Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 155466628 | 155472644 | chr2:155466628-155472644:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.42 |
0.64 |
0.67 |
0.81 |
0.86 |
0.7 |
0.68 |
0.74 |
0.94 |
0.48 |
0.72 |
0.97 |
chr2 | 155671335 | 155671341 | chr2:155671335-155671341:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.91 |
— | 0.06 |
— | — | — | 0.93 |
0.85 |
— | 0.99 |
chr2 | 155763399 | 155767519 | chr2:155763399-155767519:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.24 |
— |
chr2 | 155879907 | 155885578 | chr2:155879907-155885578:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.33 |
0.08 |
0.27 |
0.8 |
0.24 |
0.05 |
0.19 |
0.81 |
0.45 |
0.19 |
0.64 |
chr2 | 155965887 | 155971915 | chr2:155965887-155971915:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.67 |
0.94 |
0.93 |
0.09 |
0.75 |
0.9 |
0.76 |
0.89 |
0.01 |
0.77 |
0.98 |
chr2 | 156254518 | 156260532 | chr2:156254518-156260532:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01876 | 0.09 |
0.99 |
0.27 |
0.94 |
0.06 |
0.68 |
0.52 |
0.76 |
0.37 |
0.02 |
0.82 |
0.02 |
chr2 | 156775796 | 156776575 | chr2:156775796-156776575:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.43 |
— | 0.98 |
0.81 |
0.96 |
0.82 |
0.52 |
0.92 |
0.98 |
0.95 |
0.93 |
0.97 |
chr2 | 156962342 | 156968483 | chr2:156962342-156968483:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.19 |
0.96 |
0.89 |
0.96 |
0.88 |
0.85 |
0.8 |
0.94 |
0.97 |
0.71 |
0.95 |
0.98 |
chr2 | 157368535 | 157374566 | chr2:157368535-157374566:+:L1PA2:REF | L1PA2 | REF | full-length | FAM133DP | 0.02 |
0.9 |
0.88 |
0.64 |
0.28 |
0.8 |
0.74 |
0.8 |
0.93 |
0.73 |
0.83 |
0.97 |
chr2 | 157397599 | 157403696 | chr2:157397599-157403696:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.43 |
0.81 |
0.03 |
0.85 |
0.59 |
0.24 |
0.56 |
0.96 |
0.29 |
0.54 |
0.96 |
chr2 | 157515143 | 157521173 | chr2:157515143-157521173:+:L1PA2:REF | L1PA2 | REF | full-length | ACVR1C | 0.05 |
0.88 |
0.95 |
0.73 |
0.08 |
0.84 |
0.91 |
0.87 |
0.85 |
0.64 |
0.85 |
0.98 |
chr2 | 157566353 | 157572377 | chr2:157566353-157572377:+:L1HS:REF | L1HS | REF | full-length | ACVR1C | 0.02 |
0.94 |
0.91 |
0.75 |
0.14 |
0.79 |
0.81 |
0.8 |
0.9 |
0.81 |
0.87 |
0.98 |
chr2 | 158351231 | 158357242 | chr2:158351231-158357242:+:L1PA2:REF | L1PA2 | REF | full-length | CCDC148 | 0.4 |
0.88 |
0.97 |
0.7 |
0.1 |
0.91 |
0.89 |
0.94 |
0.9 |
0.88 |
0.91 |
0.97 |
chr2 | 158522617 | 158528649 | chr2:158522617-158528649:+:L1PA2:REF | L1PA2 | REF | full-length | PKP4 | 0.95 |
0.94 |
0.98 |
0.98 |
0.6 |
0.95 |
0.93 |
0.94 |
0.97 |
0.97 |
0.94 |
0.99 |
chr2 | 159821745 | 159828118 | chr2:159821745-159828118:+:L1PA7:REF | L1PA7 | REF | full-length | LY75-CD302 | 0.03 |
— | — | — | 0.5 |
0.57 |
0.14 |
— | — | 0.81 |
0.6 |
0.82 |
chr2 | 160114516 | 160120680 | chr2:160114516-160120680:+:L1HS:REF | L1HS | REF | full-length | ITGB6 | 0.0 |
— | 0.86 |
— | 0.95 |
— | 0.37 |
— | — | 0.57 |
0.9 |
0.92 |
