Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10 | 98782941 | 98788971 | chr10:98782941-98788971:-:L1HS:REF | L1HS | REF | full-length | HPSE2 | 0.95 |
0.95 |
0.92 |
0.76 |
0.13 |
0.9 |
0.86 |
0.9 |
0.88 |
0.85 |
0.88 |
0.86 |
chr10 | 105377346 | 105383377 | chr10:105377346-105383377:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.15 |
0.89 |
0.65 |
0.12 |
— | 0.88 |
0.84 |
0.92 |
0.6 |
0.79 |
0.89 |
chr10 | 105775520 | 105781551 | chr10:105775520-105781551:-:L1HS:REF | L1HS | REF | full-length | LINC02627 | 0.02 |
0.67 |
0.89 |
0.58 |
0.24 |
0.81 |
0.81 |
0.84 |
0.92 |
0.55 |
0.82 |
0.89 |
chr10 | 108310130 | 108316139 | chr10:108310130-108316139:-:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.83 |
0.88 |
0.82 |
0.1 |
0.72 |
0.95 |
0.75 |
0.4 |
0.55 |
0.85 |
0.85 |
chr10 | 112237295 | 112237297 | chr10:112237295-112237297:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | 0.08 |
— | — |
chr10 | 120902678 | 120902680 | chr10:120902678-120902680:+:L1HS:NONREF | L1HS | KNR | — | WDR11 | — | — | — | — | — | — | — | 0.92 |
— | — | — | — |
chr10 | 122695714 | 122695716 | chr10:122695714-122695716:+:L1HS:NONREF | L1HS | KNR | — | C10orf120 | — | — | — | — | 0.08 |
0.85 |
0.95 |
0.86 |
0.91 |
— | — | — |
chr10 | 128826794 | 128826796 | chr10:128826794-128826796:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.78 |
— | — | — | — | — | — | 0.5 |
— | — |
chr10 | 129670136 | 129670138 | chr10:129670136-129670138:-:L1HS:NONREF | L1HS | KNR | — | MGMT | — | — | — | 0.93 |
— | — | — | — | — | — | — | — |
chr11 | 5914493 | 5918448 | chr11:5914493-5918448:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.32 |
0.57 |
0.16 |
0.74 |
— | 0.46 |
0.37 |
0.75 |
0.26 |
0.45 |
— |
chr11 | 24327951 | 24334001 | chr11:24327951-24334001:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.77 |
0.92 |
0.96 |
0.07 |
0.87 |
0.93 |
0.96 |
0.98 |
0.39 |
0.96 |
0.98 |
chr11 | 25500009 | 25502139 | chr11:25500009-25502139:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.07 |
0.77 |
0.73 |
0.79 |
0.35 |
0.72 |
0.67 |
0.8 |
0.87 |
0.5 |
0.75 |
0.87 |
chr11 | 31315654 | 31321680 | chr11:31315654-31321680:-:L1HS:REF | L1HS | REF | full-length | DCDC1 | 0.02 |
0.93 |
0.97 |
0.82 |
0.1 |
0.79 |
0.86 |
0.88 |
0.96 |
0.96 |
0.82 |
0.98 |
chr11 | 36551606 | 36557636 | chr11:36551606-36557636:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.94 |
0.81 |
0.09 |
0.88 |
0.93 |
0.88 |
0.89 |
0.76 |
0.87 |
0.98 |
chr11 | 48847694 | 48853724 | chr11:48847694-48853724:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.77 |
0.8 |
0.58 |
0.36 |
0.75 |
0.54 |
0.74 |
0.83 |
0.47 |
0.74 |
0.85 |
chr11 | 54849946 | 54851079 | chr11:54849946-54851079:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.35 |
0.36 |
0.22 |
0.8 |
0.43 |
0.12 |
0.58 |
0.72 |
0.19 |
0.58 |
0.61 |
chr11 | 56103282 | 56103287 | chr11:56103282-56103287:+:L1HS:NONREF | L1HS | KNR | — | OR8H2 | — | — | 0.63 |
