Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14 | 90206773 | 90212804 | chr14:90206773-90212804:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.14 |
0.96 |
0.94 |
0.77 |
0.92 |
0.79 |
0.91 |
0.89 |
0.94 |
0.72 |
0.89 |
0.97 |
chr14 | 91430864 | 91436893 | chr14:91430864-91436893:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.82 |
0.84 |
0.89 |
0.93 |
0.65 |
0.85 |
0.86 |
0.88 |
0.93 |
0.87 |
0.89 |
0.91 |
chr14 | 91640244 | 91646233 | chr14:91640244-91646233:-:L1PA2:REF | L1PA2 | REF | full-length | CATSPERB | 0.73 |
0.94 |
0.9 |
0.86 |
0.12 |
0.83 |
0.87 |
0.78 |
0.74 |
0.88 |
0.85 |
0.95 |
chr14 | 92852827 | 92858975 | chr14:92852827-92858975:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.51 |
0.89 |
0.88 |
0.87 |
0.92 |
0.84 |
0.96 |
0.72 |
0.92 |
0.78 |
0.85 |
0.95 |
chr14 | 93413032 | 93419170 | chr14:93413032-93419170:-:L1PA3:REF | L1PA3 | REF | full-length | UNC79 | 0.01 |
0.91 |
0.94 |
0.61 |
0.91 |
0.84 |
0.83 |
0.87 |
0.93 |
0.88 |
0.83 |
0.88 |
chr14 | 101266199 | 101272227 | chr14:101266199-101272227:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.91 |
0.9 |
0.66 |
0.76 |
0.76 |
0.86 |
0.76 |
0.9 |
0.69 |
0.75 |
0.8 |
chr14 | 105956123 | 105962267 | chr14:105956123-105962267:-:L1PA4:REF | L1PA4 | REF | full-length | ADAM6 | — | — | 0.0 |
— | — | 0.21 |
0.0 |
0.0 |
— | 0.0 |
0.0 |
0.0 |
chr15 | 17013608 | 17019737 | chr15:17013608-17019737:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.83 |
0.86 |
0.26 |
0.92 |
0.33 |
0.04 |
0.44 |
0.91 |
0.61 |
0.62 |
0.67 |
chr15 | 19948218 | 19954369 | chr15:19948218-19954369:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.28 |
0.29 |
0.09 |
0.68 |
0.58 |
0.5 |
0.57 |
0.85 |
0.11 |
0.57 |
0.43 |
chr15 | 20311030 | 20317051 | chr15:20311030-20317051:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.28 |
0.66 |
0.69 |
0.66 |
0.86 |
0.72 |
0.83 |
0.76 |
0.9 |
0.54 |
0.77 |
0.89 |
chr15 | 23714069 | 23720096 | chr15:23714069-23720096:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.07 |
0.62 |
0.5 |
0.08 |
0.73 |
0.02 |
0.66 |
0.74 |
0.15 |
0.7 |
0.67 |
chr15 | 26531055 | 26537615 | chr15:26531055-26537615:+:L1PA7:REF | L1PA7 | REF | full-length | GABRB3 | 0.01 |
0.43 |
0.64 |
0.11 |
0.75 |
0.46 |
0.04 |
0.48 |
0.79 |
0.01 |
0.48 |
0.25 |
chr15 | 27187726 | 27193872 | chr15:27187726-27193872:-:L1PA3:REF | L1PA3 | REF | full-length | GABRG3 | 0.63 |
0.28 |
0.61 |
0.29 |
0.81 |
0.68 |
0.13 |
0.77 |
0.93 |
0.26 |
0.64 |
0.63 |
chr15 | 30240360 | 30246398 | chr15:30240360-30246398:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.74 |
0.9 |
0.48 |
0.91 |
0.77 |
0.97 |
0.83 |
0.96 |
0.85 |
0.74 |
0.91 |
chr15 | 30775177 | 30781390 | chr15:30775177-30781390:+:L1PA4:REF | L1PA4 | REF | full-length | LOC100288637 | 0.98 |
0.97 |
0.98 |
0.98 |
0.88 |
0.99 |
0.97 |
0.99 |
0.99 |
0.98 |
0.82 |
0.98 |
chr15 | 30848621 | 30854753 | chr15:30848621-30854753:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.87 |
0.86 |
0.85 |
0.97 |
0.83 |
0.53 |
0.9 |
0.98 |
0.85 |
0.82 |
0.95 |