chr2 | 160756918 | 160763090 | chr2:160756918-160763090:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.96 |
0.92 |
0.13 |
0.93 |
0.94 |
0.69 |
0.88 |
0.98 |
0.8 |
0.95 |
0.96 |
chr2 | 160766499 | 160772615 | chr2:160766499-160772615:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.97 |
0.95 |
— | 0.89 |
0.85 |
0.74 |
— | 0.98 |
0.67 |
0.97 |
0.93 |
chr2 | 160797332 | 160803466 | chr2:160797332-160803466:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.98 |
0.97 |
0.97 |
0.95 |
0.88 |
0.86 |
0.96 |
0.95 |
0.91 |
0.98 |
0.93 |
chr2 | 160850732 | 160856748 | chr2:160850732-160856748:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.9 |
0.9 |
0.84 |
0.17 |
0.94 |
0.83 |
0.95 |
0.88 |
0.87 |
0.9 |
0.94 |
chr2 | 161002169 | 161003669 | chr2:161002169-161003669:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | — | 0.84 |
— | 0.76 |
0.86 |
0.87 |
— | — | 0.84 |
0.9 |
0.9 |
chr2 | 161457298 | 161462858 | chr2:161457298-161462858:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.61 |
— |
chr2 | 161892394 | 161892396 | chr2:161892394-161892396:-:L1HS:NONREF | L1HS | KNR | — | SLC4A10 | 0.03 |
— | — | — | — | — | — | — | — | — | — | — |
chr2 | 163432002 | 163432004 | chr2:163432002-163432004:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.75 |
— |
chr2 | 163497385 | 163500000 | chr2:163497385-163500000:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.02 |
0.99 |
0.97 |
0.82 |
0.92 |
0.61 |
0.52 |
0.62 |
0.93 |
0.93 |
0.88 |
0.98 |
chr2 | 164261247 | 164267132 | chr2:164261247-164267132:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.83 |
0.72 |
0.72 |
0.89 |
0.51 |
0.25 |
0.61 |
0.86 |
0.7 |
0.78 |
0.97 |
chr2 | 165485934 | 165491963 | chr2:165485934-165491963:+:L1PA2:REF | L1PA2 | REF | full-length | CSRNP3 | 0.02 |
0.77 |
0.97 |
— | 0.36 |
0.89 |
0.82 |
0.85 |
0.97 |
0.95 |
0.92 |
0.89 |
chr2 | 165731663 | 165737694 | chr2:165731663-165737694:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.95 |
0.96 |
0.67 |
0.28 |
0.92 |
0.87 |
0.98 |
0.96 |
0.95 |
0.97 |
0.95 |
chr2 | 165971495 | 165977930 | chr2:165971495-165977930:+:L1PA8:REF | L1PA8 | REF | full-length | LOC102724058 | 0.01 |
— | 0.71 |
— | — | 0.65 |
0.32 |
0.67 |
— | 0.68 |
0.44 |
0.81 |
chr2 | 166685835 | 166691939 | chr2:166685835-166691939:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.4 |
0.52 |
0.48 |
0.75 |
0.5 |
0.5 |
0.77 |
0.64 |
0.13 |
0.63 |
0.59 |
chr2 | 166702725 | 166708745 | chr2:166702725-166708745:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.67 |
0.75 |
0.38 |
0.94 |
— | 0.53 |
0.94 |
0.95 |
0.4 |
0.91 |
0.83 |
chr2 | 166853711 | 166859875 | chr2:166853711-166859875:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.41 |
0.66 |
0.36 |
0.9 |
0.59 |
0.41 |
0.9 |
0.95 |
0.33 |
0.89 |
0.56 |
chr2 | 166939709 | 166941592 | chr2:166939709-166941592:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | XIRP2 | 0.0 |
0.04 |
0.49 |
0.05 |
0.82 |
0.19 |
0.28 |
0.93 |
0.95 |
0.08 |
0.92 |
0.13 |
