Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 198017928 | 198024409 | chr2:198017928-198024409:+:L1PA7:REF | L1PA7 | REF | full-length | PLCL1 | — | 0.47 |
0.43 |
— | 0.89 |
0.43 |
0.02 |
0.6 |
0.89 |
0.6 |
0.38 |
0.12 |
chr2 | 198196260 | 198202415 | chr2:198196260-198202415:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.23 |
0.66 |
0.93 |
0.5 |
0.89 |
0.78 |
0.18 |
0.69 |
0.92 |
0.91 |
0.81 |
0.85 |
chr2 | 198684460 | 198690891 | chr2:198684460-198690891:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | 0.8 |
— | — | — | 0.03 |
— | — | — | 0.48 |
— |
chr2 | 198915189 | 198915191 | chr2:198915189-198915191:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.49 |
— | — | — | 0.89 |
— | — | — | — | — | 0.98 |
chr2 | 199028485 | 199034598 | chr2:199028485-199034598:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.79 |
0.85 |
0.56 |
0.88 |
0.76 |
0.59 |
0.73 |
0.95 |
0.89 |
0.67 |
0.93 |
chr2 | 199239608 | 199245731 | chr2:199239608-199245731:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.73 |
0.77 |
0.11 |
0.92 |
0.73 |
0.24 |
0.82 |
1.0 |
0.7 |
0.57 |
0.94 |
chr2 | 200561046 | 200567211 | chr2:200561046-200567211:-:L1PA5:REF | L1PA5 | REF | full-length | SGO2 | 0.91 |
0.97 |
0.96 |
0.98 |
0.88 |
0.99 |
0.97 |
0.99 |
0.96 |
0.93 |
0.98 |
0.99 |
chr2 | 201290544 | 201296670 | chr2:201290544-201296670:+:L1PA4:REF | L1PA4 | REF | full-length | FLACC1 | 0.83 |
0.95 |
0.92 |
0.86 |
0.85 |
0.89 |
0.98 |
0.95 |
0.89 |
0.87 |
0.9 |
0.86 |
chr2 | 201299945 | 201306098 | chr2:201299945-201306098:+:L1PA5:REF | L1PA5 | REF | full-length | FLACC1 | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr2 | 204991072 | 204997106 | chr2:204991072-204997106:-:L1PA2:REF | L1PA2 | REF | full-length | PARD3B | 0.15 |
0.96 |
0.98 |
0.79 |
0.15 |
0.97 |
0.87 |
0.98 |
0.94 |
0.96 |
0.98 |
0.93 |
chr2 | 206894207 | 206900352 | chr2:206894207-206900352:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | 0.77 |
0.74 |
0.06 |
0.89 |
0.66 |
0.14 |
0.73 |
0.9 |
0.58 |
0.54 |
0.99 |
chr2 | 206908035 | 206914052 | chr2:206908035-206914052:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.61 |
0.93 |
0.47 |
0.77 |
0.8 |
0.7 |
0.81 |
0.94 |
0.84 |
0.77 |
0.98 |
chr2 | 207000910 | 207006934 | chr2:207000910-207006934:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.72 |
0.96 |
0.92 |
0.92 |
0.9 |
0.87 |
0.93 |
0.98 |
— | 0.92 |
0.89 |
chr2 | 207344165 | 207350576 | chr2:207344165-207350576:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.86 |
0.94 |
0.95 |
0.88 |
0.95 |
0.92 |
0.53 |
0.99 |
0.93 |
0.94 |
0.97 |
0.96 |
chr2 | 208800640 | 208806791 | chr2:208800640-208806791:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101927960 | 0.9 |
0.93 |
0.64 |
0.39 |
0.6 |
0.63 |
0.79 |
0.71 |
0.93 |
0.42 |
0.67 |
0.98 |
chr2 | 208811621 | 208817648 | chr2:208811621-208817648:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101927960 | 0.64 |
0.43 |
0.57 |
0.14 |
0.15 |
0.41 |
0.34 |
0.54 |
0.82 |
0.12 |
0.41 |
0.86 |
