Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 34566055 | 34572105 | chr1:34566055-34572105:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.84 |
0.94 |
0.67 |
0.6 |
0.82 |
0.79 |
0.74 |
0.9 |
0.63 |
0.84 |
0.89 |
chr1 | 65390008 | 65390010 | chr1:65390008-65390010:-:L1HS:NONREF | L1HS | KNR | — | DNAJC6 | — | — | — | 0.86 |
— | — | — | — | — | — | — | — |
chr1 | 67078891 | 67084915 | chr1:67078891-67084915:-:L1HS:REF | L1HS | REF | full-length | C1orf141 | 0.85 |
0.94 |
0.95 |
0.86 |
0.28 |
0.9 |
0.92 |
0.95 |
0.98 |
0.87 |
0.97 |
0.97 |
chr1 | 68736693 | 68740136 | chr1:68736693-68740136:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.64 |
0.89 |
0.72 |
0.12 |
0.81 |
0.75 |
0.81 |
0.95 |
0.56 |
— | 0.98 |
chr1 | 77000000 | 77005515 | chr1:77000000-77005515:-:L1HS:REF | L1HS | REF | 3prime-truncated | ST6GALNAC5 | 0.03 |
0.92 |
0.91 |
0.49 |
0.2 |
0.91 |
0.84 |
0.8 |
0.92 |
0.88 |
0.91 |
0.97 |
chr1 | 78485728 | 78485730 | chr1:78485728-78485730:+:L1HS:NONREF | L1HS | KNR | — | PTGFR | — | — | — | 0.84 |
— | — | — | — | — | — | — | — |
chr1 | 80939203 | 80945257 | chr1:80939203-80945257:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.95 |
0.91 |
— | 0.38 |
0.78 |
0.84 |
— | 0.95 |
0.93 |
0.81 |
0.98 |
chr1 | 84052389 | 84058406 | chr1:84052389-84058406:-:L1HS:REF | L1HS | REF | full-length | — | 0.7 |
— | 0.97 |
— | — | 0.94 |
— | — | — | 0.94 |
— | — |
chr1 | 85748519 | 85754548 | chr1:85748519-85754548:+:L1HS:REF | L1HS | REF | full-length | COL24A1 | 0.02 |
0.9 |
0.85 |
0.8 |
0.06 |
0.89 |
0.93 |
0.92 |
0.95 |
0.86 |
0.97 |
0.95 |
chr1 | 85927067 | 85933100 | chr1:85927067-85933100:+:L1HS:REF | L1HS | REF | full-length | COL24A1 | 0.09 |
0.84 |
0.89 |
0.8 |
0.11 |
0.9 |
0.83 |
0.89 |
0.91 |
0.86 |
0.95 |
0.91 |
chr1 | 86679080 | 86685111 | chr1:86679080-86685111:-:L1HS:REF | L1HS | REF | full-length | CLCA4-AS1 | 0.47 |
0.77 |
0.94 |
0.81 |
0.09 |
0.89 |
0.94 |
0.92 |
0.9 |
0.9 |
0.9 |
0.98 |
chr1 | 95336285 | 95336287 | chr1:95336285-95336287:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.87 |
0.9 |
— | — | — | — | — | — | 0.72 |
— | 0.96 |
chr1 | 98756374 | 98756376 | chr1:98756374-98756376:-:L1HS:NONREF | L1HS | KNR | — | SNX7 | — | — | — | — | — | — | 0.92 |
— | — | — | — | — |
chr1 | 102103367 | 102103369 | chr1:102103367-102103369:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.69 |
0.05 |
0.72 |
0.86 |
— | — | — | — | 0.92 |
chr1 | 104770247 | 104776278 | chr1:104770247-104776278:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.86 |
0.83 |
0.87 |
0.16 |
0.87 |
0.89 |
0.87 |
0.93 |
0.95 |
0.85 |
0.98 |
chr1 | 104843833 | 104849864 | chr1:104843833-104849864:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.81 |
0.87 |
0.76 |
0.05 |
0.8 |
0.88 |
0.86 |
0.98 |
0.95 |
0.85 |
0.92 |
chr1 | 105315153 | 105315155 | chr1:105315153-105315155:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.92 |