— | — | — | — | — | — | 0.39 |
— | — |
chr11 | 58000000 | 58000187 | chr11:58000000-58000187:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.85 |
0.76 |
— | 0.83 |
— | 0.95 |
— | 0.92 |
0.47 |
0.89 |
0.81 |
chr11 | 78677772 | 78683802 | chr11:78677772-78683802:-:L1HS:REF | L1HS | REF | full-length | TENM4 | 0.03 |
0.97 |
0.96 |
0.8 |
0.16 |
0.91 |
0.85 |
0.95 |
0.65 |
0.95 |
0.94 |
0.9 |
chr11 | 82155865 | 82161891 | chr11:82155865-82161891:+:L1HS:REF | L1HS | REF | full-length | MIR4300HG | 0.02 |
0.84 |
0.88 |
0.7 |
0.09 |
0.84 |
0.84 |
0.85 |
0.95 |
— | 0.85 |
0.88 |
chr11 | 83941305 | 83941307 | chr11:83941305-83941307:-:L1HS:NONREF | L1HS | KNR | — | DLG2 | — | — | — | — | 0.89 |
0.83 |
— | — | — | — | 0.86 |
— |
chr11 | 85324758 | 85330821 | chr11:85324758-85330821:+:L1HS:REF | L1HS | REF | full-length | DLG2 | 0.02 |
0.98 |
0.92 |
0.72 |
0.23 |
0.83 |
0.72 |
0.82 |
0.96 |
0.56 |
0.85 |
0.93 |
chr11 | 87340031 | 87346061 | chr11:87340031-87346061:-:L1HS:REF | L1HS | REF | full-length | — | 0.66 |
0.97 |
0.98 |
0.87 |
0.4 |
0.94 |
0.94 |
0.94 |
0.95 |
0.95 |
0.96 |
0.98 |
chr11 | 87855849 | 87855851 | chr11:87855849-87855851:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.91 |
— | — | — | — | — | — | 0.86 |
— | — |
chr11 | 90400067 | 90406098 | chr11:90400067-90406098:-:L1HS:REF | L1HS | REF | full-length | DISC1FP1 | 0.03 |
0.86 |
0.88 |
0.57 |
0.1 |
0.79 |
0.92 |
0.78 |
0.93 |
0.83 |
0.79 |
0.99 |
chr11 | 90966271 | 90972302 | chr11:90966271-90972302:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.78 |
0.72 |
0.62 |
0.76 |
0.66 |
0.85 |
0.96 |
0.63 |
0.83 |
0.95 |
chr11 | 93136638 | 93142673 | chr11:93136638-93142673:+:L1HS:REF | L1HS | REF | full-length | SLC36A4 | — | — | 0.87 |
0.97 |
— | 0.89 |
— | 0.97 |
0.97 |
— | — | 0.9 |
chr11 | 93420986 | 93427031 | chr11:93420986-93427031:+:L1HS:REF | L1HS | REF | full-length | DEUP1 | 0.17 |
— | — | — | — | — | — | — | 0.08 |
0.16 |
0.4 |
— |
chr11 | 95436216 | 95442246 | chr11:95436216-95442246:+:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.9 |
0.96 |
0.81 |
0.7 |
0.9 |
0.8 |
0.9 |
0.96 |
0.82 |
0.91 |
0.95 |
chr11 | 108685166 | 108685556 | chr11:108685166-108685556:-:L1HS:REF | L1HS | REF | 3prime-truncated | DDX10 | 0.97 |
0.97 |
0.97 |
0.98 |
0.96 |
0.98 |
0.98 |
0.95 |
0.94 |
0.97 |
0.99 |
0.99 |
chr11 | 109177494 | 109183526 | chr11:109177494-109183526:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.79 |
0.81 |
0.62 |
0.32 |
0.74 |
0.6 |
0.76 |
0.87 |
0.5 |
0.75 |
0.91 |
chr11 | 110507146 | 110507155 | chr11:110507146-110507155:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.82 |
— | — | — | — | 0.79 |
— | — | — | — | — |
chr11 | 115024803 | 115024805 | chr11:115024803-115024805:+:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | — | — | — | — | 0.9 |
— | — | — | 0.81 |
— |