chr2 | 208831567 | 208837733 | chr2:208831567-208837733:+:L1PA4:REF | L1PA4 | REF | full-length | LOC101927960 | 0.81 |
0.93 |
0.61 |
— | 0.92 |
0.73 |
0.68 |
0.69 |
0.95 |
0.44 |
0.7 |
0.93 |
chr2 | 209128529 | 209134554 | chr2:209128529-209134554:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.69 |
0.59 |
0.23 |
0.76 |
0.61 |
0.37 |
0.61 |
0.93 |
— | 0.59 |
0.91 |
chr2 | 209746180 | 209752208 | chr2:209746180-209752208:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.85 |
0.94 |
0.76 |
0.37 |
0.86 |
0.81 |
0.86 |
0.94 |
0.77 |
0.89 |
0.98 |
chr2 | 211219320 | 211225344 | chr2:211219320-211225344:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.98 |
0.9 |
0.96 |
0.77 |
0.6 |
0.58 |
0.62 |
0.95 |
0.75 |
0.67 |
0.98 |
chr2 | 211810973 | 211813182 | chr2:211810973-211813182:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | ERBB4 | — | — | — | — | — | — | — | — | — | — | 0.13 |
— |
chr2 | 211888536 | 211894571 | chr2:211888536-211894571:+:L1PA2:REF | L1PA2 | REF | full-length | ERBB4 | 0.03 |
— | — | — | 0.03 |
0.8 |
0.76 |
— | — | — | 0.9 |
— |
chr2 | 212785128 | 212791268 | chr2:212785128-212791268:+:L1PA4:REF | L1PA4 | REF | full-length | LINC01878 | — | 0.9 |
0.65 |
0.65 |
0.89 |
0.67 |
0.3 |
0.85 |
0.96 |
0.47 |
0.8 |
0.94 |
chr2 | 213353899 | 213359904 | chr2:213353899-213359904:-:L1PA6:REF | L1PA6 | REF | full-length | SPAG16 | 0.0 |
0.89 |
0.64 |
0.27 |
0.82 |
0.72 |
0.84 |
0.67 |
0.95 |
0.46 |
0.67 |
0.97 |
chr2 | 213567231 | 213573262 | chr2:213567231-213573262:-:L1HS:REF | L1HS | REF | full-length | SPAG16 | 0.02 |
— | 0.78 |
— | 0.23 |
0.7 |
0.74 |
0.8 |
— | 0.47 |
0.88 |
— |
chr2 | 214683796 | 214689805 | chr2:214683796-214689805:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
— | 0.02 |
0.59 |
0.02 |
0.09 |
0.01 |
0.16 |
0.11 |
— | 0.33 |
0.91 |
chr2 | 215220243 | 215226331 | chr2:215220243-215226331:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.74 |
0.89 |
0.89 |
0.85 |
0.86 |
0.88 |
0.87 |
0.87 |
0.89 |
0.86 |
0.9 |
0.95 |
chr2 | 215988102 | 215994568 | chr2:215988102-215994568:+:L1PA7:REF | L1PA7 | REF | full-length | MREG | — | — | — | — | — | — | 0.97 |
— | — | — | — | 0.99 |
chr2 | 216454715 | 216460842 | chr2:216454715-216460842:+:L1PA5:REF | L1PA5 | REF | full-length | SMARCAL1 | 0.99 |
0.99 |
0.97 |
0.96 |
0.94 |
0.98 |
0.98 |
1.0 |
0.97 |
0.98 |
0.99 |
0.98 |
chr2 | 216977758 | 216983154 | chr2:216977758-216983154:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.34 |
— |
chr2 | 218102605 | 218108683 | chr2:218102605-218108683:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.97 |
0.96 |
0.44 |
0.97 |
0.83 |
0.24 |
0.91 |
0.99 |
0.71 |
0.88 |
0.97 |
chr2 | 218771971 | 218773383 | chr2:218771971-218773383:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CYP27A1 | 0.02 |
0.97 |
0.95 |
0.91 |
0.9 |
0.94 |
0.98 |
0.97 |
0.95 |
0.93 |
0.94 |
0.98 |
chr2 | 219931818 | 219937838 | chr2:219931818-219937838:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.82 |
0.96 |
0.79 |
0.22 |
0.78 |
0.9 |
0.68 |
0.9 |
0.84 |
0.93 |
0.86 |