— | — | — | 0.88 |
— | — | — | — |
chr1 | 113497220 | 113500000 | chr1:113497220-113500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | MAGI3 | 0.65 |
0.99 |
0.98 |
0.97 |
0.2 |
0.98 |
0.99 |
0.97 |
0.77 |
0.98 |
0.99 |
0.98 |
chr1 | 118852351 | 118858380 | chr1:118852351-118858380:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.49 |
0.95 |
0.81 |
0.12 |
0.88 |
0.94 |
0.71 |
0.72 |
0.89 |
0.79 |
0.92 |
chr1 | 121532230 | 121538261 | chr1:121532230-121538261:-:L1HS:REF | L1HS | REF | full-length | EMBP1 | 0.04 |
0.96 |
0.96 |
0.86 |
0.06 |
0.87 |
0.98 |
0.86 |
0.91 |
0.96 |
0.87 |
0.95 |
chr1 | 146717192 | 146723218 | chr1:146717192-146723218:-:L1HS:REF | L1HS | REF | full-length | HYDIN2 | 0.09 |
0.97 |
0.95 |
0.78 |
0.14 |
0.93 |
0.88 |
0.89 |
0.94 |
0.94 |
0.89 |
0.95 |
chr1 | 165583897 | 165583899 | chr1:165583897-165583899:-:L1HS:NONREF | L1HS | KNR | — | LRRC52-AS1 | — | 0.96 |
— | — | — | — | — | 0.84 |
— | — | — | — |
chr1 | 166243053 | 166249084 | chr1:166243053-166249084:-:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.52 |
0.91 |
0.77 |
0.12 |
0.8 |
0.85 |
0.84 |
0.85 |
0.59 |
0.81 |
0.57 |
chr1 | 174590323 | 174596379 | chr1:174590323-174596379:-:L1HS:REF | L1HS | REF | full-length | RABGAP1L | 0.75 |
0.97 |
0.97 |
0.91 |
0.05 |
0.93 |
0.97 |
0.92 |
0.92 |
0.95 |
0.96 |
0.98 |
chr1 | 179606225 | 179606227 | chr1:179606225-179606227:-:L1HS:NONREF | L1HS | KNR | — | TDRD5 | 0.08 |
0.9 |
0.95 |
0.87 |
0.05 |
— | — | — | 0.89 |
0.82 |
0.8 |
— |
chr1 | 180866811 | 180872843 | chr1:180866811-180872843:-:L1HS:REF | L1HS | REF | full-length | XPR1 | 0.91 |
0.95 |
0.97 |
0.98 |
0.08 |
0.94 |
0.98 |
0.87 |
0.66 |
0.97 |
0.96 |
0.95 |
chr1 | 184000536 | 184000538 | chr1:184000536-184000538:-:L1HS:NONREF | L1HS | KNR | — | COLGALT2 | — | — | — | — | — | — | — | — | — | — | — | 0.7 |
chr1 | 184845616 | 184851641 | chr1:184845616-184851641:+:L1HS:REF | L1HS | REF | full-length | FAM129A | 0.94 |
— | — | 0.89 |
0.16 |
0.97 |
— | 0.97 |
— | — | — | 0.97 |
chr1 | 187343764 | 187349794 | chr1:187343764-187349794:-:L1HS:REF | L1HS | REF | full-length | LINC01036 | 0.19 |
0.96 |
0.81 |
0.85 |
0.13 |
0.75 |
0.81 |
0.94 |
0.97 |
0.83 |
0.95 |
0.98 |
chr1 | 187597671 | 187603699 | chr1:187597671-187603699:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.93 |
0.79 |
0.86 |
0.85 |
0.81 |
0.75 |
0.94 |
0.95 |
0.85 |
0.96 |
0.98 |
chr1 | 193717837 | 193723892 | chr1:193717837-193723892:-:L1HS:REF | L1HS | REF | full-length | — | 0.07 |
0.93 |
0.97 |
0.94 |
0.09 |
0.95 |
0.72 |
0.9 |
0.94 |
0.97 |
0.94 |
0.91 |
chr1 | 196219370 | 196225402 | chr1:196219370-196225402:-:L1HS:REF | L1HS | REF | full-length | KCNT2 | 0.32 |
0.62 |
0.87 |
0.84 |
0.06 |
0.91 |
0.86 |
0.96 |
0.98 |
0.89 |
0.97 |
0.98 |
chr1 | 197707714 | 197713746 | chr1:197707714-197713746:+:L1HS:REF | L1HS | REF | full-length | DENND1B | 0.96 |
0.97 |
0.98 |
0.96 |
0.08 |
0.96 |