chr2 | 166988454 | 166994509 | chr2:166988454-166994509:+:L1HS:REF | L1HS | REF | full-length | XIRP2 | 0.02 |
0.85 |
0.81 |
— | 0.49 |
0.81 |
0.77 |
0.93 |
0.72 |
0.53 |
0.96 |
0.87 |
chr2 | 167081946 | 167087967 | chr2:167081946-167087967:-:L1PA2:REF | L1PA2 | REF | full-length | XIRP2 | 0.02 |
0.7 |
0.8 |
0.76 |
0.95 |
0.8 |
0.83 |
0.95 |
0.95 |
0.52 |
0.94 |
0.84 |
chr2 | 167662955 | 167668974 | chr2:167662955-167668974:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.78 |
0.93 |
0.77 |
0.94 |
0.87 |
0.86 |
0.93 |
0.97 |
0.53 |
0.94 |
0.94 |
chr2 | 167804326 | 167810426 | chr2:167804326-167810426:-:L1PA4:REF | L1PA4 | REF | full-length | LOC105616981 | 0.55 |
0.29 |
0.88 |
0.06 |
0.79 |
0.4 |
0.97 |
0.73 |
0.91 |
0.21 |
0.62 |
0.36 |
chr2 | 167835042 | 167841189 | chr2:167835042-167841189:+:L1PA3:REF | L1PA3 | REF | full-length | LOC105616981 | 0.91 |
0.93 |
0.96 |
0.44 |
0.93 |
0.78 |
0.98 |
0.88 |
0.98 |
0.48 |
0.91 |
0.92 |
chr2 | 169248623 | 169254656 | chr2:169248623-169254656:+:L1HS:REF | L1HS | REF | full-length | LRP2 | 0.36 |
0.87 |
0.97 |
0.82 |
0.12 |
0.76 |
0.82 |
0.78 |
0.85 |
0.93 |
0.84 |
0.98 |
chr2 | 169452781 | 169458934 | chr2:169452781-169458934:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.72 |
0.34 |
0.88 |
0.86 |
0.78 |
0.79 |
0.73 |
0.89 |
0.97 |
0.9 |
0.88 |
0.82 |
chr2 | 170125609 | 170132418 | chr2:170125609-170132418:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.36 |
— |
chr2 | 171641285 | 171647419 | chr2:171641285-171647419:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.1 |
0.89 |
0.86 |
0.76 |
0.87 |
0.8 |
0.58 |
0.84 |
0.95 |
0.84 |
0.79 |
0.95 |
chr2 | 172187264 | 172193414 | chr2:172187264-172193414:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.82 |
0.62 |
— | 0.88 |
0.79 |
0.66 |
0.83 |
— | 0.6 |
0.87 |
0.92 |
chr2 | 172315270 | 172321297 | chr2:172315270-172321297:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.96 |
0.96 |
0.86 |
0.22 |
0.96 |
0.92 |
0.98 |
0.95 |
0.89 |
0.92 |
0.97 |
chr2 | 173527289 | 173533317 | chr2:173527289-173533317:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.02 |
0.96 |
0.34 |
0.11 |
0.89 |
0.8 |
0.89 |
0.87 |
0.06 |
0.89 |
0.03 |
chr2 | 173699375 | 173705410 | chr2:173699375-173705410:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.98 |
0.97 |
0.91 |
0.17 |
0.91 |
0.86 |
0.93 |
0.95 |
0.98 |
0.94 |
0.98 |
chr2 | 174404458 | 174410482 | chr2:174404458-174410482:-:L1PA2:REF | L1PA2 | REF | full-length | SCRN3 | 0.87 |
0.98 |
0.02 |
0.49 |
0.1 |
0.9 |
0.99 |
0.88 |
0.42 |
0.01 |
0.67 |
0.98 |
chr2 | 175481951 | 175487994 | chr2:175481951-175487994:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.68 |
0.94 |
0.76 |
0.13 |
0.82 |
0.8 |
0.86 |
— | 0.88 |
0.85 |
0.97 |
chr2 | 175588546 | 175594563 | chr2:175588546-175594563:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.96 |
0.94 |
0.89 |
0.07 |
0.9 |
0.31 |
0.78 |
— | 0.0 |
0.79 |
0.98 |
chr2 | 175668021 | 175671166 | chr2:175668021-175671166:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.17 |
— |