chr2 | 220382217 | 220388343 | chr2:220382217-220388343:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.8 |
0.72 |
0.45 |
0.84 |
0.87 |
0.04 |
0.83 |
0.91 |
0.56 |
0.86 |
0.87 |
chr2 | 220413500 | 220413502 | chr2:220413500-220413502:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.77 |
— | — | — | — | — | 0.83 |
0.77 |
— | — |
chr2 | 221984562 | 221990586 | chr2:221984562-221990586:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.94 |
0.56 |
0.25 |
0.8 |
0.72 |
0.91 |
0.97 |
0.94 |
0.93 |
0.81 |
chr2 | 222149601 | 222155632 | chr2:222149601-222155632:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.96 |
0.47 |
0.14 |
0.74 |
0.72 |
0.5 |
0.61 |
0.92 |
0.66 |
0.83 |
chr2 | 227064885 | 227070875 | chr2:227064885-227070875:+:L1PA3:REF | L1PA3 | REF | full-length | COL4A4 | 0.18 |
0.93 |
0.98 |
0.92 |
0.07 |
0.84 |
0.79 |
0.84 |
0.77 |
0.88 |
0.91 |
0.99 |
chr2 | 227544418 | 227546619 | chr2:227544418-227546619:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | AGFG1 | 0.84 |
0.47 |
0.84 |
0.99 |
0.87 |
0.84 |
— | 0.98 |
0.92 |
0.84 |
0.73 |
0.85 |
chr2 | 228030894 | 228037043 | chr2:228030894-228037043:+:L1PA4:REF | L1PA4 | REF | full-length | SPHKAP | 0.01 |
0.87 |
0.6 |
0.59 |
0.84 |
0.65 |
0.13 |
0.55 |
0.94 |
0.11 |
0.52 |
0.87 |
chr2 | 228199138 | 228205299 | chr2:228199138-228205299:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.57 |
0.63 |
0.33 |
0.91 |
0.7 |
0.49 |
— | 0.94 |
0.25 |
0.6 |
0.74 |
chr2 | 228419987 | 228426024 | chr2:228419987-228426024:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
— | 0.55 |
0.03 |
0.1 |
0.85 |
0.24 |
— | 0.83 |
0.25 |
0.66 |
0.61 |
chr2 | 228568257 | 228574281 | chr2:228568257-228574281:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01807 | 0.03 |
0.02 |
0.83 |
0.33 |
0.09 |
0.92 |
0.78 |
0.89 |
0.92 |
0.64 |
0.88 |
0.41 |
chr2 | 228755693 | 228761717 | chr2:228755693-228761717:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.86 |
0.76 |
0.63 |
0.95 |
0.77 |
0.89 |
0.96 |
0.59 |
0.9 |
0.9 |
chr2 | 229441293 | 229441295 | chr2:229441293-229441295:+:L1HS:NONREF | L1HS | KNR | — | DNER | — | — | — | — | — | — | 0.46 |
— | — | — | — | — |
chr2 | 229476842 | 229476844 | chr2:229476842-229476844:+:L1HS:NONREF | L1HS | KNR | — | DNER | — | 0.83 |
0.89 |
— | — | — | — | — | 0.86 |
0.71 |
— | 0.9 |
chr2 | 230337069 | 230342513 | chr2:230337069-230342513:-:L1HS:REF | L1HS | REF | 3prime-truncated | SP140L | 0.0 |
— | 0.96 |
0.99 |
0.08 |
0.98 |
0.97 |
0.98 |
0.95 |
0.5 |
0.98 |
0.01 |
chr2 | 230619262 | 230622123 | chr2:230619262-230622123:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.79 |
0.99 |
0.95 |
— | 0.94 |
0.98 |
0.72 |
0.99 |
0.98 |
0.94 |
0.99 |
1.0 |
chr2 | 232149196 | 232155229 | chr2:232149196-232155229:-:L1HS:REF | L1HS | REF | full-length | DIS3L2 | 0.93 |
0.97 |
0.96 |
0.94 |
0.18 |
0.96 |
0.98 |
0.94 |
0.81 |
0.97 |
0.98 |
0.99 |
chr2 | 232355238 | 232361245 | chr2:232355238-232361245:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.01 |
0.98 |
0.44 |
0.89 |
0.9 |
0.13 |
0.91 |
0.97 |
0.92 |
0.91 |
0.87 |