0.99 |
0.93 |
0.89 |
0.96 |
0.98 |
0.98 |
chr1 | 197802331 | 197803141 | chr1:197802331-197803141:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.69 |
0.97 |
0.98 |
0.91 |
0.82 |
0.95 |
0.32 |
0.97 |
0.95 |
0.95 |
0.97 |
0.97 |
chr1 | 209913771 | 209919823 | chr1:209913771-209919823:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.88 |
0.97 |
0.86 |
0.03 |
0.96 |
0.85 |
0.87 |
0.92 |
0.86 |
0.94 |
0.95 |
chr1 | 216485645 | 216487614 | chr1:216485645-216487614:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.53 |
0.91 |
0.69 |
0.33 |
0.63 |
0.77 |
0.7 |
— | 0.81 |
0.67 |
0.97 |
chr1 | 218009227 | 218015252 | chr1:218009227-218015252:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.69 |
0.1 |
0.83 |
— | 0.91 |
— | — | 0.94 |
0.98 |
chr1 | 220115673 | 220115675 | chr1:220115673-220115675:-:L1HS:NONREF | L1HS | KNR | — | IARS2 | — | — | — | — | — | — | 0.98 |
— | — | — | — | — |
chr1 | 220245155 | 220246008 | chr1:220245155-220246008:+:L1HS:REF | L1HS | REF | 3prime-truncated | RAB3GAP2 | 0.97 |
0.99 |
0.98 |
0.98 |
0.07 |
0.99 |
0.99 |
0.98 |
0.78 |
0.98 |
0.99 |
0.94 |
chr1 | 222405767 | 222405769 | chr1:222405767-222405769:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | 0.94 |
— | — | — | — | — |
chr1 | 237019467 | 237025494 | chr1:237019467-237025494:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.62 |
0.93 |
0.62 |
0.83 |
0.79 |
0.8 |
0.82 |
0.89 |
0.78 |
0.78 |
0.86 |
chr1 | 237075264 | 237081293 | chr1:237075264-237081293:+:L1HS:REF | L1HS | REF | full-length | RYR2 | 0.02 |
0.49 |
0.97 |
0.78 |
0.1 |
0.85 |
0.84 |
0.9 |
0.86 |
0.88 |
0.85 |
0.92 |
chr1 | 239623498 | 239629523 | chr1:239623498-239629523:-:L1HS:REF | L1HS | REF | full-length | CHRM3 | 0.02 |
0.79 |
0.89 |
0.54 |
0.05 |
0.71 |
0.63 |
0.82 |
0.85 |
0.68 |
0.72 |
0.87 |
chr1 | 242148274 | 242148276 | chr1:242148274-242148276:+:L1HS:NONREF | L1HS | KNR | — | PLD5 | — | — | — | — | — | — | — | — | 0.79 |
— | — | — |
chr1 | 247621327 | 247621329 | chr1:247621327-247621329:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.65 |
— |
chr1 | 247687173 | 247693204 | chr1:247687173-247693204:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.01 |
— | 0.71 |
— | — | — | — | — |
chr2 | 11000000 | 11002136 | chr2:11000000-11002136:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.07 |
0.96 |
0.96 |
0.7 |
0.65 |
0.9 |
0.82 |
0.96 |
0.88 |
0.89 |
0.96 |
0.95 |
chr2 | 16593725 | 16599758 | chr2:16593725-16599758:-:L1HS:REF | L1HS | REF | full-length | FAM49A | 0.04 |
0.96 |
0.94 |
0.71 |
0.29 |
0.87 |
0.89 |
0.93 |
0.94 |
0.85 |
0.88 |
0.82 |
chr2 | 22968126 | 22968128 | chr2:22968126-22968128:-:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | 0.93 |
— | 0.71 |
0.8 |
0.82 |
— | — | 0.69 |
0.84 |
— |
chr2 | 35654287 | 35654294 | chr2:35654287-35654294:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.74 |
0.29 |
— | 0.79 |
0.75 |
— | — | — | — |