Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 86000000 | 86005073 | chr6:86000000-86005073:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.06 |
0.73 |
0.91 |
0.83 |
0.14 |
0.88 |
0.69 |
— | — | 0.43 |
0.79 |
0.96 |
chr6 | 93865738 | 93871783 | chr6:93865738-93871783:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.78 |
0.89 |
0.88 |
0.21 |
0.68 |
0.79 |
0.8 |
0.88 |
0.75 |
0.75 |
0.82 |
chr6 | 94197995 | 94204060 | chr6:94197995-94204060:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.73 |
0.88 |
0.8 |
0.08 |
0.84 |
0.79 |
0.9 |
0.96 |
0.85 |
0.88 |
0.99 |
chr6 | 98703059 | 98708329 | chr6:98703059-98708329:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.81 |
0.96 |
0.76 |
0.15 |
0.82 |
0.85 |
0.84 |
0.94 |
0.36 |
0.79 |
0.97 |
chr6 | 102398209 | 102398211 | chr6:102398209-102398211:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.85 |
— | — | — | — | — | 0.99 |
chr6 | 112703745 | 112709778 | chr6:112703745-112709778:+:L1HS:REF | L1HS | REF | full-length | — | 0.28 |
0.77 |
0.91 |
0.61 |
0.11 |
0.87 |
0.5 |
0.9 |
0.89 |
0.96 |
0.94 |
0.91 |
chr6 | 117102131 | 117108163 | chr6:117102131-117108163:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.76 |
0.86 |
0.77 |
0.42 |
0.73 |
0.88 |
— | 0.95 |
0.82 |
0.81 |
0.98 |
chr6 | 121162716 | 121168725 | chr6:121162716-121168725:+:L1HS:REF | L1HS | REF | full-length | TBC1D32 | 0.22 |
0.98 |
0.91 |
0.93 |
0.11 |
0.95 |
0.82 |
0.93 |
0.98 |
0.96 |
0.97 |
0.94 |
chr6 | 123532791 | 123532793 | chr6:123532791-123532793:-:L1HS:NONREF | L1HS | KNR | — | TRDN | 0.16 |
0.98 |
0.9 |
— | — | — | — | — | — | — | — | — |
chr6 | 128998385 | 129000000 | chr6:128998385-129000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | LAMA2 | 0.09 |
0.89 |
— | — | 0.38 |
0.98 |
0.8 |
0.95 |
0.95 |
0.77 |
0.97 |
0.99 |
chr6 | 133020691 | 133026746 | chr6:133020691-133026746:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
— | — | 0.1 |
0.82 |
0.91 |
— | 0.96 |
— | — | 0.9 |
chr6 | 142128962 | 142128964 | chr6:142128962-142128964:-:L1HS:NONREF | L1HS | KNR | — | NMBR | 0.01 |
0.92 |
0.54 |
— | 0.08 |
0.77 |
— | 0.85 |
— | 0.01 |
0.91 |
0.98 |
chr6 | 147842450 | 147842453 | chr6:147842450-147842453:+:L1HS:NONREF | L1HS | KNR | — | — | 0.87 |
— | 0.96 |
— | — | — | — | — | — | — | — | 0.98 |
chr6 | 152712429 | 152712656 | chr6:152712429-152712656:-:L1HS:REF | L1HS | REF | 3prime-truncated | MYCT1 | — | 0.93 |
— | — | 0.94 |
0.86 |
0.57 |
0.96 |
— | — | 0.94 |
— |
chr6 | 156034135 | 156040165 | chr6:156034135-156040165:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.75 |
0.69 |
0.43 |
0.87 |
0.76 |
0.76 |
0.82 |
0.95 |
0.77 |
0.86 |
0.74 |
chr6 | 156324980 | 156331010 | chr6:156324980-156331010:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.72 |
0.28 |
0.87 |
0.8 |
0.85 |
0.96 |
0.92 |
0.84 |
0.92 |
chr6 | 157547703 | 157547705 | chr6:157547703-157547705:-:L1HS:NONREF | L1HS | KNR | — | ZDHHC14 | 0.96 |
