.94 |
0.83 |
0.79 |
0.38 |
0.83 |
0.87 |
0.72 |
0.97 |
0.77 |
0.85 |
0.97 |
chrX | 111962838 | 111968972 | chrX:111962838-111968972:+:L1PA4:REF | L1PA4 | REF | full-length | TRPC5 | 0.04 |
0.73 |
0.69 |
0.61 |
0.9 |
0.78 |
0.57 |
0.83 |
0.93 |
0.57 |
0.8 |
0.98 |
chrX | 112326145 | 112332160 | chrX:112326145-112332160:+:L1PA3:REF | L1PA3 | REF | full-length | RTL4 | — | 0.66 |
0.53 |
— | 0.87 |
— | 0.58 |
— | — | 0.55 |
0.62 |
0.99 |
chrX | 112461810 | 112467973 | chrX:112461810-112467973:+:L1PA7:REF | L1PA7 | REF | full-length | RTL4 | 0.01 |
0.28 |
0.16 |
0.04 |
0.67 |
0.16 |
0.02 |
0.4 |
0.82 |
0.12 |
0.1 |
0.81 |
chrX | 112590123 | 112596271 | chrX:112590123-112596271:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.53 |
0.58 |
0.63 |
0.91 |
0.68 |
0.74 |
0.81 |
0.87 |
0.57 |
0.82 |
0.96 |
chrX | 112718609 | 112724627 | chrX:112718609-112724627:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.12 |
0.9 |
0.82 |
0.85 |
— | 0.86 |
0.78 |
0.76 |
0.52 |
0.84 |
0.89 |
0.98 |
chrX | 113337822 | 113343853 | chrX:113337822-113343853:-:L1PA2:REF | L1PA2 | REF | full-length | LOC101928437 | 0.02 |
0.74 |
0.83 |
0.84 |
0.9 |
0.84 |
0.64 |
0.89 |
0.96 |
— | 0.85 |
0.98 |
chrX | 114720516 | 114726531 | chrX:114720516-114726531:-:L1PA2:REF | L1PA2 | REF | full-length | HTR2C | 0.01 |
0.32 |
0.56 |
0.6 |
0.94 |
0.81 |
0.71 |
0.81 |
0.95 |
0.59 |
0.84 |
0.98 |
chrX | 114830697 | 114836732 | chrX:114830697-114836732:-:L1PA2:REF | L1PA2 | REF | full-length | HTR2C | 0.01 |
0.26 |
0.68 |
0.53 |
0.09 |
0.85 |
0.58 |
0.75 |
0.94 |
0.53 |
0.81 |
0.98 |
chrX | 115080436 | 115086611 | chrX:115080436-115086611:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.14 |
0.6 |
0.27 |
0.9 |
0.94 |
0.17 |
0.85 |
0.96 |
0.6 |
0.96 |
0.97 |
chrX | 116121201 | 116127338 | chrX:116121201-116127338:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.46 |
0.15 |
0.07 |
0.83 |
0.32 |
0.31 |
0.34 |
0.8 |
0.18 |
0.3 |
0.94 |
chrX | 116159201 | 116165340 | chrX:116159201-116165340:+:L1PA3:REF | L1PA3 | REF | full-length | AGTR2 | 0.02 |
0.8 |
— | 0.56 |
0.86 |
0.47 |
0.18 |
0.59 |
0.87 |
0.27 |
0.49 |
0.96 |
chrX | 116964806 | 116970835 | chrX:116964806-116970835:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.57 |
0.68 |
0.82 |
0.77 |
0.4 |
0.77 |
0.92 |
0.37 |
0.73 |
0.98 |
chrX | 117260691 | 117266821 | chrX:117260691-117266821:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.76 |
0.61 |
0.75 |
0.82 |
— | — | — | 0.84 |
0.32 |
0.68 |
0.89 |
chrX | 117555691 | 117561795 | chrX:117555691-117561795:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.84 |
0.56 |
0.73 |
0.85 |
0.51 |
0.64 |
0.5 |
0.93 |
0.06 |
0.47 |
0.94 |
chrX | 117727933 | 117733746 | chrX:117727933-117733746:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.89 |
0.67 |
0.74 |
0.26 |
0.72 |
0.77 |
0.58 |
0.88 |
0.56 |
0.79 |
0.93 |
chrX | 117827446 | 117833592 | chrX:117827446-117833592:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.84 |
0.64 |
0.62 |
0.87 |
0.73 |
0.47 |
0.71 |
0.91 |
0.52 |
0.68 |
0.93 |
chrX | 117873996 | 117880023 | chrX:117873996-117880023:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.7 |
0.67 |
— | 0.57 |
0.64 |
0.66 |
0.7 |
— | 0.56 |
0.75 |
0.85 |
chrX | 118241706 | 118247865 | chrX:118241706-118247865:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.65 |