chr15 | 31617776 | 31623903 | chr15:31617776-31623903:-:L1PA5:REF | L1PA5 | REF | full-length | OTUD7A | 0.04 |
0.94 |
0.79 |
0.7 |
0.93 |
0.74 |
0.53 |
0.78 |
0.94 |
0.74 |
0.73 |
0.94 |
chr15 | 32045683 | 32051786 | chr15:32045683-32051786:-:L1PA3:REF | L1PA3 | REF | full-length | LOC100288637 | 0.02 |
0.92 |
0.97 |
0.61 |
0.89 |
0.76 |
0.76 |
0.8 |
0.94 |
0.96 |
0.75 |
0.96 |
chr15 | 32139925 | 32146049 | chr15:32139925-32146049:-:L1PA6:REF | L1PA6 | REF | full-length | LOC100288637 | 0.01 |
0.56 |
0.87 |
0.07 |
0.86 |
0.48 |
0.46 |
0.53 |
0.95 |
0.94 |
0.41 |
0.94 |
chr15 | 32292269 | 32298310 | chr15:32292269-32298310:+:L1PA3:REF | L1PA3 | REF | full-length | LOC100288637 | 0.02 |
0.0 |
0.97 |
0.55 |
0.76 |
0.71 |
0.97 |
0.77 |
— | 0.95 |
0.73 |
0.9 |
chr15 | 33739636 | 33739638 | chr15:33739636-33739638:-:L1HS:NONREF | L1HS | KNR | — | RYR3 | — | 0.85 |
— | — | — | — | — | — | 0.81 |
— | — | — |
chr15 | 33995744 | 33997047 | chr15:33995744-33997047:+:L1P2:REF | L1P2 | REF | 3prime-truncated | AVEN | 0.04 |
0.96 |
0.99 |
0.97 |
0.91 |
0.97 |
0.97 |
0.98 |
0.99 |
0.94 |
0.97 |
0.95 |
chr15 | 35385846 | 35391984 | chr15:35385846-35391984:-:L1PA4:REF | L1PA4 | REF | full-length | DPH6 | 0.64 |
0.85 |
0.97 |
0.96 |
0.91 |
0.91 |
0.97 |
0.97 |
0.96 |
0.92 |
0.98 |
0.98 |
chr15 | 36195372 | 36201389 | chr15:36195372-36201389:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.24 |
0.83 |
0.94 |
0.75 |
0.14 |
0.96 |
0.79 |
0.93 |
0.98 |
0.94 |
0.97 |
0.98 |
chr15 | 37319965 | 37325741 | chr15:37319965-37325741:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.16 |
0.48 |
0.11 |
0.81 |
0.45 |
0.15 |
0.48 |
0.86 |
0.37 |
0.43 |
0.87 |
chr15 | 37399471 | 37405476 | chr15:37399471-37405476:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.62 |
0.82 |
0.44 |
0.66 |
0.73 |
0.67 |
0.8 |
0.88 |
0.86 |
0.83 |
0.92 |
chr15 | 37427156 | 37433181 | chr15:37427156-37433181:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.6 |
0.86 |
0.66 |
0.16 |
0.77 |
0.73 |
0.88 |
0.87 |
0.89 |
0.83 |
0.93 |
chr15 | 38119420 | 38125490 | chr15:38119420-38125490:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.8 |
— |
chr15 | 38136665 | 38142840 | chr15:38136665-38142840:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.94 |
0.68 |
0.88 |
0.89 |
0.58 |
— | — | 0.81 |
0.95 |
0.93 |
chr15 | 38567626 | 38574032 | chr15:38567626-38574032:-:L1PA7:REF | L1PA7 | REF | full-length | RASGRP1 | 0.02 |
0.94 |
0.87 |
0.15 |
0.84 |
0.65 |
0.09 |
0.66 |
0.92 |
0.77 |
0.67 |
0.87 |
chr15 | 38580735 | 38586868 | chr15:38580735-38586868:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.97 |
— |
chr15 | 38773619 | 38779712 | chr15:38773619-38779712:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | 0.86 |
0.91 |
0.03 |
— | — | — | 0.73 |
0.96 |
chr15 | 38782749 | 38788763 | chr15:38782749-38788763:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.94 |
0.91 |
0.78 |
0.88 |
0.94 |
0.72 |
0.94 |
0.94 |
0.68 |
0.96 |
0.94 |
chr15 | 39420570 | 39426588 | chr15:39420570-39426588:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.93 |