0.96 |
— | 0.96 |
0.17 |
0.96 |
0.98 |
0.94 |
0.9 |
— | 0.93 |
0.98 |
chr7 | 7465092 | 7471120 | chr7:7465092-7471120:+:L1HS:REF | L1HS | REF | full-length | COL28A1 | 0.33 |
0.96 |
0.94 |
0.93 |
0.05 |
0.96 |
0.91 |
0.92 |
0.96 |
0.9 |
0.97 |
0.92 |
chr7 | 7979395 | 7979397 | chr7:7979395-7979397:+:L1HS:NONREF | L1HS | KNR | — | GLCCI1 | — | — | 0.84 |
— | — | — | — | — | — | — | — | — |
chr7 | 8351723 | 8353975 | chr7:8351723-8353975:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC100505938 | 0.32 |
0.02 |
0.86 |
0.77 |
0.04 |
0.77 |
0.85 |
0.75 |
0.94 |
0.95 |
0.79 |
0.98 |
chr7 | 8847084 | 8847086 | chr7:8847084-8847086:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.8 |
— | — | 0.78 |
— | 0.85 |
— | 0.58 |
0.85 |
— |
chr7 | 12497211 | 12500000 | chr7:12497211-12500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC102725191 | 0.01 |
0.07 |
0.78 |
0.01 |
0.03 |
0.84 |
0.01 |
0.87 |
0.88 |
0.01 |
0.87 |
0.6 |
chr7 | 25041860 | 25047891 | chr7:25041860-25047891:-:L1HS:REF | L1HS | REF | full-length | — | 0.27 |
0.96 |
0.97 |
0.92 |
0.04 |
0.93 |
0.92 |
0.96 |
0.86 |
0.49 |
0.98 |
0.98 |
chr7 | 30439242 | 30445274 | chr7:30439242-30445274:+:L1HS:REF | L1HS | REF | full-length | NOD1 | 0.9 |
0.96 |
0.99 |
0.96 |
0.15 |
0.95 |
0.95 |
0.92 |
0.82 |
0.97 |
0.94 |
0.95 |
chr7 | 49680245 | 49686300 | chr7:49680245-49686300:-:L1HS:REF | L1HS | REF | full-length | — | 0.18 |
0.85 |
0.94 |
0.72 |
0.14 |
0.91 |
0.85 |
0.83 |
0.93 |
0.8 |
0.85 |
0.93 |
chr7 | 53584807 | 53584809 | chr7:53584807-53584809:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.95 |
— | — | 0.36 |
0.85 |
— | — | — | — | — | — |
chr7 | 57539590 | 57540834 | chr7:57539590-57540834:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.46 |
0.19 |
0.23 |
0.77 |
0.63 |
0.28 |
0.7 |
0.83 |
0.07 |
0.66 |
0.55 |
chr7 | 63148831 | 63154859 | chr7:63148831-63154859:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.65 |
0.62 |
0.72 |
0.25 |
0.46 |
0.6 |
0.8 |
0.77 |
0.39 |
0.75 |
0.83 |
chr7 | 66286853 | 66292884 | chr7:66286853-66292884:-:L1HS:REF | L1HS | REF | full-length | TPST1 | 0.76 |
0.76 |
0.97 |
0.91 |
0.08 |
0.94 |
0.97 |
0.94 |
0.75 |
0.06 |
0.98 |
0.98 |
chr7 | 67126183 | 67126185 | chr7:67126183-67126185:-:L1HS:NONREF | L1HS | KNR | — | TYW1 | — | — | — | 0.89 |
— | — | — | — | — | — | — | 0.86 |
chr7 | 70197328 | 70203357 | chr7:70197328-70203357:+:L1HS:REF | L1HS | REF | full-length | AUTS2 | 0.01 |
0.94 |
0.96 |
0.65 |
0.12 |
0.9 |
0.53 |
0.9 |
0.94 |
0.96 |
0.85 |
0.81 |
chr7 | 91173443 | 91179517 | chr7:91173443-91179517:+:L1HS:REF | L1HS | REF | full-length | CDK14 | 0.01 |
— | 0.94 |
— | — | 0.98 |
0.73 |
— | — | 0.95 |
1.0 |
0.9 |
chr7 | 93787624 | 93793679 | chr7:93787624-93793679:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
— | 0.89 |
— | 0.66 |
0.87 |
0.88 |
0.89 |
— | 0.97 |
0.91 |
0.98 |