0.5 |
0.65 |
0.66 |
0.91 |
0.54 |
0.75 |
— | 0.35 |
0.52 |
1.0 |
chrX | 119435468 | 119441493 | chrX:119435468-119441493:-:L1HS:REF | L1HS | REF | full-length | SLC25A43 | 0.02 |
0.65 |
0.9 |
0.98 |
0.08 |
0.98 |
0.98 |
0.75 |
0.81 |
0.25 |
0.98 |
0.98 |
chrX | 121531198 | 121537361 | chrX:121531198-121537361:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.49 |
0.86 |
0.57 |
0.63 |
0.88 |
0.74 |
0.57 |
0.66 |
0.91 |
0.31 |
0.66 |
0.97 |
chrX | 121877356 | 121883520 | chrX:121877356-121883520:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.44 |
0.96 |
0.86 |
0.77 |
— | 0.98 |
0.93 |
0.86 |
— | 0.73 |
0.83 |
0.98 |
chrX | 123648005 | 123654416 | chrX:123648005-123654416:+:L1PA7:REF | L1PA7 | REF | full-length | THOC2 | — | 0.35 |
0.43 |
— | — | — | 0.7 |
0.68 |
— | 0.14 |
0.63 |
— |
chrX | 124104425 | 124110535 | chrX:124104425-124110535:-:L1PA4:REF | L1PA4 | REF | full-length | STAG2 | 0.89 |
0.93 |
0.67 |
0.95 |
0.9 |
0.97 |
0.94 |
0.77 |
0.96 |
0.67 |
0.99 |
0.87 |
chrX | 124582570 | 124588702 | chrX:124582570-124588702:+:L1PA3:REF | L1PA3 | REF | full-length | TENM1 | 0.61 |
0.42 |
0.59 |
0.37 |
0.89 |
0.81 |
0.86 |
0.82 |
0.96 |
0.4 |
0.64 |
0.86 |
chrX | 124751493 | 124757642 | chrX:124751493-124757642:-:L1PA3:REF | L1PA3 | REF | full-length | TENM1 | 0.9 |
0.77 |
0.68 |
0.22 |
0.93 |
0.74 |
0.81 |
0.76 |
0.95 |
0.47 |
0.81 |
0.84 |
chrX | 125608955 | 125614969 | chrX:125608955-125614969:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.31 |
0.61 |
0.81 |
0.77 |
0.14 |
0.82 |
0.87 |
0.72 |
0.88 |
0.65 |
0.8 |
0.91 |
chrX | 125838860 | 125845012 | chrX:125838860-125845012:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.48 |
0.62 |
0.42 |
0.92 |
0.73 |
0.51 |
0.77 |
0.95 |
0.43 |
0.71 |
0.85 |
chrX | 125917350 | 125923787 | chrX:125917350-125923787:-:L1PA8:REF | L1PA8 | REF | full-length | — | 0.02 |
0.02 |
0.0 |
0.03 |
0.82 |
0.42 |
0.0 |
0.37 |
0.87 |
0.02 |
0.39 |
0.12 |
chrX | 126104124 | 126110137 | chrX:126104124-126110137:-:L1PA3:REF | L1PA3 | REF | full-length | LOC101928495 | 0.03 |
0.12 |
0.62 |
0.6 |
0.05 |
0.7 |
0.77 |
0.67 |
0.94 |
0.45 |
0.65 |
0.7 |
chrX | 126185218 | 126191252 | chrX:126185218-126191252:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.71 |
0.59 |
0.55 |
0.9 |
0.75 |
0.69 |
0.78 |
0.97 |
0.47 |
0.81 |
0.76 |
chrX | 126229456 | 126235427 | chrX:126229456-126235427:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.54 |
0.55 |
— | 0.94 |
0.52 |
0.9 |
0.72 |
— | 0.43 |
0.72 |
0.88 |
chrX | 126459945 | 126460670 | chrX:126459945-126460670:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.0 |
0.67 |
0.56 |
0.52 |
0.07 |
0.74 |
0.02 |
0.58 |
0.16 |
0.47 |
0.77 |
0.77 |
chrX | 126946790 | 126952887 | chrX:126946790-126952887:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.31 |
0.22 |
0.04 |
0.85 |
0.29 |
0.01 |
0.28 |
0.79 |
0.02 |
0.23 |
0.1 |
chrX | 127116697 | 127122729 | chrX:127116697-127122729:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.73 |
0.54 |
0.52 |
0.36 |
0.73 |
0.69 |
0.62 |
0.88 |
0.49 |
0.7 |
0.74 |
chrX | 127250463 | 127256492 | chrX:127250463-127256492:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.75 |
0.67 |
0.66 |
0.4 |
0.81 |
0.79 |
0.73 |
0.87 |
0.57 |
0.76 |
0.86 |