chr11 | 125536609 | 125542640 | chr11:125536609-125542640:+:L1HS:REF | L1HS | REF | full-length | — | 0.94 |
0.07 |
0.95 |
0.58 |
0.14 |
0.74 |
0.9 |
0.87 |
0.87 |
0.91 |
0.85 |
0.9 |
chr12 | 3500000 | 3505228 | chr12:3500000-3505228:-:L1HS:REF | L1HS | REF | 3prime-truncated | PRMT8 | 0.01 |
0.95 |
0.95 |
0.64 |
0.17 |
0.77 |
0.83 |
0.77 |
0.82 |
0.91 |
0.82 |
0.95 |
chr12 | 28073477 | 28073480 | chr12:28073477-28073480:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.81 |
0.82 |
0.72 |
0.12 |
— | 0.63 |
0.81 |
0.81 |
0.77 |
0.82 |
0.83 |
chr12 | 33172858 | 33172860 | chr12:33172858-33172860:-:L1HS:NONREF | L1HS | KNR | — | — | 0.14 |
— | — | — | — | — | — | — | — | — | — | — |
chr12 | 33864388 | 33864390 | chr12:33864388-33864390:-:L1HS:NONREF | L1HS | KNR | — | — | 0.68 |
0.98 |
0.88 |
— | — | 0.86 |
0.89 |
— | — | 0.61 |
0.79 |
0.88 |
chr12 | 38799646 | 38805673 | chr12:38799646-38805673:+:L1HS:REF | L1HS | REF | full-length | CPNE8 | 0.12 |
0.52 |
0.74 |
0.84 |
0.09 |
0.76 |
0.75 |
0.8 |
0.83 |
0.63 |
0.61 |
0.75 |
chr12 | 44108220 | 44114234 | chr12:44108220-44114234:-:L1HS:REF | L1HS | REF | full-length | TMEM117 | 0.05 |
0.97 |
0.94 |
0.88 |
0.05 |
0.97 |
0.98 |
0.97 |
0.95 |
0.9 |
0.94 |
0.97 |
chr12 | 45701234 | 45701236 | chr12:45701234-45701236:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.97 |
— | — | — | — | — | 0.98 |
— |
chr12 | 51562631 | 51568657 | chr12:51562631-51568657:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.27 |
0.97 |
0.75 |
0.06 |
0.92 |
0.91 |
0.91 |
0.87 |
0.5 |
0.9 |
0.14 |
chr12 | 54788573 | 54794627 | chr12:54788573-54794627:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.9 |
0.84 |
0.6 |
0.33 |
0.75 |
0.8 |
0.83 |
0.88 |
0.78 |
0.68 |
0.86 |
chr12 | 55096256 | 55102283 | chr12:55096256-55102283:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.84 |
0.83 |
0.66 |
0.14 |
0.77 |
0.9 |
0.81 |
0.89 |
0.66 |
0.77 |
0.9 |
chr12 | 69773410 | 69779441 | chr12:69773410-69779441:-:L1HS:REF | L1HS | REF | full-length | RAB3IP | 0.45 |
0.63 |
0.93 |
0.9 |
0.02 |
0.85 |
0.98 |
0.91 |
0.85 |
0.92 |
0.9 |
0.98 |
chr12 | 70660206 | 70660208 | chr12:70660206-70660208:+:L1HS:NONREF | L1HS | KNR | — | PTPRR | — | — | — | — | — | — | — | — | — | — | 0.89 |
— |
chr12 | 73283667 | 73289668 | chr12:73283667-73289668:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.69 |
0.68 |
0.62 |
0.35 |
0.68 |
0.77 |
0.67 |
0.89 |
0.84 |
0.74 |
0.87 |
chr12 | 74874868 | 74880901 | chr12:74874868-74880901:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.98 |
0.92 |
0.92 |
0.05 |
0.83 |
0.42 |
0.64 |
0.96 |
0.88 |
0.9 |
0.98 |
chr12 | 96518775 | 96518777 | chr12:96518775-96518777:-:L1HS:NONREF | L1HS | KNR | — | CFAP54 | — | 0.99 |
— | — | — | — | — | — | — | — | — | — |
chr12 | 101146043 | 101152064 | chr12:101146043-101152064:+:L1HS:REF | L1HS | REF | full-length | SLC5A8 | 0.01 |
0.95 |
0.95 |
0.76 |
0.04 |
0.84 |
0.87 |
0.87 |
0.78 |
0.79 |
0.94 |
0.97 |