chr7 | 96846650 | 96852680 | chr7:96846650-96852680:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.97 |
— | — | — | — | 0.94 |
0.78 |
— | — | — | — |
chr7 | 97613656 | 97619688 | chr7:97613656-97619688:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.75 |
0.91 |
0.62 |
0.19 |
0.74 |
0.82 |
0.79 |
0.92 |
0.95 |
0.78 |
0.87 |
chr7 | 108188818 | 108188820 | chr7:108188818-108188820:+:L1HS:NONREF | L1HS | KNR | — | NRCAM | 0.85 |
0.98 |
0.97 |
0.93 |
0.26 |
0.9 |
0.86 |
— | 0.9 |
0.97 |
0.95 |
0.98 |
chr7 | 110707004 | 110713024 | chr7:110707004-110713024:-:L1HS:REF | L1HS | REF | full-length | IMMP2L | 0.69 |
0.96 |
0.92 |
0.93 |
0.25 |
0.94 |
0.93 |
0.95 |
0.97 |
0.56 |
0.96 |
0.98 |
chr7 | 111243515 | 111249546 | chr7:111243515-111249546:-:L1HS:REF | L1HS | REF | full-length | IMMP2L | 0.93 |
0.97 |
0.96 |
0.95 |
0.22 |
0.97 |
0.98 |
0.97 |
0.94 |
0.93 |
0.97 |
0.98 |
chr7 | 111963193 | 111969223 | chr7:111963193-111969223:+:L1HS:REF | L1HS | REF | full-length | DOCK4 | 0.03 |
0.93 |
0.97 |
0.96 |
0.14 |
0.89 |
0.98 |
0.95 |
0.88 |
0.94 |
0.98 |
0.99 |
chr7 | 113776122 | 113782152 | chr7:113776122-113782152:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.73 |
— | 0.82 |
0.74 |
0.68 |
— | 0.7 |
0.8 |
0.97 |
chr7 | 125179570 | 125181978 | chr7:125179570-125181978:-:L1HS:REF | L1HS | REF | 3prime-truncated | LOC101928283 | 0.02 |
0.34 |
0.81 |
0.89 |
0.06 |
0.76 |
0.76 |
0.78 |
0.93 |
0.67 |
0.71 |
0.97 |
chr7 | 125964725 | 125964727 | chr7:125964725-125964727:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.78 |
— | — | — | — | — | — | — | — |
chr7 | 131182660 | 131182662 | chr7:131182660-131182662:-:L1HS:NONREF | L1HS | KNR | — | MKLN1 | — | — | — | — | — | — | — | 0.9 |
— | — | — | — |
chr7 | 140709367 | 140709369 | chr7:140709367-140709369:-:L1HS:NONREF | L1HS | UNKNR | — | NDUFB2 | — | — | — | 0.98 |
— | — | — | — | — | — | — | — |
chr7 | 141062014 | 141068042 | chr7:141062014-141068042:-:L1HS:REF | L1HS | REF | full-length | TMEM178B | 0.2 |
0.96 |
0.96 |
0.67 |
0.12 |
0.76 |
0.83 |
0.75 |
0.89 |
0.89 |
0.85 |
0.88 |
chr7 | 141920659 | 141926712 | chr7:141920659-141926712:-:L1HS:REF | L1HS | REF | full-length | CLEC5A | 0.16 |
0.89 |
0.92 |
0.68 |
0.26 |
0.59 |
0.57 |
0.73 |
0.7 |
0.62 |
0.79 |
0.92 |
chr7 | 143121570 | 143121575 | chr7:143121570-143121575:+:L1HS:NONREF | L1HS | KNR | — | TCAF2 | 0.01 |
— | — | — | — | — | — | 0.87 |
— | — | — | — |
chr7 | 147842591 | 147848623 | chr7:147842591-147848623:-:L1HS:REF | L1HS | REF | full-length | CNTNAP2 | 0.01 |
0.65 |
0.76 |
0.51 |
0.23 |
0.74 |
0.58 |
0.79 |
0.92 |
0.63 |
0.7 |
0.83 |
chr7 | 150597094 | 150602628 | chr7:150597094-150602628:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.44 |
0.37 |
0.12 |
0.83 |
0.52 |
0.05 |
0.4 |
0.79 |
0.05 |
0.44 |
0.43 |
chr8 | 8470859 | 8476906 | chr8:8470859-8476906:+:L1HS:REF | L1HS | REF | full-length | — | 0.31 |
0.91 |
— | 0.88 |
0.29 |
0.86 |
0.91 |
0.86 |
0.96 |
0.94 |
— | 0.91 |