0.98 |
0.75 |
0.17 |
0.97 |
0.92 |
0.96 |
0.87 |
0.82 |
0.96 |
0.95 |
chr15 | 42246295 | 42252380 | chr15:42246295-42252380:-:L1PA6:REF | L1PA6 | REF | full-length | TMEM87A | — | — | — | — | — | — | — | — | — | — | 0.16 |
— |
chr15 | 43175700 | 43178014 | chr15:43175700-43178014:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | TMEM62 | 0.98 |
0.98 |
0.98 |
0.99 |
0.92 |
0.99 |
0.97 |
0.99 |
0.99 |
0.91 |
0.91 |
0.98 |
chr15 | 43649975 | 43656002 | chr15:43649975-43656002:+:L1PA3:REF | L1PA3 | REF | full-length | PPIP5K1P1-CATSPER2 | 0.96 |
0.53 |
0.97 |
0.98 |
0.93 |
0.96 |
0.97 |
0.93 |
0.94 |
0.97 |
0.92 |
0.97 |
chr15 | 44252034 | 44258049 | chr15:44252034-44258049:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.6 |
0.91 |
0.12 |
0.83 |
0.1 |
0.56 |
0.52 |
0.66 |
0.35 |
0.03 |
0.85 |
0.91 |
chr15 | 44682790 | 44685327 | chr15:44682790-44685327:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | PATL2 | 0.09 |
0.15 |
0.46 |
0.31 |
0.75 |
0.44 |
0.05 |
0.71 |
0.67 |
0.36 |
0.76 |
0.8 |
chr15 | 44739238 | 44740551 | chr15:44739238-44740551:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | TRIM69 | 0.6 |
0.7 |
0.85 |
0.8 |
0.84 |
0.87 |
0.69 |
0.86 |
0.86 |
0.79 |
0.86 |
0.78 |
chr15 | 46104553 | 46110666 | chr15:46104553-46110666:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.62 |
0.39 |
0.84 |
0.79 |
0.45 |
0.77 |
0.95 |
0.2 |
0.77 |
0.67 |
chr15 | 46536240 | 46542382 | chr15:46536240-46542382:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.12 |
0.77 |
0.44 |
0.86 |
0.78 |
0.58 |
0.75 |
0.94 |
0.5 |
0.67 |
0.76 |
chr15 | 46614311 | 46615469 | chr15:46614311-46615469:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.67 |
0.78 |
0.62 |
0.84 |
0.64 |
0.73 |
0.76 |
0.95 |
0.62 |
0.72 |
0.85 |
chr15 | 47165532 | 47171560 | chr15:47165532-47171560:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.57 |
0.71 |
0.64 |
0.91 |
0.67 |
0.64 |
0.75 |
0.96 |
0.48 |
0.78 |
0.73 |
chr15 | 47215130 | 47215132 | chr15:47215130-47215132:-:L1HS:NONREF | L1HS | KNR | — | SEMA6D | 0.04 |
— | — | 0.8 |
— | 0.85 |
0.79 |
0.93 |
— | — | 0.97 |
0.85 |
chr15 | 49068556 | 49073687 | chr15:49068556-49073687:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.02 |
— | 0.72 |
0.74 |
— | 0.82 |
0.39 |
0.8 |
— | — | 0.82 |
— |
chr15 | 49259578 | 49265724 | chr15:49259578-49265724:-:L1PA3:REF | L1PA3 | REF | full-length | GALK2 | 0.93 |
— | 0.96 |
0.98 |
0.95 |
0.95 |
0.97 |
0.96 |
0.98 |
0.97 |
0.99 |
0.98 |
chr15 | 49354233 | 49360252 | chr15:49354233-49360252:+:L1PA2:REF | L1PA2 | REF | full-length | FAM227B | 0.88 |
0.98 |
0.9 |
0.94 |
0.7 |
0.98 |
0.87 |
0.9 |
0.93 |
0.89 |
0.93 |
0.94 |
chr15 | 49395983 | 49402014 | chr15:49395983-49402014:+:L1PA2:REF | L1PA2 | REF | full-length | FAM227B | 0.04 |
0.86 |
0.95 |
0.97 |
0.09 |
0.95 |
0.48 |
0.98 |
0.49 |
0.32 |
0.98 |
0.97 |
chr15 | 49591887 | 49593319 | chr15:49591887-49593319:-:L1P2:REF | L1P2 | REF | 3prime-truncated | FAM227B | 0.45 |
0.84 |
0.8 |
0.92 |
0.76 |
0.92 |
0.16 |
0.94 |
0.94 |
0.68 |
0.94 |
0.96 |